data_4JII
#
_model_server_result.job_id            OGMcfZH-QZSBlgrokbK9Pg 
_model_server_result.datetime_utc      '2024-11-13 00:01:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jii 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4JII 
#
_exptl.entry_id    4JII 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4JII 
_cell.length_a            90.002 
_cell.length_b            90.002 
_cell.length_c            78.552 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JII 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 214 X PRO 212 1_555 D NA NA . X NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc2 A O LEU 251 X LEU 249 1_555 D NA NA . X NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4JII 
_atom_sites.fract_transf_matrix[1][1]    0.011111 
_atom_sites.fract_transf_matrix[1][2]    0.006415 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01283 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01273 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP X 1 401 1 NAP NAP . 
C 3 ZST X 1 402 1 ZST ZST . 
D 4 NA X 1 403 1 NA NA . 
E 5 HOH X 1 501 1 HOH HOH . 
E 5 HOH X 2 502 2 HOH HOH . 
E 5 HOH X 3 503 3 HOH HOH . 
E 5 HOH X 4 504 4 HOH HOH . 
E 5 HOH X 5 505 5 HOH HOH . 
E 5 HOH X 6 506 6 HOH HOH . 
E 5 HOH X 7 507 7 HOH HOH . 
E 5 HOH X 8 508 8 HOH HOH . 
E 5 HOH X 9 509 9 HOH HOH . 
E 5 HOH X 10 510 10 HOH HOH . 
E 5 HOH X 11 511 11 HOH HOH . 
E 5 HOH X 12 512 12 HOH HOH . 
E 5 HOH X 13 513 13 HOH HOH . 
E 5 HOH X 14 514 14 HOH HOH . 
E 5 HOH X 15 515 15 HOH HOH . 
E 5 HOH X 16 516 16 HOH HOH . 
E 5 HOH X 17 517 17 HOH HOH . 
E 5 HOH X 18 518 18 HOH HOH . 
E 5 HOH X 19 519 19 HOH HOH . 
E 5 HOH X 20 520 20 HOH HOH . 
E 5 HOH X 21 521 21 HOH HOH . 
E 5 HOH X 22 522 22 HOH HOH . 
E 5 HOH X 23 523 23 HOH HOH . 
E 5 HOH X 24 524 24 HOH HOH . 
E 5 HOH X 25 525 25 HOH HOH . 
E 5 HOH X 26 526 26 HOH HOH . 
E 5 HOH X 27 527 27 HOH HOH . 
E 5 HOH X 28 528 28 HOH HOH . 
E 5 HOH X 29 529 29 HOH HOH . 
E 5 HOH X 30 530 30 HOH HOH . 
E 5 HOH X 31 531 31 HOH HOH . 
E 5 HOH X 32 532 32 HOH HOH . 
E 5 HOH X 33 533 33 HOH HOH . 
E 5 HOH X 34 534 34 HOH HOH . 
E 5 HOH X 35 535 35 HOH HOH . 
E 5 HOH X 36 536 36 HOH HOH . 
E 5 HOH X 37 537 37 HOH HOH . 
E 5 HOH X 38 538 38 HOH HOH . 
E 5 HOH X 39 539 39 HOH HOH . 
E 5 HOH X 40 540 40 HOH HOH . 
E 5 HOH X 41 541 41 HOH HOH . 
E 5 HOH X 42 542 42 HOH HOH . 
E 5 HOH X 43 543 43 HOH HOH . 
E 5 HOH X 44 544 44 HOH HOH . 
E 5 HOH X 45 545 45 HOH HOH . 
E 5 HOH X 46 546 46 HOH HOH . 
E 5 HOH X 47 547 47 HOH HOH . 
E 5 HOH X 48 548 48 HOH HOH . 
E 5 HOH X 49 549 49 HOH HOH . 
E 5 HOH X 50 550 50 HOH HOH . 
E 5 HOH X 51 551 51 HOH HOH . 
E 5 HOH X 52 552 52 HOH HOH . 
E 5 HOH X 53 553 53 HOH HOH . 
E 5 HOH X 54 554 54 HOH HOH . 
E 5 HOH X 55 555 55 HOH HOH . 
E 5 HOH X 56 556 56 HOH HOH . 
E 5 HOH X 57 557 57 HOH HOH . 
E 5 HOH X 58 558 58 HOH HOH . 
E 5 HOH X 59 559 59 HOH HOH . 
E 5 HOH X 60 560 60 HOH HOH . 
E 5 HOH X 61 561 61 HOH HOH . 
E 5 HOH X 62 562 62 HOH HOH . 
E 5 HOH X 63 563 63 HOH HOH . 
E 5 HOH X 64 564 64 HOH HOH . 
E 5 HOH X 65 565 65 HOH HOH . 
E 5 HOH X 66 566 66 HOH HOH . 
E 5 HOH X 67 567 67 HOH HOH . 
E 5 HOH X 68 568 68 HOH HOH . 
E 5 HOH X 69 569 69 HOH HOH . 
E 5 HOH X 70 570 70 HOH HOH . 
E 5 HOH X 71 571 71 HOH HOH . 
E 5 HOH X 72 572 72 HOH HOH . 
E 5 HOH X 73 573 73 HOH HOH . 
E 5 HOH X 74 574 74 HOH HOH . 
E 5 HOH X 75 575 75 HOH HOH . 
E 5 HOH X 76 576 76 HOH HOH . 
E 5 HOH X 77 577 77 HOH HOH . 
E 5 HOH X 78 578 78 HOH HOH . 
E 5 HOH X 79 579 79 HOH HOH . 
E 5 HOH X 80 580 80 HOH HOH . 
E 5 HOH X 81 581 81 HOH HOH . 
E 5 HOH X 82 582 82 HOH HOH . 
E 5 HOH X 83 583 83 HOH HOH . 
E 5 HOH X 84 584 84 HOH HOH . 
E 5 HOH X 85 585 86 HOH HOH . 
E 5 HOH X 86 586 87 HOH HOH . 
E 5 HOH X 87 587 88 HOH HOH . 
E 5 HOH X 88 588 89 HOH HOH . 
E 5 HOH X 89 589 90 HOH HOH . 
E 5 HOH X 90 590 91 HOH HOH . 
E 5 HOH X 91 591 92 HOH HOH . 
E 5 HOH X 92 592 93 HOH HOH . 
E 5 HOH X 93 593 94 HOH HOH . 
E 5 HOH X 94 594 95 HOH HOH . 
E 5 HOH X 95 595 96 HOH HOH . 
E 5 HOH X 96 596 97 HOH HOH . 
E 5 HOH X 97 597 98 HOH HOH . 
E 5 HOH X 98 598 99 HOH HOH . 
E 5 HOH X 99 599 100 HOH HOH . 
E 5 HOH X 100 600 101 HOH HOH . 
E 5 HOH X 101 601 102 HOH HOH . 
E 5 HOH X 102 602 103 HOH HOH . 
E 5 HOH X 103 603 104 HOH HOH . 
E 5 HOH X 104 604 105 HOH HOH . 
E 5 HOH X 105 605 106 HOH HOH . 
E 5 HOH X 106 606 107 HOH HOH . 
E 5 HOH X 107 607 108 HOH HOH . 
E 5 HOH X 108 608 109 HOH HOH . 
E 5 HOH X 109 609 110 HOH HOH . 
E 5 HOH X 110 610 111 HOH HOH . 
E 5 HOH X 111 611 112 HOH HOH . 
E 5 HOH X 112 612 113 HOH HOH . 
E 5 HOH X 113 613 114 HOH HOH . 
E 5 HOH X 114 614 115 HOH HOH . 
E 5 HOH X 115 615 116 HOH HOH . 
E 5 HOH X 116 616 117 HOH HOH . 
E 5 HOH X 117 617 118 HOH HOH . 
E 5 HOH X 118 618 119 HOH HOH . 
E 5 HOH X 119 619 120 HOH HOH . 
E 5 HOH X 120 620 121 HOH HOH . 
E 5 HOH X 121 621 122 HOH HOH . 
E 5 HOH X 122 622 123 HOH HOH . 
E 5 HOH X 123 623 124 HOH HOH . 
E 5 HOH X 124 624 125 HOH HOH . 
E 5 HOH X 125 625 126 HOH HOH . 
E 5 HOH X 126 626 127 HOH HOH . 
E 5 HOH X 127 627 128 HOH HOH . 
E 5 HOH X 128 628 129 HOH HOH . 
E 5 HOH X 129 629 130 HOH HOH . 
E 5 HOH X 130 630 131 HOH HOH . 
E 5 HOH X 131 631 132 HOH HOH . 
E 5 HOH X 132 632 133 HOH HOH . 
E 5 HOH X 133 633 134 HOH HOH . 
E 5 HOH X 134 634 135 HOH HOH . 
E 5 HOH X 135 635 136 HOH HOH . 
E 5 HOH X 136 636 137 HOH HOH . 
E 5 HOH X 137 637 138 HOH HOH . 
E 5 HOH X 138 638 139 HOH HOH . 
E 5 HOH X 139 639 140 HOH HOH . 
E 5 HOH X 140 640 141 HOH HOH . 
E 5 HOH X 141 641 142 HOH HOH . 
E 5 HOH X 142 642 143 HOH HOH . 
E 5 HOH X 143 643 144 HOH HOH . 
E 5 HOH X 144 644 145 HOH HOH . 
E 5 HOH X 145 645 146 HOH HOH . 
E 5 HOH X 146 646 147 HOH HOH . 
E 5 HOH X 147 647 148 HOH HOH . 
E 5 HOH X 148 648 149 HOH HOH . 
E 5 HOH X 149 649 150 HOH HOH . 
E 5 HOH X 150 650 151 HOH HOH . 
E 5 HOH X 151 651 152 HOH HOH . 
E 5 HOH X 152 652 153 HOH HOH . 
E 5 HOH X 153 653 154 HOH HOH . 
E 5 HOH X 154 654 155 HOH HOH . 
E 5 HOH X 155 655 156 HOH HOH . 
E 5 HOH X 156 656 157 HOH HOH . 
E 5 HOH X 157 657 158 HOH HOH . 
E 5 HOH X 158 658 159 HOH HOH . 
E 5 HOH X 159 659 160 HOH HOH . 
E 5 HOH X 160 660 161 HOH HOH . 
E 5 HOH X 161 661 162 HOH HOH . 
E 5 HOH X 162 662 163 HOH HOH . 
E 5 HOH X 163 663 164 HOH HOH . 
E 5 HOH X 164 664 165 HOH HOH . 
E 5 HOH X 165 665 166 HOH HOH . 
E 5 HOH X 166 666 167 HOH HOH . 
E 5 HOH X 167 667 168 HOH HOH . 
E 5 HOH X 168 668 169 HOH HOH . 
E 5 HOH X 169 669 170 HOH HOH . 
E 5 HOH X 170 670 171 HOH HOH . 
E 5 HOH X 171 671 172 HOH HOH . 
E 5 HOH X 172 672 173 HOH HOH . 
E 5 HOH X 173 673 174 HOH HOH . 
E 5 HOH X 174 674 175 HOH HOH . 
E 5 HOH X 175 675 176 HOH HOH . 
E 5 HOH X 176 676 177 HOH HOH . 
E 5 HOH X 177 677 178 HOH HOH . 
E 5 HOH X 178 678 179 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               12.41 
_atom_site.Cartn_y               47.194 
_atom_site.Cartn_z               -2.09 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.97 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          X 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#