data_4JJG # _model_server_result.job_id fFJ7vJ2550crdft-gYDdsQ _model_server_result.datetime_utc '2024-11-07 00:41:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jjg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4JJG # _exptl.entry_id 4JJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.297 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methyl-1-[(4-methylbenzyl)sulfonyl]methanamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JJG _cell.length_a 141.88 _cell.length_b 141.88 _cell.length_c 95.48 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O2 FE9 . A FE9 401 1_555 D C1 IC9 . A IC9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale2 E O2 FE9 . B FE9 401 1_555 F C1 IC9 . B IC9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? metalc ? metalc1 A SG CYS 172 A CYS 172 1_555 C FE FE9 . A FE9 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc2 C FE FE9 . A FE9 401 1_555 D N IC9 . A IC9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc3 C FE FE9 . A FE9 401 1_555 D C1 IC9 . A IC9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc4 B SG CYS 172 B CYS 172 1_555 E FE FE9 . B FE9 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc5 E FE FE9 . B FE9 401 1_555 F N IC9 . B IC9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc6 E FE FE9 . B FE9 401 1_555 F C1 IC9 . B IC9 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? # _chem_comp.formula 'C10 H15 N O2 S' _chem_comp.formula_weight 213.297 _chem_comp.id IC9 _chem_comp.mon_nstd_flag . _chem_comp.name N-methyl-1-[(4-methylbenzyl)sulfonyl]methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7M C7 IC9 sing 222 n n C6 C7 IC9 doub 223 n y C6 C5 IC9 sing 224 n y C7 C8 IC9 sing 225 n y O1 S IC9 doub 226 n n C5 C4 IC9 doub 227 n y C8 C9 IC9 doub 228 n y C4 C9 IC9 sing 229 n y C4 C3 IC9 sing 230 n n C2 S IC9 sing 231 n n C2 N IC9 sing 232 n n S C3 IC9 sing 233 n n S O2 IC9 doub 234 n n C1 N IC9 sing 235 n n C3 H1 IC9 sing 236 n n C3 H2 IC9 sing 237 n n C9 H3 IC9 sing 238 n n C8 H4 IC9 sing 239 n n C7M H5 IC9 sing 240 n n C7M H6 IC9 sing 241 n n C7M H7 IC9 sing 242 n n C6 H8 IC9 sing 243 n n C5 H9 IC9 sing 244 n n C2 H10 IC9 sing 245 n n C2 H11 IC9 sing 246 n n N H12 IC9 sing 247 n n C1 H14 IC9 sing 248 n n C1 H15 IC9 sing 249 n n C1 H16 IC9 sing 250 n n # _atom_sites.entry_id 4JJG _atom_sites.fract_transf_matrix[1][1] 0.007048 _atom_sites.fract_transf_matrix[1][2] 0.004069 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE9 A 1 401 401 FE9 FE9 . D 3 IC9 A 1 402 405 IC9 IC9 . E 2 FE9 B 1 401 401 FE9 FE9 . F 3 IC9 B 1 402 405 IC9 IC9 . G 4 HOH A 1 501 2 HOH HOH . G 4 HOH A 2 502 4 HOH HOH . G 4 HOH A 3 503 6 HOH HOH . G 4 HOH A 4 504 8 HOH HOH . G 4 HOH A 5 505 10 HOH HOH . G 4 HOH A 6 506 13 HOH HOH . G 4 HOH A 7 507 14 HOH HOH . G 4 HOH A 8 508 17 HOH HOH . G 4 HOH A 9 509 20 HOH HOH . G 4 HOH A 10 510 21 HOH HOH . G 4 HOH A 11 511 23 HOH HOH . G 4 HOH A 12 512 24 HOH HOH . G 4 HOH A 13 513 27 HOH HOH . G 4 HOH A 14 514 29 HOH HOH . H 4 HOH B 1 501 1 HOH HOH . H 4 HOH B 2 502 3 HOH HOH . H 4 HOH B 3 503 5 HOH HOH . H 4 HOH B 4 504 7 HOH HOH . H 4 HOH B 5 505 9 HOH HOH . H 4 HOH B 6 506 11 HOH HOH . H 4 HOH B 7 507 12 HOH HOH . H 4 HOH B 8 508 15 HOH HOH . H 4 HOH B 9 509 16 HOH HOH . H 4 HOH B 10 510 18 HOH HOH . H 4 HOH B 11 511 19 HOH HOH . H 4 HOH B 12 512 22 HOH HOH . H 4 HOH B 13 513 25 HOH HOH . H 4 HOH B 14 514 26 HOH HOH . H 4 HOH B 15 515 28 HOH HOH . H 4 HOH B 16 516 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 IC9 . . . D 3 -2.398 -24.236 -29.321 1 77.37 ? O1 IC9 402 A 1 HETATM 2 S S IC9 . . . D 3 -2.861 -24.026 -27.978 1 73.43 ? S IC9 402 A 1 HETATM 3 O O2 IC9 . . . D 3 -2.527 -25.183 -27.182 1 79.27 ? O2 IC9 402 A 1 HETATM 4 C C3 IC9 . . . D 3 -2.146 -22.667 -27.281 1 83.27 ? C3 IC9 402 A 1 HETATM 5 C C4 IC9 . . . D 3 -2.104 -21.349 -28.056 1 86.92 ? C4 IC9 402 A 1 HETATM 6 C C9 IC9 . . . D 3 -2.774 -20.224 -27.538 1 90.98 ? C9 IC9 402 A 1 HETATM 7 C C8 IC9 . . . D 3 -2.75 -18.992 -28.207 1 88.86 ? C8 IC9 402 A 1 HETATM 8 C C7 IC9 . . . D 3 -2.042 -18.875 -29.407 1 88.2 ? C7 IC9 402 A 1 HETATM 9 C C7M IC9 . . . D 3 -2.018 -17.56 -30.15 1 83.46 ? C7M IC9 402 A 1 HETATM 10 C C6 IC9 . . . D 3 -1.359 -19.989 -29.921 1 90.73 ? C6 IC9 402 A 1 HETATM 11 C C5 IC9 . . . D 3 -1.379 -21.22 -29.249 1 86.07 ? C5 IC9 402 A 1 HETATM 12 C C2 IC9 . . . D 3 -4.444 -23.943 -28.025 1 56.89 ? C2 IC9 402 A 1 HETATM 13 N N IC9 . . . D 3 -5.442 -23.283 -27.289 1 41.78 ? N IC9 402 A 1 HETATM 14 C C1 IC9 . . . D 3 -6.002 -22.356 -27.898 1 32.74 ? C1 IC9 402 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #