data_4JJZ
#
_model_server_result.job_id            DHJOkuHuRUjBUk83F8NArA 
_model_server_result.datetime_utc      '2024-10-15 08:17:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jjz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":603}' 
#
_entry.id    4JJZ 
#
_exptl.entry_id    4JJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.005 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'formyl phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JJZ 
_cell.length_a            91.17 
_cell.length_b            212.976 
_cell.length_c            53.444 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 75 A THR 75 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc2 A OE2 GLU 301 A GLU 301 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc3 D O1B ADP . A ADP 602 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc4 E O4 XPO . A XPO 603 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc5 G MG MG . A MG 605 1_555 N O HOH . A HOH 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc6 G MG MG . A MG 605 1_555 N O HOH . A HOH 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc7 B OG1 THR 75 B THR 75 1_555 M MG MG . B MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc8 B OE2 GLU 301 B GLU 301 1_555 M MG MG . B MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc9 I O1B ADP . B ADP 602 1_555 M MG MG . B MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc10 J O3 XPO . B XPO 603 1_555 M MG MG . B MG 606 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc11 J O1 XPO . B XPO 603 1_555 M MG MG . B MG 606 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc12 M MG MG . B MG 606 1_555 O O HOH . B HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc13 M MG MG . B MG 606 1_555 O O HOH . B HOH 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
#
_chem_comp.formula           'C H3 O5 P' 
_chem_comp.formula_weight    126.005 
_chem_comp.id                XPO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'formyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C XPO doub 487 n n 
C O2 XPO sing 488 n n 
O3 P XPO doub 489 n n 
O2 P XPO sing 490 n n 
P O1 XPO sing 491 n n 
P O4 XPO sing 492 n n 
C H1 XPO sing 493 n n 
O1 H2 XPO sing 494 n n 
O4 H3 XPO sing 495 n n 
#
_atom_sites.entry_id                     4JJZ 
_atom_sites.fract_transf_matrix[1][1]    0.010969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004695 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018711 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 601 601 SO4 SO4 . 
D 3 ADP A 1 602 602 ADP ADP . 
E 4 XPO A 1 603 603 XPO XPO . 
F 5 TOE A 1 604 604 TOE TOE . 
G 6 MG A 1 605 605 MG MG . 
H 2 SO4 B 1 601 601 SO4 SO4 . 
I 3 ADP B 1 602 602 ADP ADP . 
J 4 XPO B 1 603 603 XPO XPO . 
K 5 TOE B 1 604 604 TOE TOE . 
L 7 1PE B 1 605 605 1PE 1PE . 
M 6 MG B 1 606 606 MG MG . 
N 8 HOH A 1 701 701 HOH HOH . 
N 8 HOH A 2 702 702 HOH HOH . 
N 8 HOH A 3 703 703 HOH HOH . 
N 8 HOH A 4 704 704 HOH HOH . 
N 8 HOH A 5 705 705 HOH HOH . 
N 8 HOH A 6 706 706 HOH HOH . 
N 8 HOH A 7 707 707 HOH HOH . 
N 8 HOH A 8 708 708 HOH HOH . 
N 8 HOH A 9 709 709 HOH HOH . 
N 8 HOH A 10 710 710 HOH HOH . 
N 8 HOH A 11 711 711 HOH HOH . 
N 8 HOH A 12 712 712 HOH HOH . 
N 8 HOH A 13 713 713 HOH HOH . 
N 8 HOH A 14 714 714 HOH HOH . 
N 8 HOH A 15 715 715 HOH HOH . 
N 8 HOH A 16 716 716 HOH HOH . 
N 8 HOH A 17 717 717 HOH HOH . 
N 8 HOH A 18 718 718 HOH HOH . 
N 8 HOH A 19 719 719 HOH HOH . 
N 8 HOH A 20 720 720 HOH HOH . 
N 8 HOH A 21 721 721 HOH HOH . 
N 8 HOH A 22 722 722 HOH HOH . 
N 8 HOH A 23 723 723 HOH HOH . 
N 8 HOH A 24 724 724 HOH HOH . 
N 8 HOH A 25 725 725 HOH HOH . 
N 8 HOH A 26 726 726 HOH HOH . 
N 8 HOH A 27 727 727 HOH HOH . 
N 8 HOH A 28 728 728 HOH HOH . 
N 8 HOH A 29 729 729 HOH HOH . 
N 8 HOH A 30 730 730 HOH HOH . 
N 8 HOH A 31 731 731 HOH HOH . 
N 8 HOH A 32 732 732 HOH HOH . 
N 8 HOH A 33 733 733 HOH HOH . 
N 8 HOH A 34 734 734 HOH HOH . 
N 8 HOH A 35 735 735 HOH HOH . 
N 8 HOH A 36 736 736 HOH HOH . 
N 8 HOH A 37 737 737 HOH HOH . 
N 8 HOH A 38 738 738 HOH HOH . 
N 8 HOH A 39 739 739 HOH HOH . 
N 8 HOH A 40 740 740 HOH HOH . 
N 8 HOH A 41 741 741 HOH HOH . 
N 8 HOH A 42 742 742 HOH HOH . 
N 8 HOH A 43 743 743 HOH HOH . 
N 8 HOH A 44 744 744 HOH HOH . 
N 8 HOH A 45 745 745 HOH HOH . 
N 8 HOH A 46 746 746 HOH HOH . 
N 8 HOH A 47 747 747 HOH HOH . 
N 8 HOH A 48 748 748 HOH HOH . 
N 8 HOH A 49 749 749 HOH HOH . 
N 8 HOH A 50 750 750 HOH HOH . 
N 8 HOH A 51 751 751 HOH HOH . 
N 8 HOH A 52 752 752 HOH HOH . 
N 8 HOH A 53 753 753 HOH HOH . 
N 8 HOH A 54 754 754 HOH HOH . 
N 8 HOH A 55 755 755 HOH HOH . 
N 8 HOH A 56 756 756 HOH HOH . 
N 8 HOH A 57 757 757 HOH HOH . 
N 8 HOH A 58 758 758 HOH HOH . 
N 8 HOH A 59 759 759 HOH HOH . 
N 8 HOH A 60 760 760 HOH HOH . 
N 8 HOH A 61 761 761 HOH HOH . 
N 8 HOH A 62 762 762 HOH HOH . 
N 8 HOH A 63 763 763 HOH HOH . 
N 8 HOH A 64 764 764 HOH HOH . 
N 8 HOH A 65 765 765 HOH HOH . 
N 8 HOH A 66 766 766 HOH HOH . 
N 8 HOH A 67 767 767 HOH HOH . 
N 8 HOH A 68 768 768 HOH HOH . 
N 8 HOH A 69 769 769 HOH HOH . 
N 8 HOH A 70 770 770 HOH HOH . 
N 8 HOH A 71 771 771 HOH HOH . 
N 8 HOH A 72 772 772 HOH HOH . 
N 8 HOH A 73 773 773 HOH HOH . 
N 8 HOH A 74 774 774 HOH HOH . 
N 8 HOH A 75 775 775 HOH HOH . 
N 8 HOH A 76 776 776 HOH HOH . 
N 8 HOH A 77 777 777 HOH HOH . 
N 8 HOH A 78 778 778 HOH HOH . 
N 8 HOH A 79 779 779 HOH HOH . 
N 8 HOH A 80 780 780 HOH HOH . 
N 8 HOH A 81 781 781 HOH HOH . 
N 8 HOH A 82 782 782 HOH HOH . 
N 8 HOH A 83 783 783 HOH HOH . 
N 8 HOH A 84 784 784 HOH HOH . 
N 8 HOH A 85 785 785 HOH HOH . 
N 8 HOH A 86 786 786 HOH HOH . 
O 8 HOH B 1 701 701 HOH HOH . 
O 8 HOH B 2 702 702 HOH HOH . 
O 8 HOH B 3 703 703 HOH HOH . 
O 8 HOH B 4 704 704 HOH HOH . 
O 8 HOH B 5 705 705 HOH HOH . 
O 8 HOH B 6 706 706 HOH HOH . 
O 8 HOH B 7 707 707 HOH HOH . 
O 8 HOH B 8 708 708 HOH HOH . 
O 8 HOH B 9 709 709 HOH HOH . 
O 8 HOH B 10 710 710 HOH HOH . 
O 8 HOH B 11 711 711 HOH HOH . 
O 8 HOH B 12 712 712 HOH HOH . 
O 8 HOH B 13 713 713 HOH HOH . 
O 8 HOH B 14 714 714 HOH HOH . 
O 8 HOH B 15 715 715 HOH HOH . 
O 8 HOH B 16 716 716 HOH HOH . 
O 8 HOH B 17 717 717 HOH HOH . 
O 8 HOH B 18 718 718 HOH HOH . 
O 8 HOH B 19 719 719 HOH HOH . 
O 8 HOH B 20 720 720 HOH HOH . 
O 8 HOH B 21 721 721 HOH HOH . 
O 8 HOH B 22 722 722 HOH HOH . 
O 8 HOH B 23 723 723 HOH HOH . 
O 8 HOH B 24 724 724 HOH HOH . 
O 8 HOH B 25 725 725 HOH HOH . 
O 8 HOH B 26 726 726 HOH HOH . 
O 8 HOH B 27 727 727 HOH HOH . 
O 8 HOH B 28 728 728 HOH HOH . 
O 8 HOH B 29 729 729 HOH HOH . 
O 8 HOH B 30 730 730 HOH HOH . 
O 8 HOH B 31 731 731 HOH HOH . 
O 8 HOH B 32 732 732 HOH HOH . 
O 8 HOH B 33 733 733 HOH HOH . 
O 8 HOH B 34 734 734 HOH HOH . 
O 8 HOH B 35 735 735 HOH HOH . 
O 8 HOH B 36 736 736 HOH HOH . 
O 8 HOH B 37 737 737 HOH HOH . 
O 8 HOH B 38 738 738 HOH HOH . 
O 8 HOH B 39 739 739 HOH HOH . 
O 8 HOH B 40 740 740 HOH HOH . 
O 8 HOH B 41 741 741 HOH HOH . 
O 8 HOH B 42 742 742 HOH HOH . 
O 8 HOH B 43 743 743 HOH HOH . 
O 8 HOH B 44 744 744 HOH HOH . 
O 8 HOH B 45 745 745 HOH HOH . 
O 8 HOH B 46 746 746 HOH HOH . 
O 8 HOH B 47 747 747 HOH HOH . 
O 8 HOH B 48 748 748 HOH HOH . 
O 8 HOH B 49 749 749 HOH HOH . 
O 8 HOH B 50 750 750 HOH HOH . 
O 8 HOH B 51 751 751 HOH HOH . 
O 8 HOH B 52 752 752 HOH HOH . 
O 8 HOH B 53 753 753 HOH HOH . 
O 8 HOH B 54 754 754 HOH HOH . 
O 8 HOH B 55 755 755 HOH HOH . 
O 8 HOH B 56 756 756 HOH HOH . 
O 8 HOH B 57 757 757 HOH HOH . 
O 8 HOH B 58 758 758 HOH HOH . 
O 8 HOH B 59 759 759 HOH HOH . 
O 8 HOH B 60 760 760 HOH HOH . 
O 8 HOH B 61 761 761 HOH HOH . 
O 8 HOH B 62 762 762 HOH HOH . 
O 8 HOH B 63 763 763 HOH HOH . 
O 8 HOH B 64 764 764 HOH HOH . 
O 8 HOH B 65 765 765 HOH HOH . 
O 8 HOH B 66 766 766 HOH HOH . 
O 8 HOH B 67 767 767 HOH HOH . 
O 8 HOH B 68 768 768 HOH HOH . 
O 8 HOH B 69 769 769 HOH HOH . 
O 8 HOH B 70 770 770 HOH HOH . 
O 8 HOH B 71 771 771 HOH HOH . 
O 8 HOH B 72 772 772 HOH HOH . 
O 8 HOH B 73 773 773 HOH HOH . 
O 8 HOH B 74 774 774 HOH HOH . 
O 8 HOH B 75 775 775 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C XPO . A . J 4 -18.452 26.143 61.152 0.5 19.54 ? C XPO 603 B 1 
HETATM 2 C C XPO . B . J 4 -21.052 26.535 56.411 0.5 22.53 ? C XPO 603 B 1 
HETATM 3 O O XPO . A . J 4 -18.654 25.456 62.12 0.5 18.53 ? O XPO 603 B 1 
HETATM 4 O O XPO . B . J 4 -21.973 26.127 55.753 0.5 21.34 ? O XPO 603 B 1 
HETATM 5 P P XPO . A . J 4 -19.426 27.814 59.473 0.5 22.03 ? P XPO 603 B 1 
HETATM 6 P P XPO . B . J 4 -20.048 27.676 58.512 0.5 29.55 ? P XPO 603 B 1 
HETATM 7 O O1 XPO . A . J 4 -19.06 29.262 59.461 0.5 21.78 ? O1 XPO 603 B 1 
HETATM 8 O O1 XPO . B . J 4 -20.4 27.338 59.95 0.5 29.02 ? O1 XPO 603 B 1 
HETATM 9 O O2 XPO . A . J 4 -19.284 27.319 60.989 0.5 20.65 ? O2 XPO 603 B 1 
HETATM 10 O O2 XPO . B . J 4 -21.331 27.19 57.663 0.5 24.46 ? O2 XPO 603 B 1 
HETATM 11 O O3 XPO . A . J 4 -20.903 27.544 59.178 0.5 22.13 ? O3 XPO 603 B 1 
HETATM 12 O O3 XPO . B . J 4 -19.984 29.136 58.198 0.5 26.33 ? O3 XPO 603 B 1 
HETATM 13 O O4 XPO . A . J 4 -18.369 26.912 58.849 0.5 22.3 ? O4 XPO 603 B 1 
HETATM 14 O O4 XPO . B . J 4 -18.884 26.9 57.917 0.5 29.24 ? O4 XPO 603 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#