data_4JIP # _model_server_result.job_id c-l_3-aAYep82ctv5uEabw _model_server_result.datetime_utc '2025-07-12 11:21:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4JIP # _exptl.entry_id 4JIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JIP _cell.length_a 58.91 _cell.length_b 68.28 _cell.length_c 90.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 4JIP _atom_sites.fract_transf_matrix[1][1] 0.016975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 HBA A 1 402 1 HBA PHB . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 15 HOH HOH . D 4 HOH A 16 516 16 HOH HOH . D 4 HOH A 17 517 17 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 20 HOH HOH . D 4 HOH A 21 521 21 HOH HOH . D 4 HOH A 22 522 22 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 24 HOH HOH . D 4 HOH A 25 525 25 HOH HOH . D 4 HOH A 26 526 26 HOH HOH . D 4 HOH A 27 527 27 HOH HOH . D 4 HOH A 28 528 28 HOH HOH . D 4 HOH A 29 529 29 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 31 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 33 HOH HOH . D 4 HOH A 34 534 34 HOH HOH . D 4 HOH A 35 535 35 HOH HOH . D 4 HOH A 36 536 36 HOH HOH . D 4 HOH A 37 537 37 HOH HOH . D 4 HOH A 38 538 38 HOH HOH . D 4 HOH A 39 539 39 HOH HOH . D 4 HOH A 40 540 40 HOH HOH . D 4 HOH A 41 541 41 HOH HOH . D 4 HOH A 42 542 42 HOH HOH . D 4 HOH A 43 543 43 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 45 HOH HOH . D 4 HOH A 46 546 46 HOH HOH . D 4 HOH A 47 547 47 HOH HOH . D 4 HOH A 48 548 48 HOH HOH . D 4 HOH A 49 549 49 HOH HOH . D 4 HOH A 50 550 50 HOH HOH . D 4 HOH A 51 551 51 HOH HOH . D 4 HOH A 52 552 52 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 55 HOH HOH . D 4 HOH A 56 556 56 HOH HOH . D 4 HOH A 57 557 57 HOH HOH . D 4 HOH A 58 558 58 HOH HOH . D 4 HOH A 59 559 59 HOH HOH . D 4 HOH A 60 560 60 HOH HOH . D 4 HOH A 61 561 61 HOH HOH . D 4 HOH A 62 562 62 HOH HOH . D 4 HOH A 63 563 63 HOH HOH . D 4 HOH A 64 564 64 HOH HOH . D 4 HOH A 65 565 65 HOH HOH . D 4 HOH A 66 566 66 HOH HOH . D 4 HOH A 67 567 67 HOH HOH . D 4 HOH A 68 568 68 HOH HOH . D 4 HOH A 69 569 69 HOH HOH . D 4 HOH A 70 570 70 HOH HOH . D 4 HOH A 71 571 71 HOH HOH . D 4 HOH A 72 572 72 HOH HOH . D 4 HOH A 73 573 73 HOH HOH . D 4 HOH A 74 574 74 HOH HOH . D 4 HOH A 75 575 75 HOH HOH . D 4 HOH A 76 576 76 HOH HOH . D 4 HOH A 77 577 77 HOH HOH . D 4 HOH A 78 578 78 HOH HOH . D 4 HOH A 79 579 79 HOH HOH . D 4 HOH A 80 580 80 HOH HOH . D 4 HOH A 81 581 81 HOH HOH . D 4 HOH A 82 582 82 HOH HOH . D 4 HOH A 83 583 83 HOH HOH . D 4 HOH A 84 584 84 HOH HOH . D 4 HOH A 85 585 85 HOH HOH . D 4 HOH A 86 586 86 HOH HOH . D 4 HOH A 87 587 87 HOH HOH . D 4 HOH A 88 588 88 HOH HOH . D 4 HOH A 89 589 89 HOH HOH . D 4 HOH A 90 590 90 HOH HOH . D 4 HOH A 91 591 91 HOH HOH . D 4 HOH A 92 592 92 HOH HOH . D 4 HOH A 93 593 93 HOH HOH . D 4 HOH A 94 594 94 HOH HOH . D 4 HOH A 95 595 95 HOH HOH . D 4 HOH A 96 596 96 HOH HOH . D 4 HOH A 97 597 97 HOH HOH . D 4 HOH A 98 598 98 HOH HOH . D 4 HOH A 99 599 99 HOH HOH . D 4 HOH A 100 600 100 HOH HOH . D 4 HOH A 101 601 101 HOH HOH . D 4 HOH A 102 602 102 HOH HOH . D 4 HOH A 103 603 103 HOH HOH . D 4 HOH A 104 604 104 HOH HOH . D 4 HOH A 105 605 105 HOH HOH . D 4 HOH A 106 606 106 HOH HOH . D 4 HOH A 107 607 107 HOH HOH . D 4 HOH A 108 608 108 HOH HOH . D 4 HOH A 109 609 109 HOH HOH . D 4 HOH A 110 610 110 HOH HOH . D 4 HOH A 111 611 111 HOH HOH . D 4 HOH A 112 612 112 HOH HOH . D 4 HOH A 113 613 113 HOH HOH . D 4 HOH A 114 614 114 HOH HOH . D 4 HOH A 115 615 115 HOH HOH . D 4 HOH A 116 616 116 HOH HOH . D 4 HOH A 117 617 117 HOH HOH . D 4 HOH A 118 618 118 HOH HOH . D 4 HOH A 119 619 119 HOH HOH . D 4 HOH A 120 620 120 HOH HOH . D 4 HOH A 121 621 121 HOH HOH . D 4 HOH A 122 622 122 HOH HOH . D 4 HOH A 123 623 123 HOH HOH . D 4 HOH A 124 624 124 HOH HOH . D 4 HOH A 125 625 125 HOH HOH . D 4 HOH A 126 626 126 HOH HOH . D 4 HOH A 127 627 127 HOH HOH . D 4 HOH A 128 628 128 HOH HOH . D 4 HOH A 129 629 129 HOH HOH . D 4 HOH A 130 630 130 HOH HOH . D 4 HOH A 131 631 131 HOH HOH . D 4 HOH A 132 632 132 HOH HOH . D 4 HOH A 133 633 133 HOH HOH . D 4 HOH A 134 634 134 HOH HOH . D 4 HOH A 135 635 135 HOH HOH . D 4 HOH A 136 636 136 HOH HOH . D 4 HOH A 137 637 137 HOH HOH . D 4 HOH A 138 638 138 HOH HOH . D 4 HOH A 139 639 139 HOH HOH . D 4 HOH A 140 640 140 HOH HOH . D 4 HOH A 141 641 141 HOH HOH . D 4 HOH A 142 642 142 HOH HOH . D 4 HOH A 143 643 143 HOH HOH . D 4 HOH A 144 644 144 HOH HOH . D 4 HOH A 145 645 145 HOH HOH . D 4 HOH A 146 646 146 HOH HOH . D 4 HOH A 147 647 147 HOH HOH . D 4 HOH A 148 648 148 HOH HOH . D 4 HOH A 149 649 149 HOH HOH . D 4 HOH A 150 650 150 HOH HOH . D 4 HOH A 151 651 151 HOH HOH . D 4 HOH A 152 652 152 HOH HOH . D 4 HOH A 153 653 153 HOH HOH . D 4 HOH A 154 654 154 HOH HOH . D 4 HOH A 155 655 155 HOH HOH . D 4 HOH A 156 656 156 HOH HOH . D 4 HOH A 157 657 157 HOH HOH . D 4 HOH A 158 658 158 HOH HOH . D 4 HOH A 159 659 159 HOH HOH . D 4 HOH A 160 660 160 HOH HOH . D 4 HOH A 161 661 161 HOH HOH . D 4 HOH A 162 662 162 HOH HOH . D 4 HOH A 163 663 163 HOH HOH . D 4 HOH A 164 664 164 HOH HOH . D 4 HOH A 165 665 165 HOH HOH . D 4 HOH A 166 666 166 HOH HOH . D 4 HOH A 167 667 167 HOH HOH . D 4 HOH A 168 668 168 HOH HOH . D 4 HOH A 169 669 169 HOH HOH . D 4 HOH A 170 670 170 HOH HOH . D 4 HOH A 171 671 171 HOH HOH . D 4 HOH A 172 672 172 HOH HOH . D 4 HOH A 173 673 173 HOH HOH . D 4 HOH A 174 674 174 HOH HOH . D 4 HOH A 175 675 175 HOH HOH . D 4 HOH A 176 676 176 HOH HOH . D 4 HOH A 177 677 177 HOH HOH . D 4 HOH A 178 678 178 HOH HOH . D 4 HOH A 179 679 179 HOH HOH . D 4 HOH A 180 680 180 HOH HOH . D 4 HOH A 181 681 181 HOH HOH . D 4 HOH A 182 682 182 HOH HOH . D 4 HOH A 183 683 183 HOH HOH . D 4 HOH A 184 684 184 HOH HOH . D 4 HOH A 185 685 185 HOH HOH . D 4 HOH A 186 686 186 HOH HOH . D 4 HOH A 187 687 187 HOH HOH . D 4 HOH A 188 688 188 HOH HOH . D 4 HOH A 189 689 189 HOH HOH . D 4 HOH A 190 690 190 HOH HOH . D 4 HOH A 191 691 191 HOH HOH . D 4 HOH A 192 692 192 HOH HOH . D 4 HOH A 193 693 193 HOH HOH . D 4 HOH A 194 694 194 HOH HOH . D 4 HOH A 195 695 195 HOH HOH . D 4 HOH A 196 696 196 HOH HOH . D 4 HOH A 197 697 197 HOH HOH . D 4 HOH A 198 698 198 HOH HOH . D 4 HOH A 199 699 199 HOH HOH . D 4 HOH A 200 700 200 HOH HOH . D 4 HOH A 201 701 201 HOH HOH . D 4 HOH A 202 702 203 HOH HOH . D 4 HOH A 203 703 204 HOH HOH . D 4 HOH A 204 704 205 HOH HOH . D 4 HOH A 205 705 206 HOH HOH . D 4 HOH A 206 706 207 HOH HOH . D 4 HOH A 207 707 208 HOH HOH . D 4 HOH A 208 708 209 HOH HOH . D 4 HOH A 209 709 210 HOH HOH . D 4 HOH A 210 710 211 HOH HOH . D 4 HOH A 211 711 212 HOH HOH . D 4 HOH A 212 712 213 HOH HOH . D 4 HOH A 213 713 214 HOH HOH . D 4 HOH A 214 714 215 HOH HOH . D 4 HOH A 215 715 216 HOH HOH . D 4 HOH A 216 716 217 HOH HOH . D 4 HOH A 217 717 218 HOH HOH . D 4 HOH A 218 718 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -2.749 -0.183 5.175 1 14.38 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 -3.822 -0.679 5.899 1 13.58 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 -4.617 -1.473 5.387 1 12.91 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 -3.979 -0.33 7.221 1 12.92 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 -3.114 0.571 7.804 1 13.62 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 -3.274 0.889 8.982 1 13.33 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 -2.024 1.053 7.086 1 13.93 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 -1.105 1.887 7.681 1 14.8 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 -0.093 2.479 6.941 1 15.34 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 0.714 3.463 7.511 1 14.15 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 1.7 4.081 6.757 1 14.9 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 2.583 5.113 7.396 1 16.58 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 1.88 3.73 5.424 1 14.81 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 2.959 4.381 4.606 1 15.22 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 1.069 2.756 4.852 1 14.29 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 0.066 2.135 5.601 1 14.95 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 -0.79 1.199 5.033 1 14.53 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 -1.855 0.695 5.759 1 14.32 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 -0.698 0.869 3.568 1 14.7 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 -1.347 1.945 2.69 1 14.72 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 -2.738 1.976 2.907 1 13.87 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 -1.071 1.696 1.211 1 15.48 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 -1.419 0.363 0.914 1 15.8 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 0.398 1.935 0.865 1 15.58 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 0.797 3.156 1.45 1 16.1 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 0.634 2 -0.646 1 14.9 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 -0.112 3.084 -1.143 1 15.84 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 0.592 4.422 -1.716 1 15.83 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 -0.517 5.291 -2.244 1 13.86 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 1.333 5.123 -0.602 1 16.95 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 1.554 4.061 -2.819 1 15.5 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #