data_4JK6 # _model_server_result.job_id ZpLO1JkkTpGSX4hIuVJO2Q _model_server_result.datetime_utc '2024-12-01 18:23:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":306}' # _entry.id 4JK6 # _exptl.entry_id 4JK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JK6 _cell.length_a 121.219 _cell.length_b 121.219 _cell.length_c 42.731 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 42 1_555 A SG CYS 47 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf2 A SG CYS 39 A CYS 50 1_555 A SG CYS 110 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 135 A CYS 136 1_555 A SG CYS 204 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 A SG CYS 167 A CYS 168 1_555 A SG CYS 183 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 194 A CYS 191 1_555 A SG CYS 222 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? covale ? covale1 B SG CYS 2 B CYS 2 1_555 I C8 ZBR . B ZBR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale2 B SG CYS 9 B CYS 9 1_555 I C7 ZBR . B ZBR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? covale ? covale3 B C ARG 12 B ARG 12 1_555 B N DBB 13 B DBB 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 sing covale ? covale4 B C DBB 13 B DBB 13 1_555 B N SER 14 B SER 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 sing covale ? covale5 B SG CYS 16 B CYS 16 1_555 I C9 ZBR . B ZBR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale6 B C GLY 17 B GLY 17 1_555 B N NH2 18 B NH2 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 sing # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 254 n n O1 H1 P6G sing 255 n n C2 C3 P6G sing 256 n n C2 H21 P6G sing 257 n n C2 H22 P6G sing 258 n n C3 O4 P6G sing 259 n n C3 H31 P6G sing 260 n n C3 H32 P6G sing 261 n n O4 C5 P6G sing 262 n n C5 C6 P6G sing 263 n n C5 H51 P6G sing 264 n n C5 H52 P6G sing 265 n n C6 O7 P6G sing 266 n n C6 H61 P6G sing 267 n n C6 H62 P6G sing 268 n n O7 C8 P6G sing 269 n n C8 C9 P6G sing 270 n n C8 H81 P6G sing 271 n n C8 H82 P6G sing 272 n n C9 O10 P6G sing 273 n n C9 H91 P6G sing 274 n n C9 H92 P6G sing 275 n n O10 C11 P6G sing 276 n n C11 C12 P6G sing 277 n n C11 H111 P6G sing 278 n n C11 H112 P6G sing 279 n n C12 O13 P6G sing 280 n n C12 H121 P6G sing 281 n n C12 H122 P6G sing 282 n n O13 C14 P6G sing 283 n n C14 C15 P6G sing 284 n n C14 H141 P6G sing 285 n n C14 H142 P6G sing 286 n n C15 O16 P6G sing 287 n n C15 H151 P6G sing 288 n n C15 H152 P6G sing 289 n n O16 C17 P6G sing 290 n n C17 C18 P6G sing 291 n n C17 H171 P6G sing 292 n n C17 H172 P6G sing 293 n n C18 O19 P6G sing 294 n n C18 H181 P6G sing 295 n n C18 H182 P6G sing 296 n n O19 H19 P6G sing 297 n n # _atom_sites.entry_id 4JK6 _atom_sites.fract_transf_matrix[1][1] 0.00825 _atom_sites.fract_transf_matrix[1][2] 0.004763 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 301 1 SO4 SO4 . D 3 SO4 A 1 302 2 SO4 SO4 . E 3 SO4 A 1 303 3 SO4 SO4 . F 3 SO4 A 1 304 4 SO4 SO4 . G 4 CL A 1 305 5 CL CL . H 5 P6G A 1 306 6 P6G P6G . I 6 ZBR B 1 101 19 ZBR LIG . J 7 HOH A 1 401 1 HOH HOH . J 7 HOH A 2 402 2 HOH HOH . J 7 HOH A 3 403 3 HOH HOH . J 7 HOH A 4 404 4 HOH HOH . J 7 HOH A 5 405 5 HOH HOH . J 7 HOH A 6 406 6 HOH HOH . J 7 HOH A 7 407 7 HOH HOH . J 7 HOH A 8 408 8 HOH HOH . J 7 HOH A 9 409 9 HOH HOH . J 7 HOH A 10 410 10 HOH HOH . J 7 HOH A 11 411 11 HOH HOH . J 7 HOH A 12 412 12 HOH HOH . J 7 HOH A 13 413 13 HOH HOH . J 7 HOH A 14 414 14 HOH HOH . J 7 HOH A 15 415 15 HOH HOH . J 7 HOH A 16 416 16 HOH HOH . J 7 HOH A 17 417 17 HOH HOH . J 7 HOH A 18 418 18 HOH HOH . J 7 HOH A 19 419 19 HOH HOH . J 7 HOH A 20 420 20 HOH HOH . J 7 HOH A 21 421 21 HOH HOH . J 7 HOH A 22 422 23 HOH HOH . J 7 HOH A 23 423 24 HOH HOH . J 7 HOH A 24 424 25 HOH HOH . J 7 HOH A 25 425 26 HOH HOH . J 7 HOH A 26 426 27 HOH HOH . J 7 HOH A 27 427 28 HOH HOH . J 7 HOH A 28 428 29 HOH HOH . J 7 HOH A 29 429 30 HOH HOH . J 7 HOH A 30 430 31 HOH HOH . J 7 HOH A 31 431 32 HOH HOH . J 7 HOH A 32 432 34 HOH HOH . J 7 HOH A 33 433 35 HOH HOH . J 7 HOH A 34 434 36 HOH HOH . J 7 HOH A 35 435 37 HOH HOH . J 7 HOH A 36 436 38 HOH HOH . J 7 HOH A 37 437 39 HOH HOH . J 7 HOH A 38 438 40 HOH HOH . J 7 HOH A 39 439 41 HOH HOH . J 7 HOH A 40 440 42 HOH HOH . J 7 HOH A 41 441 43 HOH HOH . J 7 HOH A 42 442 44 HOH HOH . J 7 HOH A 43 443 45 HOH HOH . J 7 HOH A 44 444 46 HOH HOH . J 7 HOH A 45 445 47 HOH HOH . J 7 HOH A 46 446 48 HOH HOH . J 7 HOH A 47 447 49 HOH HOH . J 7 HOH A 48 448 50 HOH HOH . J 7 HOH A 49 449 51 HOH HOH . J 7 HOH A 50 450 52 HOH HOH . J 7 HOH A 51 451 53 HOH HOH . J 7 HOH A 52 452 55 HOH HOH . J 7 HOH A 53 453 56 HOH HOH . J 7 HOH A 54 454 57 HOH HOH . J 7 HOH A 55 455 58 HOH HOH . J 7 HOH A 56 456 59 HOH HOH . J 7 HOH A 57 457 60 HOH HOH . J 7 HOH A 58 458 61 HOH HOH . J 7 HOH A 59 459 62 HOH HOH . J 7 HOH A 60 460 63 HOH HOH . J 7 HOH A 61 461 64 HOH HOH . J 7 HOH A 62 462 65 HOH HOH . J 7 HOH A 63 463 66 HOH HOH . J 7 HOH A 64 464 67 HOH HOH . J 7 HOH A 65 465 68 HOH HOH . J 7 HOH A 66 466 69 HOH HOH . J 7 HOH A 67 467 70 HOH HOH . J 7 HOH A 68 468 71 HOH HOH . J 7 HOH A 69 469 72 HOH HOH . J 7 HOH A 70 470 73 HOH HOH . J 7 HOH A 71 471 74 HOH HOH . J 7 HOH A 72 472 75 HOH HOH . J 7 HOH A 73 473 76 HOH HOH . J 7 HOH A 74 474 77 HOH HOH . J 7 HOH A 75 475 78 HOH HOH . J 7 HOH A 76 476 79 HOH HOH . J 7 HOH A 77 477 80 HOH HOH . J 7 HOH A 78 478 81 HOH HOH . J 7 HOH A 79 479 82 HOH HOH . J 7 HOH A 80 480 83 HOH HOH . J 7 HOH A 81 481 84 HOH HOH . J 7 HOH A 82 482 85 HOH HOH . J 7 HOH A 83 483 86 HOH HOH . J 7 HOH A 84 484 87 HOH HOH . J 7 HOH A 85 485 88 HOH HOH . J 7 HOH A 86 486 89 HOH HOH . J 7 HOH A 87 487 90 HOH HOH . J 7 HOH A 88 488 91 HOH HOH . J 7 HOH A 89 489 92 HOH HOH . J 7 HOH A 90 490 93 HOH HOH . J 7 HOH A 91 491 94 HOH HOH . J 7 HOH A 92 492 95 HOH HOH . J 7 HOH A 93 493 96 HOH HOH . J 7 HOH A 94 494 97 HOH HOH . J 7 HOH A 95 495 98 HOH HOH . J 7 HOH A 96 496 99 HOH HOH . J 7 HOH A 97 497 100 HOH HOH . J 7 HOH A 98 498 101 HOH HOH . J 7 HOH A 99 499 102 HOH HOH . J 7 HOH A 100 500 103 HOH HOH . J 7 HOH A 101 501 105 HOH HOH . J 7 HOH A 102 502 106 HOH HOH . J 7 HOH A 103 503 107 HOH HOH . J 7 HOH A 104 504 109 HOH HOH . J 7 HOH A 105 505 110 HOH HOH . K 7 HOH B 1 201 22 HOH HOH . K 7 HOH B 2 202 33 HOH HOH . K 7 HOH B 3 203 54 HOH HOH . K 7 HOH B 4 204 104 HOH HOH . K 7 HOH B 5 205 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . H 5 -41.542 103.871 -17.371 1 77.25 ? O1 P6G 306 A 1 HETATM 2 C C2 P6G . . . H 5 -41.401 105.189 -17.928 1 80.24 ? C2 P6G 306 A 1 HETATM 3 C C3 P6G . . . H 5 -39.921 105.577 -17.922 1 83.15 ? C3 P6G 306 A 1 HETATM 4 O O4 P6G . . . H 5 -39.29 104.998 -19.074 1 83.52 ? O4 P6G 306 A 1 HETATM 5 C C5 P6G . . . H 5 -37.915 104.635 -18.924 1 73.99 ? C5 P6G 306 A 1 HETATM 6 C C6 P6G . . . H 5 -37.777 103.227 -18.355 1 68.64 ? C6 P6G 306 A 1 HETATM 7 O O7 P6G . . . H 5 -37.478 103.344 -16.974 1 64.76 ? O7 P6G 306 A 1 HETATM 8 C C8 P6G . . . H 5 -37.397 102.11 -16.253 1 63.85 ? C8 P6G 306 A 1 HETATM 9 C C9 P6G . . . H 5 -36.68 102.367 -14.918 1 60.64 ? C9 P6G 306 A 1 HETATM 10 O O10 P6G . . . H 5 -37.453 102.006 -13.759 1 51.65 ? O10 P6G 306 A 1 HETATM 11 C C11 P6G . . . H 5 -37.157 102.81 -12.618 1 46.94 ? C11 P6G 306 A 1 HETATM 12 C C12 P6G . . . H 5 -38.353 102.905 -11.686 1 48.47 ? C12 P6G 306 A 1 HETATM 13 O O13 P6G . . . H 5 -39.372 103.669 -12.291 1 49.09 ? O13 P6G 306 A 1 HETATM 14 C C14 P6G . . . H 5 -40.578 103.751 -11.506 1 49.96 ? C14 P6G 306 A 1 HETATM 15 C C15 P6G . . . H 5 -41.498 104.766 -12.179 1 55.1 ? C15 P6G 306 A 1 HETATM 16 O O16 P6G . . . H 5 -42.584 104.166 -12.911 1 61.79 ? O16 P6G 306 A 1 HETATM 17 C C17 P6G . . . H 5 -42.847 104.722 -14.216 1 64.69 ? C17 P6G 306 A 1 HETATM 18 C C18 P6G . . . H 5 -44.222 105.382 -14.215 1 66.54 ? C18 P6G 306 A 1 HETATM 19 O O19 P6G . . . H 5 -45.252 104.396 -14.413 1 68.04 ? O19 P6G 306 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #