data_4JJF
#
_model_server_result.job_id            rfY6ye3jFTsEgE-6aqnesQ 
_model_server_result.datetime_utc      '2024-11-07 00:30:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jjf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4JJF 
#
_exptl.entry_id    4JJF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              155.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(naphthalen-2-yl)methanimine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4JJF 
_cell.length_a            141.18 
_cell.length_b            141.18 
_cell.length_c            96.46 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JJF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 172 A CYS 172 1_555 C FE FE9 . A FE9 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc2 C FE FE9 . A FE9 401 1_555 D C1B N2I . A N2I 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc3 B SG CYS 172 B CYS 172 1_555 E FE FE9 . B FE9 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc4 E FE FE9 . B FE9 401 1_555 F C1B N2I . B N2I 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
#
_chem_comp.formula           'C11 H9 N' 
_chem_comp.formula_weight    155.196 
_chem_comp.id                N2I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(naphthalen-2-yl)methanimine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C7 N2I doub 307 n y 
C6 C5 N2I sing 308 n y 
C7 C8 N2I sing 309 n y 
C5 C4A N2I doub 310 n y 
C8 C8A N2I doub 311 n y 
C4A C8A N2I sing 312 n y 
C4A C4 N2I sing 313 n y 
C8A C1 N2I sing 314 n y 
C4 C3 N2I doub 315 n y 
C1 C2 N2I doub 316 n y 
C3 C2 N2I sing 317 n y 
C2 N1B N2I sing 318 n n 
N1B C1B N2I doub 319 n n 
C1B H1 N2I sing 320 n n 
C1B H2 N2I sing 321 n n 
C3 H3 N2I sing 322 n n 
C4 H4 N2I sing 323 n n 
C1 H5 N2I sing 324 n n 
C5 H6 N2I sing 325 n n 
C6 H7 N2I sing 326 n n 
C7 H8 N2I sing 327 n n 
C8 H9 N2I sing 328 n n 
#
_atom_sites.entry_id                     4JJF 
_atom_sites.fract_transf_matrix[1][1]    0.007083 
_atom_sites.fract_transf_matrix[1][2]    0.004089 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010367 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE9 A 1 401 401 FE9 I2C . 
D 3 N2I A 1 402 405 N2I N2I . 
E 2 FE9 B 1 401 401 FE9 I2C . 
F 3 N2I B 1 402 405 N2I N2I . 
G 4 HOH A 1 501 2 HOH HOH . 
G 4 HOH A 2 502 6 HOH HOH . 
G 4 HOH A 3 503 7 HOH HOH . 
G 4 HOH A 4 504 8 HOH HOH . 
G 4 HOH A 5 505 9 HOH HOH . 
G 4 HOH A 6 506 10 HOH HOH . 
G 4 HOH A 7 507 11 HOH HOH . 
G 4 HOH A 8 508 12 HOH HOH . 
G 4 HOH A 9 509 14 HOH HOH . 
G 4 HOH A 10 510 15 HOH HOH . 
G 4 HOH A 11 511 18 HOH HOH . 
G 4 HOH A 12 512 20 HOH HOH . 
G 4 HOH A 13 513 24 HOH HOH . 
G 4 HOH A 14 514 25 HOH HOH . 
G 4 HOH A 15 515 28 HOH HOH . 
G 4 HOH A 16 516 29 HOH HOH . 
G 4 HOH A 17 517 30 HOH HOH . 
G 4 HOH A 18 518 31 HOH HOH . 
G 4 HOH A 19 519 32 HOH HOH . 
G 4 HOH A 20 520 33 HOH HOH . 
G 4 HOH A 21 521 35 HOH HOH . 
G 4 HOH A 22 522 38 HOH HOH . 
G 4 HOH A 23 523 40 HOH HOH . 
G 4 HOH A 24 524 42 HOH HOH . 
G 4 HOH A 25 525 43 HOH HOH . 
G 4 HOH A 26 526 44 HOH HOH . 
G 4 HOH A 27 527 46 HOH HOH . 
G 4 HOH A 28 528 47 HOH HOH . 
G 4 HOH A 29 529 48 HOH HOH . 
G 4 HOH A 30 530 49 HOH HOH . 
G 4 HOH A 31 531 53 HOH HOH . 
G 4 HOH A 32 532 54 HOH HOH . 
G 4 HOH A 33 533 56 HOH HOH . 
G 4 HOH A 34 534 58 HOH HOH . 
G 4 HOH A 35 535 61 HOH HOH . 
G 4 HOH A 36 536 62 HOH HOH . 
G 4 HOH A 37 537 64 HOH HOH . 
G 4 HOH A 38 538 65 HOH HOH . 
G 4 HOH A 39 539 67 HOH HOH . 
G 4 HOH A 40 540 68 HOH HOH . 
G 4 HOH A 41 541 69 HOH HOH . 
G 4 HOH A 42 542 74 HOH HOH . 
G 4 HOH A 43 543 75 HOH HOH . 
G 4 HOH A 44 544 76 HOH HOH . 
G 4 HOH A 45 545 77 HOH HOH . 
G 4 HOH A 46 546 78 HOH HOH . 
G 4 HOH A 47 547 79 HOH HOH . 
G 4 HOH A 48 548 81 HOH HOH . 
G 4 HOH A 49 549 82 HOH HOH . 
G 4 HOH A 50 550 84 HOH HOH . 
G 4 HOH A 51 551 85 HOH HOH . 
G 4 HOH A 52 552 86 HOH HOH . 
G 4 HOH A 53 553 87 HOH HOH . 
G 4 HOH A 54 554 88 HOH HOH . 
G 4 HOH A 55 555 89 HOH HOH . 
G 4 HOH A 56 556 90 HOH HOH . 
G 4 HOH A 57 557 93 HOH HOH . 
G 4 HOH A 58 558 94 HOH HOH . 
G 4 HOH A 59 559 97 HOH HOH . 
G 4 HOH A 60 560 98 HOH HOH . 
G 4 HOH A 61 561 103 HOH HOH . 
G 4 HOH A 62 562 104 HOH HOH . 
G 4 HOH A 63 563 105 HOH HOH . 
G 4 HOH A 64 564 106 HOH HOH . 
G 4 HOH A 65 565 107 HOH HOH . 
G 4 HOH A 66 566 108 HOH HOH . 
G 4 HOH A 67 567 111 HOH HOH . 
G 4 HOH A 68 568 112 HOH HOH . 
G 4 HOH A 69 569 113 HOH HOH . 
G 4 HOH A 70 570 114 HOH HOH . 
G 4 HOH A 71 571 115 HOH HOH . 
G 4 HOH A 72 572 116 HOH HOH . 
G 4 HOH A 73 573 118 HOH HOH . 
G 4 HOH A 74 574 119 HOH HOH . 
G 4 HOH A 75 575 122 HOH HOH . 
G 4 HOH A 76 576 123 HOH HOH . 
G 4 HOH A 77 577 124 HOH HOH . 
G 4 HOH A 78 578 125 HOH HOH . 
G 4 HOH A 79 579 126 HOH HOH . 
G 4 HOH A 80 580 128 HOH HOH . 
G 4 HOH A 81 581 129 HOH HOH . 
G 4 HOH A 82 582 131 HOH HOH . 
G 4 HOH A 83 583 132 HOH HOH . 
G 4 HOH A 84 584 133 HOH HOH . 
G 4 HOH A 85 585 140 HOH HOH . 
G 4 HOH A 86 586 144 HOH HOH . 
G 4 HOH A 87 587 148 HOH HOH . 
G 4 HOH A 88 588 149 HOH HOH . 
G 4 HOH A 89 589 150 HOH HOH . 
G 4 HOH A 90 590 151 HOH HOH . 
G 4 HOH A 91 591 152 HOH HOH . 
H 4 HOH B 1 501 1 HOH HOH . 
H 4 HOH B 2 502 3 HOH HOH . 
H 4 HOH B 3 503 4 HOH HOH . 
H 4 HOH B 4 504 5 HOH HOH . 
H 4 HOH B 5 505 13 HOH HOH . 
H 4 HOH B 6 506 16 HOH HOH . 
H 4 HOH B 7 507 17 HOH HOH . 
H 4 HOH B 8 508 19 HOH HOH . 
H 4 HOH B 9 509 21 HOH HOH . 
H 4 HOH B 10 510 22 HOH HOH . 
H 4 HOH B 11 511 23 HOH HOH . 
H 4 HOH B 12 512 26 HOH HOH . 
H 4 HOH B 13 513 27 HOH HOH . 
H 4 HOH B 14 514 34 HOH HOH . 
H 4 HOH B 15 515 36 HOH HOH . 
H 4 HOH B 16 516 37 HOH HOH . 
H 4 HOH B 17 517 39 HOH HOH . 
H 4 HOH B 18 518 41 HOH HOH . 
H 4 HOH B 19 519 45 HOH HOH . 
H 4 HOH B 20 520 50 HOH HOH . 
H 4 HOH B 21 521 51 HOH HOH . 
H 4 HOH B 22 522 52 HOH HOH . 
H 4 HOH B 23 523 55 HOH HOH . 
H 4 HOH B 24 524 57 HOH HOH . 
H 4 HOH B 25 525 59 HOH HOH . 
H 4 HOH B 26 526 60 HOH HOH . 
H 4 HOH B 27 527 63 HOH HOH . 
H 4 HOH B 28 528 66 HOH HOH . 
H 4 HOH B 29 529 70 HOH HOH . 
H 4 HOH B 30 530 71 HOH HOH . 
H 4 HOH B 31 531 72 HOH HOH . 
H 4 HOH B 32 532 73 HOH HOH . 
H 4 HOH B 33 533 80 HOH HOH . 
H 4 HOH B 34 534 83 HOH HOH . 
H 4 HOH B 35 535 91 HOH HOH . 
H 4 HOH B 36 536 92 HOH HOH . 
H 4 HOH B 37 537 95 HOH HOH . 
H 4 HOH B 38 538 96 HOH HOH . 
H 4 HOH B 39 539 99 HOH HOH . 
H 4 HOH B 40 540 100 HOH HOH . 
H 4 HOH B 41 541 101 HOH HOH . 
H 4 HOH B 42 542 102 HOH HOH . 
H 4 HOH B 43 543 109 HOH HOH . 
H 4 HOH B 44 544 110 HOH HOH . 
H 4 HOH B 45 545 117 HOH HOH . 
H 4 HOH B 46 546 120 HOH HOH . 
H 4 HOH B 47 547 121 HOH HOH . 
H 4 HOH B 48 548 127 HOH HOH . 
H 4 HOH B 49 549 130 HOH HOH . 
H 4 HOH B 50 550 134 HOH HOH . 
H 4 HOH B 51 551 135 HOH HOH . 
H 4 HOH B 52 552 136 HOH HOH . 
H 4 HOH B 53 553 137 HOH HOH . 
H 4 HOH B 54 554 138 HOH HOH . 
H 4 HOH B 55 555 139 HOH HOH . 
H 4 HOH B 56 556 141 HOH HOH . 
H 4 HOH B 57 557 142 HOH HOH . 
H 4 HOH B 58 558 143 HOH HOH . 
H 4 HOH B 59 559 145 HOH HOH . 
H 4 HOH B 60 560 146 HOH HOH . 
H 4 HOH B 61 561 147 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B N2I . . . D 3 -16.48 -16.069 -22.104 1 39.3 ? C1B N2I 402 A 1 
HETATM 2 N N1B N2I . . . D 3 -17.522 -15.835 -22.752 1 47.37 ? N1B N2I 402 A 1 
HETATM 3 C C2 N2I . . . D 3 -17.864 -16.164 -24.06 1 62.15 ? C2 N2I 402 A 1 
HETATM 4 C C3 N2I . . . D 3 -19.068 -16.885 -24.172 1 63.03 ? C3 N2I 402 A 1 
HETATM 5 C C4 N2I . . . D 3 -19.543 -17.281 -25.421 1 65.95 ? C4 N2I 402 A 1 
HETATM 6 C C4A N2I . . . D 3 -18.809 -16.947 -26.561 1 66.32 ? C4A N2I 402 A 1 
HETATM 7 C C8A N2I . . . D 3 -17.602 -16.208 -26.449 1 65.51 ? C8A N2I 402 A 1 
HETATM 8 C C1 N2I . . . D 3 -17.125 -15.793 -25.195 1 60.07 ? C1 N2I 402 A 1 
HETATM 9 C C5 N2I . . . D 3 -19.305 -17.348 -27.812 1 71.54 ? C5 N2I 402 A 1 
HETATM 10 C C6 N2I . . . D 3 -18.574 -17.023 -28.958 1 79.77 ? C6 N2I 402 A 1 
HETATM 11 C C7 N2I . . . D 3 -17.374 -16.299 -28.845 1 79.07 ? C7 N2I 402 A 1 
HETATM 12 C C8 N2I . . . D 3 -16.881 -15.889 -27.604 1 73.87 ? C8 N2I 402 A 1 
#
_model_server_stats.io_time_ms              104 
_model_server_stats.parse_time_ms           101 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#