data_4JKI
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_model_server_result.job_id            BfPuZHP5gA_gKQUMpYbxoA 
_model_server_result.datetime_utc      '2024-10-15 10:29:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jki 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
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_entry.id    4JKI 
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_exptl.entry_id    4JKI 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              126.005 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'formyl phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4JKI 
_cell.length_a            162.373 
_cell.length_b            162.373 
_cell.length_c            258.074 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4JKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
A,B,C,D,E,F,G,H,I,J,K 2 1,2 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 81.1865 46.873048 86.024667 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
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_chem_comp.formula           'C H3 O5 P' 
_chem_comp.formula_weight    126.005 
_chem_comp.id                XPO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'formyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C XPO doub 424 n n 
C O2 XPO sing 425 n n 
O3 P XPO doub 426 n n 
O2 P XPO sing 427 n n 
P O1 XPO sing 428 n n 
P O4 XPO sing 429 n n 
C H1 XPO sing 430 n n 
O1 H2 XPO sing 431 n n 
O4 H3 XPO sing 432 n n 
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_atom_sites.entry_id                     4JKI 
_atom_sites.fract_transf_matrix[1][1]    0.006159 
_atom_sites.fract_transf_matrix[1][2]    0.003556 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZD9 A 1 601 601 ZD9 ZD9 . 
D 3 XPO A 1 602 602 XPO XPO . 
E 4 ADP A 1 603 603 ADP ADP . 
F 5 SO4 A 1 604 604 SO4 SO4 . 
G 5 SO4 A 1 605 605 SO4 SO4 . 
H 5 SO4 B 1 601 601 SO4 SO4 . 
I 5 SO4 B 1 602 602 SO4 SO4 . 
J 6 HOH A 1 701 702 HOH HOH . 
J 6 HOH A 2 702 703 HOH HOH . 
J 6 HOH A 3 703 704 HOH HOH . 
J 6 HOH A 4 704 705 HOH HOH . 
J 6 HOH A 5 705 706 HOH HOH . 
J 6 HOH A 6 706 707 HOH HOH . 
J 6 HOH A 7 707 708 HOH HOH . 
J 6 HOH A 8 708 709 HOH HOH . 
J 6 HOH A 9 709 710 HOH HOH . 
J 6 HOH A 10 710 711 HOH HOH . 
J 6 HOH A 11 711 712 HOH HOH . 
J 6 HOH A 12 712 713 HOH HOH . 
J 6 HOH A 13 713 714 HOH HOH . 
J 6 HOH A 14 714 715 HOH HOH . 
J 6 HOH A 15 715 716 HOH HOH . 
J 6 HOH A 16 716 717 HOH HOH . 
J 6 HOH A 17 717 718 HOH HOH . 
J 6 HOH A 18 718 719 HOH HOH . 
J 6 HOH A 19 719 720 HOH HOH . 
J 6 HOH A 20 720 721 HOH HOH . 
J 6 HOH A 21 721 722 HOH HOH . 
J 6 HOH A 22 722 723 HOH HOH . 
J 6 HOH A 23 723 724 HOH HOH . 
J 6 HOH A 24 724 725 HOH HOH . 
J 6 HOH A 25 725 726 HOH HOH . 
J 6 HOH A 26 726 727 HOH HOH . 
J 6 HOH A 27 727 728 HOH HOH . 
J 6 HOH A 28 728 729 HOH HOH . 
J 6 HOH A 29 729 730 HOH HOH . 
J 6 HOH A 30 730 731 HOH HOH . 
J 6 HOH A 31 731 732 HOH HOH . 
J 6 HOH A 32 732 733 HOH HOH . 
J 6 HOH A 33 733 734 HOH HOH . 
J 6 HOH A 34 734 735 HOH HOH . 
J 6 HOH A 35 735 736 HOH HOH . 
J 6 HOH A 36 736 737 HOH HOH . 
J 6 HOH A 37 737 738 HOH HOH . 
J 6 HOH A 38 738 739 HOH HOH . 
J 6 HOH A 39 739 740 HOH HOH . 
J 6 HOH A 40 740 741 HOH HOH . 
J 6 HOH A 41 741 742 HOH HOH . 
J 6 HOH A 42 742 743 HOH HOH . 
J 6 HOH A 43 743 744 HOH HOH . 
J 6 HOH A 44 744 745 HOH HOH . 
J 6 HOH A 45 745 746 HOH HOH . 
J 6 HOH A 46 746 747 HOH HOH . 
J 6 HOH A 47 747 748 HOH HOH . 
J 6 HOH A 48 748 749 HOH HOH . 
J 6 HOH A 49 749 750 HOH HOH . 
J 6 HOH A 50 750 751 HOH HOH . 
J 6 HOH A 51 751 752 HOH HOH . 
J 6 HOH A 52 752 753 HOH HOH . 
J 6 HOH A 53 753 754 HOH HOH . 
J 6 HOH A 54 754 755 HOH HOH . 
J 6 HOH A 55 755 756 HOH HOH . 
J 6 HOH A 56 756 757 HOH HOH . 
J 6 HOH A 57 757 758 HOH HOH . 
J 6 HOH A 58 758 759 HOH HOH . 
K 6 HOH B 1 701 701 HOH HOH . 
K 6 HOH B 2 702 702 HOH HOH . 
K 6 HOH B 3 703 703 HOH HOH . 
K 6 HOH B 4 704 704 HOH HOH . 
K 6 HOH B 5 705 705 HOH HOH . 
K 6 HOH B 6 706 706 HOH HOH . 
K 6 HOH B 7 707 707 HOH HOH . 
K 6 HOH B 8 708 708 HOH HOH . 
K 6 HOH B 9 709 709 HOH HOH . 
K 6 HOH B 10 710 710 HOH HOH . 
K 6 HOH B 11 711 711 HOH HOH . 
K 6 HOH B 12 712 712 HOH HOH . 
K 6 HOH B 13 713 713 HOH HOH . 
K 6 HOH B 14 714 714 HOH HOH . 
K 6 HOH B 15 715 715 HOH HOH . 
K 6 HOH B 16 716 716 HOH HOH . 
K 6 HOH B 17 717 717 HOH HOH . 
K 6 HOH B 18 718 718 HOH HOH . 
K 6 HOH B 19 719 719 HOH HOH . 
K 6 HOH B 20 720 720 HOH HOH . 
K 6 HOH B 21 721 721 HOH HOH . 
K 6 HOH B 22 722 722 HOH HOH . 
K 6 HOH B 23 723 723 HOH HOH . 
K 6 HOH B 24 724 724 HOH HOH . 
K 6 HOH B 25 725 725 HOH HOH . 
K 6 HOH B 26 726 726 HOH HOH . 
K 6 HOH B 27 727 727 HOH HOH . 
K 6 HOH B 28 728 728 HOH HOH . 
K 6 HOH B 29 729 729 HOH HOH . 
K 6 HOH B 30 730 730 HOH HOH . 
K 6 HOH B 31 731 731 HOH HOH . 
K 6 HOH B 32 732 732 HOH HOH . 
K 6 HOH B 33 733 733 HOH HOH . 
K 6 HOH B 34 734 734 HOH HOH . 
K 6 HOH B 35 735 735 HOH HOH . 
K 6 HOH B 36 736 736 HOH HOH . 
K 6 HOH B 37 737 737 HOH HOH . 
K 6 HOH B 38 738 738 HOH HOH . 
K 6 HOH B 39 739 739 HOH HOH . 
K 6 HOH B 40 740 740 HOH HOH . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C XPO . . . D 3 6.004 20.758 67.725 0.5 97.47 ? C XPO 602 A 1 
HETATM 2 O O XPO . . . D 3 5.182 19.85 67.822 0.5 80.41 ? O XPO 602 A 1 
HETATM 3 P P XPO . . . D 3 6.634 23.15 68.496 0.5 117.38 ? P XPO 602 A 1 
HETATM 4 O O1 XPO . . . D 3 5.32 23.751 68.149 0.5 104.56 ? O1 XPO 602 A 1 
HETATM 5 O O2 XPO . . . D 3 6.207 21.621 68.762 0.5 106.78 ? O2 XPO 602 A 1 
HETATM 6 O O3 XPO . . . D 3 7.595 23.151 67.379 0.5 109.25 ? O3 XPO 602 A 1 
HETATM 7 O O4 XPO . . . D 3 7.178 23.527 69.814 0.5 112.49 ? O4 XPO 602 A 1 
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_model_server_stats.io_time_ms              129 
_model_server_stats.parse_time_ms           98 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           7 
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