data_4JII # _model_server_result.job_id waBEn14dOhhaVmiwxl66ig _model_server_result.datetime_utc '2024-11-24 17:30:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4JII # _exptl.entry_id 4JII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JII _cell.length_a 90.002 _cell.length_b 90.002 _cell.length_c 78.552 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JII _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 214 X PRO 212 1_555 D NA NA . X NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc2 A O LEU 251 X LEU 249 1_555 D NA NA . X NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4JII _atom_sites.fract_transf_matrix[1][1] 0.011111 _atom_sites.fract_transf_matrix[1][2] 0.006415 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 401 1 NAP NAP . C 3 ZST X 1 402 1 ZST ZST . D 4 NA X 1 403 1 NA NA . E 5 HOH X 1 501 1 HOH HOH . E 5 HOH X 2 502 2 HOH HOH . E 5 HOH X 3 503 3 HOH HOH . E 5 HOH X 4 504 4 HOH HOH . E 5 HOH X 5 505 5 HOH HOH . E 5 HOH X 6 506 6 HOH HOH . E 5 HOH X 7 507 7 HOH HOH . E 5 HOH X 8 508 8 HOH HOH . E 5 HOH X 9 509 9 HOH HOH . E 5 HOH X 10 510 10 HOH HOH . E 5 HOH X 11 511 11 HOH HOH . E 5 HOH X 12 512 12 HOH HOH . E 5 HOH X 13 513 13 HOH HOH . E 5 HOH X 14 514 14 HOH HOH . E 5 HOH X 15 515 15 HOH HOH . E 5 HOH X 16 516 16 HOH HOH . E 5 HOH X 17 517 17 HOH HOH . E 5 HOH X 18 518 18 HOH HOH . E 5 HOH X 19 519 19 HOH HOH . E 5 HOH X 20 520 20 HOH HOH . E 5 HOH X 21 521 21 HOH HOH . E 5 HOH X 22 522 22 HOH HOH . E 5 HOH X 23 523 23 HOH HOH . E 5 HOH X 24 524 24 HOH HOH . E 5 HOH X 25 525 25 HOH HOH . E 5 HOH X 26 526 26 HOH HOH . E 5 HOH X 27 527 27 HOH HOH . E 5 HOH X 28 528 28 HOH HOH . E 5 HOH X 29 529 29 HOH HOH . E 5 HOH X 30 530 30 HOH HOH . E 5 HOH X 31 531 31 HOH HOH . E 5 HOH X 32 532 32 HOH HOH . E 5 HOH X 33 533 33 HOH HOH . E 5 HOH X 34 534 34 HOH HOH . E 5 HOH X 35 535 35 HOH HOH . E 5 HOH X 36 536 36 HOH HOH . E 5 HOH X 37 537 37 HOH HOH . E 5 HOH X 38 538 38 HOH HOH . E 5 HOH X 39 539 39 HOH HOH . E 5 HOH X 40 540 40 HOH HOH . E 5 HOH X 41 541 41 HOH HOH . E 5 HOH X 42 542 42 HOH HOH . E 5 HOH X 43 543 43 HOH HOH . E 5 HOH X 44 544 44 HOH HOH . E 5 HOH X 45 545 45 HOH HOH . E 5 HOH X 46 546 46 HOH HOH . E 5 HOH X 47 547 47 HOH HOH . E 5 HOH X 48 548 48 HOH HOH . E 5 HOH X 49 549 49 HOH HOH . E 5 HOH X 50 550 50 HOH HOH . E 5 HOH X 51 551 51 HOH HOH . E 5 HOH X 52 552 52 HOH HOH . E 5 HOH X 53 553 53 HOH HOH . E 5 HOH X 54 554 54 HOH HOH . E 5 HOH X 55 555 55 HOH HOH . E 5 HOH X 56 556 56 HOH HOH . E 5 HOH X 57 557 57 HOH HOH . E 5 HOH X 58 558 58 HOH HOH . E 5 HOH X 59 559 59 HOH HOH . E 5 HOH X 60 560 60 HOH HOH . E 5 HOH X 61 561 61 HOH HOH . E 5 HOH X 62 562 62 HOH HOH . E 5 HOH X 63 563 63 HOH HOH . E 5 HOH X 64 564 64 HOH HOH . E 5 HOH X 65 565 65 HOH HOH . E 5 HOH X 66 566 66 HOH HOH . E 5 HOH X 67 567 67 HOH HOH . E 5 HOH X 68 568 68 HOH HOH . E 5 HOH X 69 569 69 HOH HOH . E 5 HOH X 70 570 70 HOH HOH . E 5 HOH X 71 571 71 HOH HOH . E 5 HOH X 72 572 72 HOH HOH . E 5 HOH X 73 573 73 HOH HOH . E 5 HOH X 74 574 74 HOH HOH . E 5 HOH X 75 575 75 HOH HOH . E 5 HOH X 76 576 76 HOH HOH . E 5 HOH X 77 577 77 HOH HOH . E 5 HOH X 78 578 78 HOH HOH . E 5 HOH X 79 579 79 HOH HOH . E 5 HOH X 80 580 80 HOH HOH . E 5 HOH X 81 581 81 HOH HOH . E 5 HOH X 82 582 82 HOH HOH . E 5 HOH X 83 583 83 HOH HOH . E 5 HOH X 84 584 84 HOH HOH . E 5 HOH X 85 585 86 HOH HOH . E 5 HOH X 86 586 87 HOH HOH . E 5 HOH X 87 587 88 HOH HOH . E 5 HOH X 88 588 89 HOH HOH . E 5 HOH X 89 589 90 HOH HOH . E 5 HOH X 90 590 91 HOH HOH . E 5 HOH X 91 591 92 HOH HOH . E 5 HOH X 92 592 93 HOH HOH . E 5 HOH X 93 593 94 HOH HOH . E 5 HOH X 94 594 95 HOH HOH . E 5 HOH X 95 595 96 HOH HOH . E 5 HOH X 96 596 97 HOH HOH . E 5 HOH X 97 597 98 HOH HOH . E 5 HOH X 98 598 99 HOH HOH . E 5 HOH X 99 599 100 HOH HOH . E 5 HOH X 100 600 101 HOH HOH . E 5 HOH X 101 601 102 HOH HOH . E 5 HOH X 102 602 103 HOH HOH . E 5 HOH X 103 603 104 HOH HOH . E 5 HOH X 104 604 105 HOH HOH . E 5 HOH X 105 605 106 HOH HOH . E 5 HOH X 106 606 107 HOH HOH . E 5 HOH X 107 607 108 HOH HOH . E 5 HOH X 108 608 109 HOH HOH . E 5 HOH X 109 609 110 HOH HOH . E 5 HOH X 110 610 111 HOH HOH . E 5 HOH X 111 611 112 HOH HOH . E 5 HOH X 112 612 113 HOH HOH . E 5 HOH X 113 613 114 HOH HOH . E 5 HOH X 114 614 115 HOH HOH . E 5 HOH X 115 615 116 HOH HOH . E 5 HOH X 116 616 117 HOH HOH . E 5 HOH X 117 617 118 HOH HOH . E 5 HOH X 118 618 119 HOH HOH . E 5 HOH X 119 619 120 HOH HOH . E 5 HOH X 120 620 121 HOH HOH . E 5 HOH X 121 621 122 HOH HOH . E 5 HOH X 122 622 123 HOH HOH . E 5 HOH X 123 623 124 HOH HOH . E 5 HOH X 124 624 125 HOH HOH . E 5 HOH X 125 625 126 HOH HOH . E 5 HOH X 126 626 127 HOH HOH . E 5 HOH X 127 627 128 HOH HOH . E 5 HOH X 128 628 129 HOH HOH . E 5 HOH X 129 629 130 HOH HOH . E 5 HOH X 130 630 131 HOH HOH . E 5 HOH X 131 631 132 HOH HOH . E 5 HOH X 132 632 133 HOH HOH . E 5 HOH X 133 633 134 HOH HOH . E 5 HOH X 134 634 135 HOH HOH . E 5 HOH X 135 635 136 HOH HOH . E 5 HOH X 136 636 137 HOH HOH . E 5 HOH X 137 637 138 HOH HOH . E 5 HOH X 138 638 139 HOH HOH . E 5 HOH X 139 639 140 HOH HOH . E 5 HOH X 140 640 141 HOH HOH . E 5 HOH X 141 641 142 HOH HOH . E 5 HOH X 142 642 143 HOH HOH . E 5 HOH X 143 643 144 HOH HOH . E 5 HOH X 144 644 145 HOH HOH . E 5 HOH X 145 645 146 HOH HOH . E 5 HOH X 146 646 147 HOH HOH . E 5 HOH X 147 647 148 HOH HOH . E 5 HOH X 148 648 149 HOH HOH . E 5 HOH X 149 649 150 HOH HOH . E 5 HOH X 150 650 151 HOH HOH . E 5 HOH X 151 651 152 HOH HOH . E 5 HOH X 152 652 153 HOH HOH . E 5 HOH X 153 653 154 HOH HOH . E 5 HOH X 154 654 155 HOH HOH . E 5 HOH X 155 655 156 HOH HOH . E 5 HOH X 156 656 157 HOH HOH . E 5 HOH X 157 657 158 HOH HOH . E 5 HOH X 158 658 159 HOH HOH . E 5 HOH X 159 659 160 HOH HOH . E 5 HOH X 160 660 161 HOH HOH . E 5 HOH X 161 661 162 HOH HOH . E 5 HOH X 162 662 163 HOH HOH . E 5 HOH X 163 663 164 HOH HOH . E 5 HOH X 164 664 165 HOH HOH . E 5 HOH X 165 665 166 HOH HOH . E 5 HOH X 166 666 167 HOH HOH . E 5 HOH X 167 667 168 HOH HOH . E 5 HOH X 168 668 169 HOH HOH . E 5 HOH X 169 669 170 HOH HOH . E 5 HOH X 170 670 171 HOH HOH . E 5 HOH X 171 671 172 HOH HOH . E 5 HOH X 172 672 173 HOH HOH . E 5 HOH X 173 673 174 HOH HOH . E 5 HOH X 174 674 175 HOH HOH . E 5 HOH X 175 675 176 HOH HOH . E 5 HOH X 176 676 177 HOH HOH . E 5 HOH X 177 677 178 HOH HOH . E 5 HOH X 178 678 179 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.41 _atom_site.Cartn_y 47.194 _atom_site.Cartn_z -2.09 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 405 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #