data_4JIX # _model_server_result.job_id kOqt5a5pg2F3xh_BMLf8Jg _model_server_result.datetime_utc '2024-11-04 23:48:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":208}' # _entry.id 4JIX # _exptl.entry_id 4JIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JIX _cell.length_a 76.59 _cell.length_b 76.59 _cell.length_c 124.31 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 N N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 71 A HIS 69 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 A NE2 HIS 75 A HIS 73 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc3 A NE2 HIS 83 A HIS 81 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc4 C ZN ZN . A ZN 201 1_555 D O3 TRS . A TRS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc5 C ZN ZN . A ZN 201 1_555 D N TRS . A TRS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc6 C ZN ZN . A ZN 201 1_555 U O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc7 T O HOH . A HOH 301 1_555 M ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc8 B NE2 HIS 71 B HIS 69 1_555 M ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc9 B NE2 HIS 75 B HIS 73 1_555 M ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc10 B NE2 HIS 83 B HIS 81 1_555 M ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc11 M ZN ZN . B ZN 201 1_555 N O2 GOL . B GOL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc12 M ZN ZN . B ZN 201 1_555 N O3 GOL . B GOL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4JIX _atom_sites.fract_transf_matrix[1][1] 0.013057 _atom_sites.fract_transf_matrix[1][2] 0.007538 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 999 ZN ZN . D 3 TRS A 1 202 998 TRS TRS . E 4 SO4 A 1 203 503 SO4 SO4 . F 4 SO4 A 1 204 504 SO4 SO4 . G 5 CL A 1 205 506 CL CL . H 6 GOL A 1 206 508 GOL GOL . I 6 GOL A 1 207 509 GOL GOL . J 6 GOL A 1 208 511 GOL GOL . K 6 GOL A 1 209 512 GOL GOL . L 6 GOL A 1 210 513 GOL GOL . M 2 ZN B 1 201 999 ZN ZN . N 6 GOL B 1 202 998 GOL GOL . O 4 SO4 B 1 203 501 SO4 SO4 . P 4 SO4 B 1 204 502 SO4 SO4 . Q 5 CL B 1 205 505 CL CL . R 5 CL B 1 206 507 CL CL . S 6 GOL B 1 207 510 GOL GOL . T 7 HOH A 1 301 997 HOH HOH . T 7 HOH A 2 302 515 HOH HOH . T 7 HOH A 3 303 516 HOH HOH . T 7 HOH A 4 304 517 HOH HOH . T 7 HOH A 5 305 518 HOH HOH . T 7 HOH A 6 306 519 HOH HOH . T 7 HOH A 7 307 520 HOH HOH . T 7 HOH A 8 308 521 HOH HOH . T 7 HOH A 9 309 522 HOH HOH . T 7 HOH A 10 310 523 HOH HOH . T 7 HOH A 11 311 524 HOH HOH . T 7 HOH A 12 312 525 HOH HOH . T 7 HOH A 13 313 526 HOH HOH . T 7 HOH A 14 314 527 HOH HOH . T 7 HOH A 15 315 528 HOH HOH . T 7 HOH A 16 316 529 HOH HOH . T 7 HOH A 17 317 531 HOH HOH . T 7 HOH A 18 318 532 HOH HOH . T 7 HOH A 19 319 536 HOH HOH . T 7 HOH A 20 320 540 HOH HOH . T 7 HOH A 21 321 541 HOH HOH . T 7 HOH A 22 322 542 HOH HOH . T 7 HOH A 23 323 543 HOH HOH . T 7 HOH A 24 324 556 HOH HOH . T 7 HOH A 25 325 557 HOH HOH . T 7 HOH A 26 326 566 HOH HOH . T 7 HOH A 27 327 567 HOH HOH . T 7 HOH A 28 328 568 HOH HOH . T 7 HOH A 29 329 569 HOH HOH . T 7 HOH A 30 330 570 HOH HOH . T 7 HOH A 31 331 571 HOH HOH . T 7 HOH A 32 332 572 HOH HOH . T 7 HOH A 33 333 573 HOH HOH . T 7 HOH A 34 334 574 HOH HOH . T 7 HOH A 35 335 575 HOH HOH . T 7 HOH A 36 336 577 HOH HOH . T 7 HOH A 37 337 578 HOH HOH . T 7 HOH A 38 338 580 HOH HOH . T 7 HOH A 39 339 581 HOH HOH . T 7 HOH A 40 340 582 HOH HOH . T 7 HOH A 41 341 583 HOH HOH . T 7 HOH A 42 342 584 HOH HOH . T 7 HOH A 43 343 585 HOH HOH . T 7 HOH A 44 344 586 HOH HOH . T 7 HOH A 45 345 589 HOH HOH . T 7 HOH A 46 346 590 HOH HOH . T 7 HOH A 47 347 591 HOH HOH . T 7 HOH A 48 348 592 HOH HOH . T 7 HOH A 49 349 593 HOH HOH . T 7 HOH A 50 350 613 HOH HOH . T 7 HOH A 51 351 614 HOH HOH . T 7 HOH A 52 352 615 HOH HOH . T 7 HOH A 53 353 617 HOH HOH . T 7 HOH A 54 354 618 HOH HOH . T 7 HOH A 55 355 619 HOH HOH . T 7 HOH A 56 356 620 HOH HOH . T 7 HOH A 57 357 621 HOH HOH . T 7 HOH A 58 358 622 HOH HOH . T 7 HOH A 59 359 623 HOH HOH . T 7 HOH A 60 360 625 HOH HOH . T 7 HOH A 61 361 627 HOH HOH . T 7 HOH A 62 362 628 HOH HOH . T 7 HOH A 63 363 629 HOH HOH . T 7 HOH A 64 364 630 HOH HOH . T 7 HOH A 65 365 631 HOH HOH . T 7 HOH A 66 366 642 HOH HOH . T 7 HOH A 67 367 643 HOH HOH . T 7 HOH A 68 368 644 HOH HOH . T 7 HOH A 69 369 645 HOH HOH . T 7 HOH A 70 370 646 HOH HOH . T 7 HOH A 71 371 647 HOH HOH . T 7 HOH A 72 372 648 HOH HOH . T 7 HOH A 73 373 649 HOH HOH . T 7 HOH A 74 374 650 HOH HOH . T 7 HOH A 75 375 651 HOH HOH . T 7 HOH A 76 376 652 HOH HOH . T 7 HOH A 77 377 653 HOH HOH . T 7 HOH A 78 378 670 HOH HOH . T 7 HOH A 79 379 672 HOH HOH . T 7 HOH A 80 380 673 HOH HOH . T 7 HOH A 81 381 674 HOH HOH . T 7 HOH A 82 382 675 HOH HOH . T 7 HOH A 83 383 676 HOH HOH . T 7 HOH A 84 384 679 HOH HOH . T 7 HOH A 85 385 680 HOH HOH . T 7 HOH A 86 386 681 HOH HOH . T 7 HOH A 87 387 684 HOH HOH . T 7 HOH A 88 388 688 HOH HOH . T 7 HOH A 89 389 691 HOH HOH . T 7 HOH A 90 390 692 HOH HOH . T 7 HOH A 91 391 695 HOH HOH . T 7 HOH A 92 392 696 HOH HOH . T 7 HOH A 93 393 699 HOH HOH . T 7 HOH A 94 394 700 HOH HOH . T 7 HOH A 95 395 701 HOH HOH . T 7 HOH A 96 396 702 HOH HOH . T 7 HOH A 97 397 703 HOH HOH . U 7 HOH B 1 301 997 HOH HOH . U 7 HOH B 2 302 514 HOH HOH . U 7 HOH B 3 303 530 HOH HOH . U 7 HOH B 4 304 533 HOH HOH . U 7 HOH B 5 305 534 HOH HOH . U 7 HOH B 6 306 535 HOH HOH . U 7 HOH B 7 307 537 HOH HOH . U 7 HOH B 8 308 538 HOH HOH . U 7 HOH B 9 309 539 HOH HOH . U 7 HOH B 10 310 544 HOH HOH . U 7 HOH B 11 311 545 HOH HOH . U 7 HOH B 12 312 546 HOH HOH . U 7 HOH B 13 313 547 HOH HOH . U 7 HOH B 14 314 548 HOH HOH . U 7 HOH B 15 315 549 HOH HOH . U 7 HOH B 16 316 550 HOH HOH . U 7 HOH B 17 317 551 HOH HOH . U 7 HOH B 18 318 552 HOH HOH . U 7 HOH B 19 319 553 HOH HOH . U 7 HOH B 20 320 554 HOH HOH . U 7 HOH B 21 321 555 HOH HOH . U 7 HOH B 22 322 558 HOH HOH . U 7 HOH B 23 323 559 HOH HOH . U 7 HOH B 24 324 560 HOH HOH . U 7 HOH B 25 325 561 HOH HOH . U 7 HOH B 26 326 562 HOH HOH . U 7 HOH B 27 327 563 HOH HOH . U 7 HOH B 28 328 564 HOH HOH . U 7 HOH B 29 329 565 HOH HOH . U 7 HOH B 30 330 576 HOH HOH . U 7 HOH B 31 331 579 HOH HOH . U 7 HOH B 32 332 587 HOH HOH . U 7 HOH B 33 333 588 HOH HOH . U 7 HOH B 34 334 594 HOH HOH . U 7 HOH B 35 335 595 HOH HOH . U 7 HOH B 36 336 596 HOH HOH . U 7 HOH B 37 337 597 HOH HOH . U 7 HOH B 38 338 598 HOH HOH . U 7 HOH B 39 339 599 HOH HOH . U 7 HOH B 40 340 600 HOH HOH . U 7 HOH B 41 341 601 HOH HOH . U 7 HOH B 42 342 602 HOH HOH . U 7 HOH B 43 343 603 HOH HOH . U 7 HOH B 44 344 604 HOH HOH . U 7 HOH B 45 345 605 HOH HOH . U 7 HOH B 46 346 606 HOH HOH . U 7 HOH B 47 347 607 HOH HOH . U 7 HOH B 48 348 608 HOH HOH . U 7 HOH B 49 349 609 HOH HOH . U 7 HOH B 50 350 610 HOH HOH . U 7 HOH B 51 351 611 HOH HOH . U 7 HOH B 52 352 612 HOH HOH . U 7 HOH B 53 353 616 HOH HOH . U 7 HOH B 54 354 624 HOH HOH . U 7 HOH B 55 355 626 HOH HOH . U 7 HOH B 56 356 632 HOH HOH . U 7 HOH B 57 357 633 HOH HOH . U 7 HOH B 58 358 634 HOH HOH . U 7 HOH B 59 359 635 HOH HOH . U 7 HOH B 60 360 636 HOH HOH . U 7 HOH B 61 361 637 HOH HOH . U 7 HOH B 62 362 638 HOH HOH . U 7 HOH B 63 363 639 HOH HOH . U 7 HOH B 64 364 640 HOH HOH . U 7 HOH B 65 365 641 HOH HOH . U 7 HOH B 66 366 654 HOH HOH . U 7 HOH B 67 367 655 HOH HOH . U 7 HOH B 68 368 656 HOH HOH . U 7 HOH B 69 369 657 HOH HOH . U 7 HOH B 70 370 658 HOH HOH . U 7 HOH B 71 371 659 HOH HOH . U 7 HOH B 72 372 660 HOH HOH . U 7 HOH B 73 373 661 HOH HOH . U 7 HOH B 74 374 662 HOH HOH . U 7 HOH B 75 375 663 HOH HOH . U 7 HOH B 76 376 664 HOH HOH . U 7 HOH B 77 377 665 HOH HOH . U 7 HOH B 78 378 666 HOH HOH . U 7 HOH B 79 379 667 HOH HOH . U 7 HOH B 80 380 668 HOH HOH . U 7 HOH B 81 381 669 HOH HOH . U 7 HOH B 82 382 671 HOH HOH . U 7 HOH B 83 383 677 HOH HOH . U 7 HOH B 84 384 678 HOH HOH . U 7 HOH B 85 385 682 HOH HOH . U 7 HOH B 86 386 683 HOH HOH . U 7 HOH B 87 387 685 HOH HOH . U 7 HOH B 88 388 686 HOH HOH . U 7 HOH B 89 389 687 HOH HOH . U 7 HOH B 90 390 689 HOH HOH . U 7 HOH B 91 391 690 HOH HOH . U 7 HOH B 92 392 693 HOH HOH . U 7 HOH B 93 393 694 HOH HOH . U 7 HOH B 94 394 697 HOH HOH . U 7 HOH B 95 395 698 HOH HOH . U 7 HOH B 96 396 704 HOH HOH . U 7 HOH B 97 397 705 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 6 43.51 15.125 -7.585 1 67.09 ? C1 GOL 208 A 1 HETATM 2 O O1 GOL . . . J 6 43.926 16.369 -7.05 1 67.25 ? O1 GOL 208 A 1 HETATM 3 C C2 GOL . . . J 6 44.716 14.228 -7.731 1 66.95 ? C2 GOL 208 A 1 HETATM 4 O O2 GOL . . . J 6 45.346 14.463 -8.995 1 62.93 ? O2 GOL 208 A 1 HETATM 5 C C3 GOL . . . J 6 44.333 12.776 -7.579 1 65.53 ? C3 GOL 208 A 1 HETATM 6 O O3 GOL . . . J 6 45.457 11.925 -7.755 1 66.1 ? O3 GOL 208 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #