data_4JKI # _model_server_result.job_id TrNpg2y5AaQaKeNWiPuZbw _model_server_result.datetime_utc '2024-10-15 10:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4JKI # _exptl.entry_id 4JKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.288 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,7-dimethyl-6-[(prop-1-yn-1-ylamino)methyl]quinazolin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JKI _cell.length_a 162.373 _cell.length_b 162.373 _cell.length_c 258.074 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 81.1865 46.873048 86.024667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H15 N3 O' _chem_comp.formula_weight 241.288 _chem_comp.id ZD9 _chem_comp.mon_nstd_flag . _chem_comp.name 2,7-dimethyl-6-[(prop-1-yn-1-ylamino)methyl]quinazolin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7 C1 ZD9 doub 433 n n C6 C1 ZD9 sing 434 n n C1 N2 ZD9 sing 435 n n N2 C3 ZD9 sing 436 n n N2 HN2 ZD9 sing 437 n n C3 N4 ZD9 doub 438 n n C3 C39 ZD9 sing 439 n n C5 N4 ZD9 sing 440 n n C6 C5 ZD9 doub 441 n y C5 C11 ZD9 sing 442 n y C8 C6 ZD9 sing 443 n y C8 C9 ZD9 doub 444 n y C8 H8 ZD9 sing 445 n n C12 C9 ZD9 sing 446 n n C9 C10 ZD9 sing 447 n y C10 C38 ZD9 sing 448 n n C10 C11 ZD9 doub 449 n y C11 H11 ZD9 sing 450 n n N13 C12 ZD9 sing 451 n n C12 H12 ZD9 sing 452 n n C12 H12A ZD9 sing 453 n n C14 N13 ZD9 sing 454 n n N13 HN13 ZD9 sing 455 n n C15 C14 ZD9 trip 456 n n C16 C15 ZD9 sing 457 n n C16 H16 ZD9 sing 458 n n C16 H16A ZD9 sing 459 n n C16 H16B ZD9 sing 460 n n C38 H38 ZD9 sing 461 n n C38 H38A ZD9 sing 462 n n C38 H38B ZD9 sing 463 n n C39 H39 ZD9 sing 464 n n C39 H39A ZD9 sing 465 n n C39 H39B ZD9 sing 466 n n # _atom_sites.entry_id 4JKI _atom_sites.fract_transf_matrix[1][1] 0.006159 _atom_sites.fract_transf_matrix[1][2] 0.003556 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZD9 A 1 601 601 ZD9 ZD9 . D 3 XPO A 1 602 602 XPO XPO . E 4 ADP A 1 603 603 ADP ADP . F 5 SO4 A 1 604 604 SO4 SO4 . G 5 SO4 A 1 605 605 SO4 SO4 . H 5 SO4 B 1 601 601 SO4 SO4 . I 5 SO4 B 1 602 602 SO4 SO4 . J 6 HOH A 1 701 702 HOH HOH . J 6 HOH A 2 702 703 HOH HOH . J 6 HOH A 3 703 704 HOH HOH . J 6 HOH A 4 704 705 HOH HOH . J 6 HOH A 5 705 706 HOH HOH . J 6 HOH A 6 706 707 HOH HOH . J 6 HOH A 7 707 708 HOH HOH . J 6 HOH A 8 708 709 HOH HOH . J 6 HOH A 9 709 710 HOH HOH . J 6 HOH A 10 710 711 HOH HOH . J 6 HOH A 11 711 712 HOH HOH . J 6 HOH A 12 712 713 HOH HOH . J 6 HOH A 13 713 714 HOH HOH . J 6 HOH A 14 714 715 HOH HOH . J 6 HOH A 15 715 716 HOH HOH . J 6 HOH A 16 716 717 HOH HOH . J 6 HOH A 17 717 718 HOH HOH . J 6 HOH A 18 718 719 HOH HOH . J 6 HOH A 19 719 720 HOH HOH . J 6 HOH A 20 720 721 HOH HOH . J 6 HOH A 21 721 722 HOH HOH . J 6 HOH A 22 722 723 HOH HOH . J 6 HOH A 23 723 724 HOH HOH . J 6 HOH A 24 724 725 HOH HOH . J 6 HOH A 25 725 726 HOH HOH . J 6 HOH A 26 726 727 HOH HOH . J 6 HOH A 27 727 728 HOH HOH . J 6 HOH A 28 728 729 HOH HOH . J 6 HOH A 29 729 730 HOH HOH . J 6 HOH A 30 730 731 HOH HOH . J 6 HOH A 31 731 732 HOH HOH . J 6 HOH A 32 732 733 HOH HOH . J 6 HOH A 33 733 734 HOH HOH . J 6 HOH A 34 734 735 HOH HOH . J 6 HOH A 35 735 736 HOH HOH . J 6 HOH A 36 736 737 HOH HOH . J 6 HOH A 37 737 738 HOH HOH . J 6 HOH A 38 738 739 HOH HOH . J 6 HOH A 39 739 740 HOH HOH . J 6 HOH A 40 740 741 HOH HOH . J 6 HOH A 41 741 742 HOH HOH . J 6 HOH A 42 742 743 HOH HOH . J 6 HOH A 43 743 744 HOH HOH . J 6 HOH A 44 744 745 HOH HOH . J 6 HOH A 45 745 746 HOH HOH . J 6 HOH A 46 746 747 HOH HOH . J 6 HOH A 47 747 748 HOH HOH . J 6 HOH A 48 748 749 HOH HOH . J 6 HOH A 49 749 750 HOH HOH . J 6 HOH A 50 750 751 HOH HOH . J 6 HOH A 51 751 752 HOH HOH . J 6 HOH A 52 752 753 HOH HOH . J 6 HOH A 53 753 754 HOH HOH . J 6 HOH A 54 754 755 HOH HOH . J 6 HOH A 55 755 756 HOH HOH . J 6 HOH A 56 756 757 HOH HOH . J 6 HOH A 57 757 758 HOH HOH . J 6 HOH A 58 758 759 HOH HOH . K 6 HOH B 1 701 701 HOH HOH . K 6 HOH B 2 702 702 HOH HOH . K 6 HOH B 3 703 703 HOH HOH . K 6 HOH B 4 704 704 HOH HOH . K 6 HOH B 5 705 705 HOH HOH . K 6 HOH B 6 706 706 HOH HOH . K 6 HOH B 7 707 707 HOH HOH . K 6 HOH B 8 708 708 HOH HOH . K 6 HOH B 9 709 709 HOH HOH . K 6 HOH B 10 710 710 HOH HOH . K 6 HOH B 11 711 711 HOH HOH . K 6 HOH B 12 712 712 HOH HOH . K 6 HOH B 13 713 713 HOH HOH . K 6 HOH B 14 714 714 HOH HOH . K 6 HOH B 15 715 715 HOH HOH . K 6 HOH B 16 716 716 HOH HOH . K 6 HOH B 17 717 717 HOH HOH . K 6 HOH B 18 718 718 HOH HOH . K 6 HOH B 19 719 719 HOH HOH . K 6 HOH B 20 720 720 HOH HOH . K 6 HOH B 21 721 721 HOH HOH . K 6 HOH B 22 722 722 HOH HOH . K 6 HOH B 23 723 723 HOH HOH . K 6 HOH B 24 724 724 HOH HOH . K 6 HOH B 25 725 725 HOH HOH . K 6 HOH B 26 726 726 HOH HOH . K 6 HOH B 27 727 727 HOH HOH . K 6 HOH B 28 728 728 HOH HOH . K 6 HOH B 29 729 729 HOH HOH . K 6 HOH B 30 730 730 HOH HOH . K 6 HOH B 31 731 731 HOH HOH . K 6 HOH B 32 732 732 HOH HOH . K 6 HOH B 33 733 733 HOH HOH . K 6 HOH B 34 734 734 HOH HOH . K 6 HOH B 35 735 735 HOH HOH . K 6 HOH B 36 736 736 HOH HOH . K 6 HOH B 37 737 737 HOH HOH . K 6 HOH B 38 738 738 HOH HOH . K 6 HOH B 39 739 739 HOH HOH . K 6 HOH B 40 740 740 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZD9 . . . C 2 8.271 12.116 69.653 0.5 77.23 ? C1 ZD9 601 A 1 HETATM 2 N N2 ZD9 . . . C 2 7.995 11.449 70.85 0.5 77.93 ? N2 ZD9 601 A 1 HETATM 3 C C3 ZD9 . . . C 2 7.143 12.052 71.786 0.5 77.99 ? C3 ZD9 601 A 1 HETATM 4 N N4 ZD9 . . . C 2 6.606 13.244 71.559 0.5 74.66 ? N4 ZD9 601 A 1 HETATM 5 C C5 ZD9 . . . C 2 6.859 13.892 70.421 0.5 79.97 ? C5 ZD9 601 A 1 HETATM 6 C C6 ZD9 . . . C 2 7.693 13.359 69.436 0.5 76.87 ? C6 ZD9 601 A 1 HETATM 7 O O7 ZD9 . . . C 2 9.011 11.6 68.815 0.5 79.18 ? O7 ZD9 601 A 1 HETATM 8 C C8 ZD9 . . . C 2 7.933 14.071 68.252 0.5 76.83 ? C8 ZD9 601 A 1 HETATM 9 C C9 ZD9 . . . C 2 7.332 15.324 68.088 0.5 76.7 ? C9 ZD9 601 A 1 HETATM 10 C C10 ZD9 . . . C 2 6.506 15.827 69.07 0.5 79.82 ? C10 ZD9 601 A 1 HETATM 11 C C11 ZD9 . . . C 2 6.263 15.13 70.24 0.5 82.7 ? C11 ZD9 601 A 1 HETATM 12 C C12 ZD9 . . . C 2 7.416 16.16 67.007 0.5 75.39 ? C12 ZD9 601 A 1 HETATM 13 N N13 ZD9 . . . C 2 7.263 15.413 65.745 0.5 74.12 ? N13 ZD9 601 A 1 HETATM 14 C C14 ZD9 . . . C 2 7.207 16.313 64.629 0.5 67.65 ? C14 ZD9 601 A 1 HETATM 15 C C15 ZD9 . . . C 2 7.279 17.135 63.729 0.5 62.94 ? C15 ZD9 601 A 1 HETATM 16 C C16 ZD9 . . . C 2 7.437 18.011 62.537 0.5 59.56 ? C16 ZD9 601 A 1 HETATM 17 C C38 ZD9 . . . C 2 5.946 17.065 68.85 0.5 77.65 ? C38 ZD9 601 A 1 HETATM 18 C C39 ZD9 . . . C 2 6.848 11.43 72.974 0.5 75.56 ? C39 ZD9 601 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #