data_4JIT
#
_model_server_result.job_id            45xoH12nhAOy2szbEyM5nw 
_model_server_result.datetime_utc      '2024-12-22 01:05:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jit 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    4JIT 
#
_exptl.entry_id    4JIT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              342.248 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{2-[(3S)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)pyrrolidin-1-yl]-2-oxoethyl}phosphonic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JIT 
_cell.length_a            94.066 
_cell.length_b            94.066 
_cell.length_c            162.633 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JIT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C11 H15 N6 O5 P' 
_chem_comp.formula_weight    342.248 
_chem_comp.id                3ZF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{2-[(3S)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)pyrrolidin-1-yl]-2-oxoethyl}phosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C6 3ZF sing 1 n n 
N1 C2 3ZF sing 2 n n 
N2 C2 3ZF sing 3 n n 
C2 N3 3ZF doub 4 n n 
N2 HN2 3ZF sing 5 n n 
N2 HN2A 3ZF sing 6 n n 
N3 C4 3ZF sing 7 n n 
N1 HN1 3ZF sing 8 n n 
C5 C4 3ZF doub 9 n y 
C4 N9 3ZF sing 10 n y 
C6 C5 3ZF sing 11 n n 
C5 N7 3ZF sing 12 n y 
O6 C6 3ZF doub 13 n n 
N7 C8 3ZF doub 14 n y 
C8 N9 3ZF sing 15 n y 
C8 H8 3ZF sing 16 n n 
N9 CAT 3ZF sing 17 n n 
CAO OAB 3ZF doub 18 n n 
OAD PAW 3ZF sing 19 n n 
OAD HOAD 3ZF sing 20 n n 
PAW OAE 3ZF sing 21 n n 
OAE HOAE 3ZF sing 22 n n 
OAF PAW 3ZF doub 23 n n 
CAT CAH 3ZF sing 24 n n 
CAH CAI 3ZF sing 25 n n 
CAH HAH 3ZF sing 26 n n 
CAH HAHA 3ZF sing 27 n n 
CAI NAU 3ZF sing 28 n n 
CAI HAI 3ZF sing 29 n n 
CAI HAIA 3ZF sing 30 n n 
CAO CAJ 3ZF sing 31 n n 
CAJ PAW 3ZF sing 32 n n 
CAJ HAJ 3ZF sing 33 n n 
CAJ HAJA 3ZF sing 34 n n 
CAT CAK 3ZF sing 35 n n 
CAK NAU 3ZF sing 36 n n 
CAK HAK 3ZF sing 37 n n 
CAK HAKA 3ZF sing 38 n n 
NAU CAO 3ZF sing 39 n n 
CAT HAT 3ZF sing 40 n n 
#
_atom_sites.entry_id                     4JIT 
_atom_sites.fract_transf_matrix[1][1]    0.010631 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 3ZF B 1 201 1 3ZF DRG . 
F 2 3ZF C 1 201 1 3ZF DRG . 
G 3 HOH B 1 301 2 HOH HOH . 
H 3 HOH C 1 301 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 3ZF . . . F 2 -21.874 41.131 8.154 1 93.89 ? N1 3ZF 201 C 1 
HETATM 2 C C2 3ZF . . . F 2 -22.48 40.534 9.192 1 93.32 ? C2 3ZF 201 C 1 
HETATM 3 N N2 3ZF . . . F 2 -23.297 39.37 8.955 1 90.42 ? N2 3ZF 201 C 1 
HETATM 4 N N3 3ZF . . . F 2 -22.345 40.999 10.467 1 96.46 ? N3 3ZF 201 C 1 
HETATM 5 C C4 3ZF . . . F 2 -21.57 42.112 10.709 1 98.14 ? C4 3ZF 201 C 1 
HETATM 6 C C5 3ZF . . . F 2 -20.93 42.748 9.659 1 97.75 ? C5 3ZF 201 C 1 
HETATM 7 C C6 3ZF . . . F 2 -21.091 42.231 8.327 1 96.32 ? C6 3ZF 201 C 1 
HETATM 8 O O6 3ZF . . . F 2 -20.475 42.83 7.257 1 97.38 ? O6 3ZF 201 C 1 
HETATM 9 N N7 3ZF . . . F 2 -20.226 43.826 10.197 1 99.51 ? N7 3ZF 201 C 1 
HETATM 10 C C8 3ZF . . . F 2 -20.429 43.844 11.546 1 100.95 ? C8 3ZF 201 C 1 
HETATM 11 N N9 3ZF . . . F 2 -21.24 42.82 11.873 1 100.22 ? N9 3ZF 201 C 1 
HETATM 12 O OAB 3ZF . . . F 2 -17.785 41.897 15.674 1 109.22 ? OAB 3ZF 201 C 1 
HETATM 13 O OAD 3ZF . . . F 2 -16.783 46.292 15.958 1 115.18 ? OAD 3ZF 201 C 1 
HETATM 14 O OAE 3ZF . . . F 2 -16.205 44.34 17.393 1 109.98 ? OAE 3ZF 201 C 1 
HETATM 15 O OAF 3ZF . . . F 2 -15.888 44.253 14.852 1 70.22 ? OAF 3ZF 201 C 1 
HETATM 16 C CAH 3ZF . . . F 2 -21.47 41.065 13.507 1 100.67 ? CAH 3ZF 201 C 1 
HETATM 17 C CAI 3ZF . . . F 2 -20.128 40.99 14.134 1 102.07 ? CAI 3ZF 201 C 1 
HETATM 18 C CAJ 3ZF . . . F 2 -18.492 44.198 15.818 1 107.88 ? CAJ 3ZF 201 C 1 
HETATM 19 C CAK 3ZF . . . F 2 -20.927 43.244 14.227 1 104.59 ? CAK 3ZF 201 C 1 
HETATM 20 C CAO 3ZF . . . F 2 -18.649 42.728 15.387 1 107.28 ? CAO 3ZF 201 C 1 
HETATM 21 C CAT 3ZF . . . F 2 -21.71 42.478 13.226 1 101.9 ? CAT 3ZF 201 C 1 
HETATM 22 N NAU 3ZF . . . F 2 -19.83 42.334 14.624 1 104.69 ? NAU 3ZF 201 C 1 
HETATM 23 P PAW 3ZF . . . F 2 -16.783 44.801 16.017 1 111.19 ? PAW 3ZF 201 C 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#