data_4JIR # _model_server_result.job_id htMIOYgbukmxaBIYwIBNLA _model_server_result.datetime_utc '2024-11-27 11:20:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4JIR # _exptl.entry_id 4JIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 319.399 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{5-[(2E)-2-methyl-3-phenylprop-2-en-1-ylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl}acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.16 _cell.angle_gamma 90 _cell.entry_id 4JIR _cell.length_a 47.106 _cell.length_b 68.674 _cell.length_c 49.323 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H13 N O3 S2' _chem_comp.formula_weight 319.399 _chem_comp.id EPR _chem_comp.mon_nstd_flag . _chem_comp.name '{5-[(2E)-2-methyl-3-phenylprop-2-en-1-ylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Epalrestat # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C13 EPR sing 83 n n C1 C9 EPR sing 84 n n O1 C14 EPR doub 85 n n S1 C10 EPR sing 86 n n S1 C12 EPR sing 87 n n C9 C10 EPR doub 88 e n C10 C11 EPR sing 89 n n C11 N EPR sing 90 n n C11 O EPR doub 91 n n C12 N EPR sing 92 n n C12 S EPR doub 93 n n C13 C14 EPR sing 94 n n C14 O2 EPR sing 95 n n C1 C8 EPR doub 96 e n C1 C91 EPR sing 97 n n C8 C16 EPR sing 98 n n C16 C17 EPR doub 99 n y C16 C15 EPR sing 100 n y C17 C18 EPR sing 101 n y C18 C19 EPR doub 102 n y C19 C20 EPR sing 103 n y C20 C15 EPR doub 104 n y O2 HO2 EPR sing 105 n n C9 H9 EPR sing 106 n n C13 H13 EPR sing 107 n n C13 H13A EPR sing 108 n n C8 H5 EPR sing 109 n n C91 H6 EPR sing 110 n n C91 H7 EPR sing 111 n n C91 H8 EPR sing 112 n n C17 H91 EPR sing 113 n n C18 H10 EPR sing 114 n n C19 H11 EPR sing 115 n n C20 H12 EPR sing 116 n n C15 H131 EPR sing 117 n n # _atom_sites.entry_id 4JIR _atom_sites.fract_transf_matrix[1][1] 0.021229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001544 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPR A 1 401 1 EPR EPR . C 3 SO4 A 1 402 2 SO4 SO4 . D 3 SO4 A 1 403 3 SO4 SO4 . E 4 NAP A 1 404 318 NAP NAP . F 5 HOH A 1 501 1 HOH HOH . F 5 HOH A 2 502 2 HOH HOH . F 5 HOH A 3 503 3 HOH HOH . F 5 HOH A 4 504 4 HOH HOH . F 5 HOH A 5 505 5 HOH HOH . F 5 HOH A 6 506 6 HOH HOH . F 5 HOH A 7 507 7 HOH HOH . F 5 HOH A 8 508 8 HOH HOH . F 5 HOH A 9 509 9 HOH HOH . F 5 HOH A 10 510 10 HOH HOH . F 5 HOH A 11 511 11 HOH HOH . F 5 HOH A 12 512 12 HOH HOH . F 5 HOH A 13 513 13 HOH HOH . F 5 HOH A 14 514 14 HOH HOH . F 5 HOH A 15 515 15 HOH HOH . F 5 HOH A 16 516 16 HOH HOH . F 5 HOH A 17 517 17 HOH HOH . F 5 HOH A 18 518 18 HOH HOH . F 5 HOH A 19 519 19 HOH HOH . F 5 HOH A 20 520 20 HOH HOH . F 5 HOH A 21 521 21 HOH HOH . F 5 HOH A 22 522 22 HOH HOH . F 5 HOH A 23 523 23 HOH HOH . F 5 HOH A 24 524 24 HOH HOH . F 5 HOH A 25 525 25 HOH HOH . F 5 HOH A 26 526 26 HOH HOH . F 5 HOH A 27 527 27 HOH HOH . F 5 HOH A 28 528 28 HOH HOH . F 5 HOH A 29 529 29 HOH HOH . F 5 HOH A 30 530 30 HOH HOH . F 5 HOH A 31 531 31 HOH HOH . F 5 HOH A 32 532 32 HOH HOH . F 5 HOH A 33 533 33 HOH HOH . F 5 HOH A 34 534 34 HOH HOH . F 5 HOH A 35 535 35 HOH HOH . F 5 HOH A 36 536 36 HOH HOH . F 5 HOH A 37 537 37 HOH HOH . F 5 HOH A 38 538 38 HOH HOH . F 5 HOH A 39 539 39 HOH HOH . F 5 HOH A 40 540 40 HOH HOH . F 5 HOH A 41 541 41 HOH HOH . F 5 HOH A 42 542 42 HOH HOH . F 5 HOH A 43 543 43 HOH HOH . F 5 HOH A 44 544 44 HOH HOH . F 5 HOH A 45 545 45 HOH HOH . F 5 HOH A 46 546 46 HOH HOH . F 5 HOH A 47 547 47 HOH HOH . F 5 HOH A 48 548 48 HOH HOH . F 5 HOH A 49 549 49 HOH HOH . F 5 HOH A 50 550 50 HOH HOH . F 5 HOH A 51 551 51 HOH HOH . F 5 HOH A 52 552 52 HOH HOH . F 5 HOH A 53 553 53 HOH HOH . F 5 HOH A 54 554 54 HOH HOH . F 5 HOH A 55 555 55 HOH HOH . F 5 HOH A 56 556 56 HOH HOH . F 5 HOH A 57 557 57 HOH HOH . F 5 HOH A 58 558 58 HOH HOH . F 5 HOH A 59 559 59 HOH HOH . F 5 HOH A 60 560 60 HOH HOH . F 5 HOH A 61 561 61 HOH HOH . F 5 HOH A 62 562 62 HOH HOH . F 5 HOH A 63 563 63 HOH HOH . F 5 HOH A 64 564 64 HOH HOH . F 5 HOH A 65 565 65 HOH HOH . F 5 HOH A 66 566 66 HOH HOH . F 5 HOH A 67 567 67 HOH HOH . F 5 HOH A 68 568 68 HOH HOH . F 5 HOH A 69 569 69 HOH HOH . F 5 HOH A 70 570 70 HOH HOH . F 5 HOH A 71 571 71 HOH HOH . F 5 HOH A 72 572 72 HOH HOH . F 5 HOH A 73 573 73 HOH HOH . F 5 HOH A 74 574 74 HOH HOH . F 5 HOH A 75 575 75 HOH HOH . F 5 HOH A 76 576 76 HOH HOH . F 5 HOH A 77 577 77 HOH HOH . F 5 HOH A 78 578 78 HOH HOH . F 5 HOH A 79 579 79 HOH HOH . F 5 HOH A 80 580 80 HOH HOH . F 5 HOH A 81 581 81 HOH HOH . F 5 HOH A 82 582 82 HOH HOH . F 5 HOH A 83 583 83 HOH HOH . F 5 HOH A 84 584 84 HOH HOH . F 5 HOH A 85 585 85 HOH HOH . F 5 HOH A 86 586 86 HOH HOH . F 5 HOH A 87 587 87 HOH HOH . F 5 HOH A 88 588 88 HOH HOH . F 5 HOH A 89 589 89 HOH HOH . F 5 HOH A 90 590 90 HOH HOH . F 5 HOH A 91 591 91 HOH HOH . F 5 HOH A 92 592 92 HOH HOH . F 5 HOH A 93 593 93 HOH HOH . F 5 HOH A 94 594 94 HOH HOH . F 5 HOH A 95 595 95 HOH HOH . F 5 HOH A 96 596 96 HOH HOH . F 5 HOH A 97 597 97 HOH HOH . F 5 HOH A 98 598 98 HOH HOH . F 5 HOH A 99 599 99 HOH HOH . F 5 HOH A 100 600 100 HOH HOH . F 5 HOH A 101 601 101 HOH HOH . F 5 HOH A 102 602 102 HOH HOH . F 5 HOH A 103 603 103 HOH HOH . F 5 HOH A 104 604 104 HOH HOH . F 5 HOH A 105 605 105 HOH HOH . F 5 HOH A 106 606 106 HOH HOH . F 5 HOH A 107 607 107 HOH HOH . F 5 HOH A 108 608 108 HOH HOH . F 5 HOH A 109 609 109 HOH HOH . F 5 HOH A 110 610 110 HOH HOH . F 5 HOH A 111 611 111 HOH HOH . F 5 HOH A 112 612 112 HOH HOH . F 5 HOH A 113 613 113 HOH HOH . F 5 HOH A 114 614 114 HOH HOH . F 5 HOH A 115 615 115 HOH HOH . F 5 HOH A 116 616 116 HOH HOH . F 5 HOH A 117 617 117 HOH HOH . F 5 HOH A 118 618 118 HOH HOH . F 5 HOH A 119 619 119 HOH HOH . F 5 HOH A 120 620 120 HOH HOH . F 5 HOH A 121 621 121 HOH HOH . F 5 HOH A 122 622 122 HOH HOH . F 5 HOH A 123 623 123 HOH HOH . F 5 HOH A 124 624 124 HOH HOH . F 5 HOH A 125 625 125 HOH HOH . F 5 HOH A 126 626 126 HOH HOH . F 5 HOH A 127 627 127 HOH HOH . F 5 HOH A 128 628 128 HOH HOH . F 5 HOH A 129 629 129 HOH HOH . F 5 HOH A 130 630 130 HOH HOH . F 5 HOH A 131 631 131 HOH HOH . F 5 HOH A 132 632 132 HOH HOH . F 5 HOH A 133 633 133 HOH HOH . F 5 HOH A 134 634 134 HOH HOH . F 5 HOH A 135 635 135 HOH HOH . F 5 HOH A 136 636 136 HOH HOH . F 5 HOH A 137 637 137 HOH HOH . F 5 HOH A 138 638 138 HOH HOH . F 5 HOH A 139 639 139 HOH HOH . F 5 HOH A 140 640 140 HOH HOH . F 5 HOH A 141 641 141 HOH HOH . F 5 HOH A 142 642 142 HOH HOH . F 5 HOH A 143 643 143 HOH HOH . F 5 HOH A 144 644 144 HOH HOH . F 5 HOH A 145 645 145 HOH HOH . F 5 HOH A 146 646 146 HOH HOH . F 5 HOH A 147 647 147 HOH HOH . F 5 HOH A 148 648 148 HOH HOH . F 5 HOH A 149 649 149 HOH HOH . F 5 HOH A 150 650 150 HOH HOH . F 5 HOH A 151 651 151 HOH HOH . F 5 HOH A 152 652 152 HOH HOH . F 5 HOH A 153 653 153 HOH HOH . F 5 HOH A 154 654 154 HOH HOH . F 5 HOH A 155 655 155 HOH HOH . F 5 HOH A 156 656 156 HOH HOH . F 5 HOH A 157 657 157 HOH HOH . F 5 HOH A 158 658 158 HOH HOH . F 5 HOH A 159 659 159 HOH HOH . F 5 HOH A 160 660 160 HOH HOH . F 5 HOH A 161 661 161 HOH HOH . F 5 HOH A 162 662 162 HOH HOH . F 5 HOH A 163 663 163 HOH HOH . F 5 HOH A 164 664 164 HOH HOH . F 5 HOH A 165 665 165 HOH HOH . F 5 HOH A 166 666 166 HOH HOH . F 5 HOH A 167 667 167 HOH HOH . F 5 HOH A 168 668 168 HOH HOH . F 5 HOH A 169 669 169 HOH HOH . F 5 HOH A 170 670 170 HOH HOH . F 5 HOH A 171 671 171 HOH HOH . F 5 HOH A 172 672 172 HOH HOH . F 5 HOH A 173 673 173 HOH HOH . F 5 HOH A 174 674 174 HOH HOH . F 5 HOH A 175 675 175 HOH HOH . F 5 HOH A 176 676 176 HOH HOH . F 5 HOH A 177 677 177 HOH HOH . F 5 HOH A 178 678 178 HOH HOH . F 5 HOH A 179 679 179 HOH HOH . F 5 HOH A 180 680 180 HOH HOH . F 5 HOH A 181 681 181 HOH HOH . F 5 HOH A 182 682 182 HOH HOH . F 5 HOH A 183 683 183 HOH HOH . F 5 HOH A 184 684 184 HOH HOH . F 5 HOH A 185 685 185 HOH HOH . F 5 HOH A 186 686 186 HOH HOH . F 5 HOH A 187 687 187 HOH HOH . F 5 HOH A 188 688 188 HOH HOH . F 5 HOH A 189 689 189 HOH HOH . F 5 HOH A 190 690 190 HOH HOH . F 5 HOH A 191 691 191 HOH HOH . F 5 HOH A 192 692 192 HOH HOH . F 5 HOH A 193 693 193 HOH HOH . F 5 HOH A 194 694 194 HOH HOH . F 5 HOH A 195 695 195 HOH HOH . F 5 HOH A 196 696 196 HOH HOH . F 5 HOH A 197 697 197 HOH HOH . F 5 HOH A 198 698 198 HOH HOH . F 5 HOH A 199 699 199 HOH HOH . F 5 HOH A 200 700 200 HOH HOH . F 5 HOH A 201 701 201 HOH HOH . F 5 HOH A 202 702 202 HOH HOH . F 5 HOH A 203 703 203 HOH HOH . F 5 HOH A 204 704 204 HOH HOH . F 5 HOH A 205 705 205 HOH HOH . F 5 HOH A 206 706 206 HOH HOH . F 5 HOH A 207 707 207 HOH HOH . F 5 HOH A 208 708 208 HOH HOH . F 5 HOH A 209 709 209 HOH HOH . F 5 HOH A 210 710 210 HOH HOH . F 5 HOH A 211 711 211 HOH HOH . F 5 HOH A 212 712 212 HOH HOH . F 5 HOH A 213 713 213 HOH HOH . F 5 HOH A 214 714 214 HOH HOH . F 5 HOH A 215 715 215 HOH HOH . F 5 HOH A 216 716 216 HOH HOH . F 5 HOH A 217 717 217 HOH HOH . F 5 HOH A 218 718 218 HOH HOH . F 5 HOH A 219 719 219 HOH HOH . F 5 HOH A 220 720 220 HOH HOH . F 5 HOH A 221 721 221 HOH HOH . F 5 HOH A 222 722 222 HOH HOH . F 5 HOH A 223 723 223 HOH HOH . F 5 HOH A 224 724 224 HOH HOH . F 5 HOH A 225 725 225 HOH HOH . F 5 HOH A 226 726 226 HOH HOH . F 5 HOH A 227 727 227 HOH HOH . F 5 HOH A 228 728 228 HOH HOH . F 5 HOH A 229 729 229 HOH HOH . F 5 HOH A 230 730 230 HOH HOH . F 5 HOH A 231 731 232 HOH HOH . F 5 HOH A 232 732 233 HOH HOH . F 5 HOH A 233 733 234 HOH HOH . F 5 HOH A 234 734 235 HOH HOH . F 5 HOH A 235 735 236 HOH HOH . F 5 HOH A 236 736 237 HOH HOH . F 5 HOH A 237 737 238 HOH HOH . F 5 HOH A 238 738 239 HOH HOH . F 5 HOH A 239 739 240 HOH HOH . F 5 HOH A 240 740 241 HOH HOH . F 5 HOH A 241 741 242 HOH HOH . F 5 HOH A 242 742 243 HOH HOH . F 5 HOH A 243 743 244 HOH HOH . F 5 HOH A 244 744 245 HOH HOH . F 5 HOH A 245 745 246 HOH HOH . F 5 HOH A 246 746 247 HOH HOH . F 5 HOH A 247 747 248 HOH HOH . F 5 HOH A 248 748 249 HOH HOH . F 5 HOH A 249 749 250 HOH HOH . F 5 HOH A 250 750 251 HOH HOH . F 5 HOH A 251 751 252 HOH HOH . F 5 HOH A 252 752 253 HOH HOH . F 5 HOH A 253 753 254 HOH HOH . F 5 HOH A 254 754 255 HOH HOH . F 5 HOH A 255 755 256 HOH HOH . F 5 HOH A 256 756 257 HOH HOH . F 5 HOH A 257 757 258 HOH HOH . F 5 HOH A 258 758 259 HOH HOH . F 5 HOH A 259 759 260 HOH HOH . F 5 HOH A 260 760 261 HOH HOH . F 5 HOH A 261 761 262 HOH HOH . F 5 HOH A 262 762 263 HOH HOH . F 5 HOH A 263 763 264 HOH HOH . F 5 HOH A 264 764 265 HOH HOH . F 5 HOH A 265 765 266 HOH HOH . F 5 HOH A 266 766 267 HOH HOH . F 5 HOH A 267 767 268 HOH HOH . F 5 HOH A 268 768 269 HOH HOH . F 5 HOH A 269 769 270 HOH HOH . F 5 HOH A 270 770 271 HOH HOH . F 5 HOH A 271 771 272 HOH HOH . F 5 HOH A 272 772 273 HOH HOH . F 5 HOH A 273 773 274 HOH HOH . F 5 HOH A 274 774 275 HOH HOH . F 5 HOH A 275 775 276 HOH HOH . F 5 HOH A 276 776 277 HOH HOH . F 5 HOH A 277 777 278 HOH HOH . F 5 HOH A 278 778 280 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N EPR . . . B 2 -5.204 7.713 17.746 1 22.63 ? N EPR 401 A 1 HETATM 2 O O EPR . . . B 2 -4.587 9.159 16.069 1 22.19 ? O EPR 401 A 1 HETATM 3 S S EPR . . . B 2 -6.327 6.306 19.801 1 37.72 ? S EPR 401 A 1 HETATM 4 C C1 EPR . . . B 2 -8.169 11.725 17.455 1 31.79 ? C1 EPR 401 A 1 HETATM 5 O O1 EPR . . . B 2 -3.297 5.316 15.975 1 11.65 ? O1 EPR 401 A 1 HETATM 6 S S1 EPR . . . B 2 -7.441 8.845 18.607 1 46.39 ? S1 EPR 401 A 1 HETATM 7 O O2 EPR . . . B 2 -5.491 5.682 16.068 1 20.62 ? O2 EPR 401 A 1 HETATM 8 C C9 EPR . . . B 2 -7.156 10.882 16.701 1 36.37 ? C9 EPR 401 A 1 HETATM 9 C C10 EPR . . . B 2 -6.621 9.636 17.306 1 28.39 ? C10 EPR 401 A 1 HETATM 10 C C11 EPR . . . B 2 -5.405 8.825 16.999 1 25.11 ? C11 EPR 401 A 1 HETATM 11 C C12 EPR . . . B 2 -6.213 7.627 18.643 1 30.03 ? C12 EPR 401 A 1 HETATM 12 C C13 EPR . . . B 2 -4.088 6.764 17.655 1 12.51 ? C13 EPR 401 A 1 HETATM 13 C C14 EPR . . . B 2 -4.309 5.855 16.48 1 17.64 ? C14 EPR 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #