data_4JIH # _model_server_result.job_id 9vufrGHyNR2f5808CYUOGQ _model_server_result.datetime_utc '2024-11-22 22:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4JIH # _exptl.entry_id 4JIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 319.399 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{5-[(2E)-2-methyl-3-phenylprop-2-en-1-ylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl}acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JIH _cell.length_a 88.963 _cell.length_b 88.963 _cell.length_c 77.822 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 300 A ALA 298 1_555 A N CSO 301 A CSO 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale2 A C CSO 301 A CSO 299 1_555 A N ASN 302 A ASN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C15 H13 N O3 S2' _chem_comp.formula_weight 319.399 _chem_comp.id EPR _chem_comp.mon_nstd_flag . _chem_comp.name '{5-[(2E)-2-methyl-3-phenylprop-2-en-1-ylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Epalrestat # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C13 EPR sing 97 n n C1 C9 EPR sing 98 n n O1 C14 EPR doub 99 n n S1 C10 EPR sing 100 n n S1 C12 EPR sing 101 n n C9 C10 EPR doub 102 e n C10 C11 EPR sing 103 n n C11 N EPR sing 104 n n C11 O EPR doub 105 n n C12 N EPR sing 106 n n C12 S EPR doub 107 n n C13 C14 EPR sing 108 n n C14 O2 EPR sing 109 n n C1 C8 EPR doub 110 e n C1 C91 EPR sing 111 n n C8 C16 EPR sing 112 n n C16 C17 EPR doub 113 n y C16 C15 EPR sing 114 n y C17 C18 EPR sing 115 n y C18 C19 EPR doub 116 n y C19 C20 EPR sing 117 n y C20 C15 EPR doub 118 n y O2 HO2 EPR sing 119 n n C9 H9 EPR sing 120 n n C13 H13 EPR sing 121 n n C13 H13A EPR sing 122 n n C8 H5 EPR sing 123 n n C91 H6 EPR sing 124 n n C91 H7 EPR sing 125 n n C91 H8 EPR sing 126 n n C17 H91 EPR sing 127 n n C18 H10 EPR sing 128 n n C19 H11 EPR sing 129 n n C20 H12 EPR sing 130 n n C15 H131 EPR sing 131 n n # _atom_sites.entry_id 4JIH _atom_sites.fract_transf_matrix[1][1] 0.011241 _atom_sites.fract_transf_matrix[1][2] 0.00649 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPR A 1 401 1 EPR EPR . C 3 NAP A 1 402 2 NAP NAP . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 37 HOH HOH . D 4 HOH A 38 538 38 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 40 HOH HOH . D 4 HOH A 41 541 41 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 45 HOH HOH . D 4 HOH A 46 546 46 HOH HOH . D 4 HOH A 47 547 47 HOH HOH . D 4 HOH A 48 548 48 HOH HOH . D 4 HOH A 49 549 49 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 52 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 55 HOH HOH . D 4 HOH A 56 556 56 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 58 HOH HOH . D 4 HOH A 59 559 59 HOH HOH . D 4 HOH A 60 560 60 HOH HOH . D 4 HOH A 61 561 61 HOH HOH . D 4 HOH A 62 562 62 HOH HOH . D 4 HOH A 63 563 63 HOH HOH . D 4 HOH A 64 564 64 HOH HOH . D 4 HOH A 65 565 65 HOH HOH . D 4 HOH A 66 566 66 HOH HOH . D 4 HOH A 67 567 67 HOH HOH . D 4 HOH A 68 568 68 HOH HOH . D 4 HOH A 69 569 69 HOH HOH . D 4 HOH A 70 570 70 HOH HOH . D 4 HOH A 71 571 71 HOH HOH . D 4 HOH A 72 572 72 HOH HOH . D 4 HOH A 73 573 73 HOH HOH . D 4 HOH A 74 574 74 HOH HOH . D 4 HOH A 75 575 75 HOH HOH . D 4 HOH A 76 576 76 HOH HOH . D 4 HOH A 77 577 77 HOH HOH . D 4 HOH A 78 578 78 HOH HOH . D 4 HOH A 79 579 79 HOH HOH . D 4 HOH A 80 580 80 HOH HOH . D 4 HOH A 81 581 81 HOH HOH . D 4 HOH A 82 582 82 HOH HOH . D 4 HOH A 83 583 83 HOH HOH . D 4 HOH A 84 584 84 HOH HOH . D 4 HOH A 85 585 85 HOH HOH . D 4 HOH A 86 586 86 HOH HOH . D 4 HOH A 87 587 87 HOH HOH . D 4 HOH A 88 588 88 HOH HOH . D 4 HOH A 89 589 89 HOH HOH . D 4 HOH A 90 590 90 HOH HOH . D 4 HOH A 91 591 91 HOH HOH . D 4 HOH A 92 592 92 HOH HOH . D 4 HOH A 93 593 93 HOH HOH . D 4 HOH A 94 594 94 HOH HOH . D 4 HOH A 95 595 95 HOH HOH . D 4 HOH A 96 596 96 HOH HOH . D 4 HOH A 97 597 97 HOH HOH . D 4 HOH A 98 598 98 HOH HOH . D 4 HOH A 99 599 99 HOH HOH . D 4 HOH A 100 600 100 HOH HOH . D 4 HOH A 101 601 102 HOH HOH . D 4 HOH A 102 602 103 HOH HOH . D 4 HOH A 103 603 104 HOH HOH . D 4 HOH A 104 604 105 HOH HOH . D 4 HOH A 105 605 106 HOH HOH . D 4 HOH A 106 606 107 HOH HOH . D 4 HOH A 107 607 108 HOH HOH . D 4 HOH A 108 608 109 HOH HOH . D 4 HOH A 109 609 110 HOH HOH . D 4 HOH A 110 610 111 HOH HOH . D 4 HOH A 111 611 112 HOH HOH . D 4 HOH A 112 612 113 HOH HOH . D 4 HOH A 113 613 114 HOH HOH . D 4 HOH A 114 614 115 HOH HOH . D 4 HOH A 115 615 116 HOH HOH . D 4 HOH A 116 616 117 HOH HOH . D 4 HOH A 117 617 118 HOH HOH . D 4 HOH A 118 618 119 HOH HOH . D 4 HOH A 119 619 120 HOH HOH . D 4 HOH A 120 620 121 HOH HOH . D 4 HOH A 121 621 122 HOH HOH . D 4 HOH A 122 622 123 HOH HOH . D 4 HOH A 123 623 124 HOH HOH . D 4 HOH A 124 624 125 HOH HOH . D 4 HOH A 125 625 126 HOH HOH . D 4 HOH A 126 626 127 HOH HOH . D 4 HOH A 127 627 128 HOH HOH . D 4 HOH A 128 628 129 HOH HOH . D 4 HOH A 129 629 130 HOH HOH . D 4 HOH A 130 630 131 HOH HOH . D 4 HOH A 131 631 132 HOH HOH . D 4 HOH A 132 632 133 HOH HOH . D 4 HOH A 133 633 134 HOH HOH . D 4 HOH A 134 634 135 HOH HOH . D 4 HOH A 135 635 136 HOH HOH . D 4 HOH A 136 636 137 HOH HOH . D 4 HOH A 137 637 138 HOH HOH . D 4 HOH A 138 638 139 HOH HOH . D 4 HOH A 139 639 140 HOH HOH . D 4 HOH A 140 640 141 HOH HOH . D 4 HOH A 141 641 142 HOH HOH . D 4 HOH A 142 642 143 HOH HOH . D 4 HOH A 143 643 144 HOH HOH . D 4 HOH A 144 644 145 HOH HOH . D 4 HOH A 145 645 146 HOH HOH . D 4 HOH A 146 646 147 HOH HOH . D 4 HOH A 147 647 148 HOH HOH . D 4 HOH A 148 648 149 HOH HOH . D 4 HOH A 149 649 150 HOH HOH . D 4 HOH A 150 650 151 HOH HOH . D 4 HOH A 151 651 152 HOH HOH . D 4 HOH A 152 652 153 HOH HOH . D 4 HOH A 153 653 154 HOH HOH . D 4 HOH A 154 654 155 HOH HOH . D 4 HOH A 155 655 156 HOH HOH . D 4 HOH A 156 656 157 HOH HOH . D 4 HOH A 157 657 158 HOH HOH . D 4 HOH A 158 658 159 HOH HOH . D 4 HOH A 159 659 160 HOH HOH . D 4 HOH A 160 660 161 HOH HOH . D 4 HOH A 161 661 162 HOH HOH . D 4 HOH A 162 662 163 HOH HOH . D 4 HOH A 163 663 164 HOH HOH . D 4 HOH A 164 664 165 HOH HOH . D 4 HOH A 165 665 166 HOH HOH . D 4 HOH A 166 666 167 HOH HOH . D 4 HOH A 167 667 168 HOH HOH . D 4 HOH A 168 668 169 HOH HOH . D 4 HOH A 169 669 170 HOH HOH . D 4 HOH A 170 670 171 HOH HOH . D 4 HOH A 171 671 172 HOH HOH . D 4 HOH A 172 672 173 HOH HOH . D 4 HOH A 173 673 174 HOH HOH . D 4 HOH A 174 674 175 HOH HOH . D 4 HOH A 175 675 176 HOH HOH . D 4 HOH A 176 676 177 HOH HOH . D 4 HOH A 177 677 178 HOH HOH . D 4 HOH A 178 678 179 HOH HOH . D 4 HOH A 179 679 180 HOH HOH . D 4 HOH A 180 680 181 HOH HOH . D 4 HOH A 181 681 182 HOH HOH . D 4 HOH A 182 682 183 HOH HOH . D 4 HOH A 183 683 184 HOH HOH . D 4 HOH A 184 684 185 HOH HOH . D 4 HOH A 185 685 186 HOH HOH . D 4 HOH A 186 686 187 HOH HOH . D 4 HOH A 187 687 188 HOH HOH . D 4 HOH A 188 688 189 HOH HOH . D 4 HOH A 189 689 190 HOH HOH . D 4 HOH A 190 690 191 HOH HOH . D 4 HOH A 191 691 192 HOH HOH . D 4 HOH A 192 692 193 HOH HOH . D 4 HOH A 193 693 194 HOH HOH . D 4 HOH A 194 694 195 HOH HOH . D 4 HOH A 195 695 196 HOH HOH . D 4 HOH A 196 696 197 HOH HOH . D 4 HOH A 197 697 198 HOH HOH . D 4 HOH A 198 698 199 HOH HOH . D 4 HOH A 199 699 200 HOH HOH . D 4 HOH A 200 700 201 HOH HOH . D 4 HOH A 201 701 202 HOH HOH . D 4 HOH A 202 702 203 HOH HOH . D 4 HOH A 203 703 204 HOH HOH . D 4 HOH A 204 704 205 HOH HOH . D 4 HOH A 205 705 206 HOH HOH . D 4 HOH A 206 706 207 HOH HOH . D 4 HOH A 207 707 208 HOH HOH . D 4 HOH A 208 708 209 HOH HOH . D 4 HOH A 209 709 210 HOH HOH . D 4 HOH A 210 710 211 HOH HOH . D 4 HOH A 211 711 212 HOH HOH . D 4 HOH A 212 712 213 HOH HOH . D 4 HOH A 213 713 214 HOH HOH . D 4 HOH A 214 714 215 HOH HOH . D 4 HOH A 215 715 216 HOH HOH . D 4 HOH A 216 716 217 HOH HOH . D 4 HOH A 217 717 218 HOH HOH . D 4 HOH A 218 718 219 HOH HOH . D 4 HOH A 219 719 220 HOH HOH . D 4 HOH A 220 720 221 HOH HOH . D 4 HOH A 221 721 222 HOH HOH . D 4 HOH A 222 722 223 HOH HOH . D 4 HOH A 223 723 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N EPR . . . B 2 -24.705 -23.957 -9.241 1 46.6 ? N EPR 401 A 1 HETATM 2 O O EPR . . . B 2 -25.791 -21.969 -9.265 1 52.91 ? O EPR 401 A 1 HETATM 3 S S EPR . . . B 2 -23.3 -26.277 -9.567 1 56.64 ? S EPR 401 A 1 HETATM 4 C C1 EPR . . . B 2 -25.968 -21.281 -13.172 1 41.79 ? C1 EPR 401 A 1 HETATM 5 O O1 EPR . . . B 2 -22.897 -23.54 -7.444 1 52.14 ? O1 EPR 401 A 1 HETATM 6 S S1 EPR . . . B 2 -23.689 -24.034 -11.681 1 68.14 ? S1 EPR 401 A 1 HETATM 7 O O2 EPR . . . B 2 -23.666 -24.891 -5.931 1 22.1 ? O2 EPR 401 A 1 HETATM 8 C C9 EPR . . . B 2 -24.784 -21.522 -12.27 1 52.47 ? C9 EPR 401 A 1 HETATM 9 C C10 EPR . . . B 2 -24.63 -22.635 -11.289 1 51.03 ? C10 EPR 401 A 1 HETATM 10 C C11 EPR . . . B 2 -25.079 -22.828 -9.879 1 37.42 ? C11 EPR 401 A 1 HETATM 11 C C12 EPR . . . B 2 -23.958 -24.705 -10.085 1 64.16 ? C12 EPR 401 A 1 HETATM 12 C C13 EPR . . . B 2 -25.051 -24.355 -7.872 1 31.28 ? C13 EPR 401 A 1 HETATM 13 C C14 EPR . . . B 2 -23.801 -24.27 -7.012 1 34.52 ? C14 EPR 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #