data_4JKI
#
_model_server_result.job_id            flxIOrcSbhPQ-u6inleq8Q 
_model_server_result.datetime_utc      '2024-11-22 21:50:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":603}' 
#
_entry.id    4JKI 
#
_exptl.entry_id    4JKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4JKI 
_cell.length_a            162.373 
_cell.length_b            162.373 
_cell.length_c            258.074 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
A,B,C,D,E,F,G,H,I,J,K 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 81.1865 46.873048 86.024667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4JKI 
_atom_sites.fract_transf_matrix[1][1]    0.006159 
_atom_sites.fract_transf_matrix[1][2]    0.003556 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZD9 A 1 601 601 ZD9 ZD9 . 
D 3 XPO A 1 602 602 XPO XPO . 
E 4 ADP A 1 603 603 ADP ADP . 
F 5 SO4 A 1 604 604 SO4 SO4 . 
G 5 SO4 A 1 605 605 SO4 SO4 . 
H 5 SO4 B 1 601 601 SO4 SO4 . 
I 5 SO4 B 1 602 602 SO4 SO4 . 
J 6 HOH A 1 701 702 HOH HOH . 
J 6 HOH A 2 702 703 HOH HOH . 
J 6 HOH A 3 703 704 HOH HOH . 
J 6 HOH A 4 704 705 HOH HOH . 
J 6 HOH A 5 705 706 HOH HOH . 
J 6 HOH A 6 706 707 HOH HOH . 
J 6 HOH A 7 707 708 HOH HOH . 
J 6 HOH A 8 708 709 HOH HOH . 
J 6 HOH A 9 709 710 HOH HOH . 
J 6 HOH A 10 710 711 HOH HOH . 
J 6 HOH A 11 711 712 HOH HOH . 
J 6 HOH A 12 712 713 HOH HOH . 
J 6 HOH A 13 713 714 HOH HOH . 
J 6 HOH A 14 714 715 HOH HOH . 
J 6 HOH A 15 715 716 HOH HOH . 
J 6 HOH A 16 716 717 HOH HOH . 
J 6 HOH A 17 717 718 HOH HOH . 
J 6 HOH A 18 718 719 HOH HOH . 
J 6 HOH A 19 719 720 HOH HOH . 
J 6 HOH A 20 720 721 HOH HOH . 
J 6 HOH A 21 721 722 HOH HOH . 
J 6 HOH A 22 722 723 HOH HOH . 
J 6 HOH A 23 723 724 HOH HOH . 
J 6 HOH A 24 724 725 HOH HOH . 
J 6 HOH A 25 725 726 HOH HOH . 
J 6 HOH A 26 726 727 HOH HOH . 
J 6 HOH A 27 727 728 HOH HOH . 
J 6 HOH A 28 728 729 HOH HOH . 
J 6 HOH A 29 729 730 HOH HOH . 
J 6 HOH A 30 730 731 HOH HOH . 
J 6 HOH A 31 731 732 HOH HOH . 
J 6 HOH A 32 732 733 HOH HOH . 
J 6 HOH A 33 733 734 HOH HOH . 
J 6 HOH A 34 734 735 HOH HOH . 
J 6 HOH A 35 735 736 HOH HOH . 
J 6 HOH A 36 736 737 HOH HOH . 
J 6 HOH A 37 737 738 HOH HOH . 
J 6 HOH A 38 738 739 HOH HOH . 
J 6 HOH A 39 739 740 HOH HOH . 
J 6 HOH A 40 740 741 HOH HOH . 
J 6 HOH A 41 741 742 HOH HOH . 
J 6 HOH A 42 742 743 HOH HOH . 
J 6 HOH A 43 743 744 HOH HOH . 
J 6 HOH A 44 744 745 HOH HOH . 
J 6 HOH A 45 745 746 HOH HOH . 
J 6 HOH A 46 746 747 HOH HOH . 
J 6 HOH A 47 747 748 HOH HOH . 
J 6 HOH A 48 748 749 HOH HOH . 
J 6 HOH A 49 749 750 HOH HOH . 
J 6 HOH A 50 750 751 HOH HOH . 
J 6 HOH A 51 751 752 HOH HOH . 
J 6 HOH A 52 752 753 HOH HOH . 
J 6 HOH A 53 753 754 HOH HOH . 
J 6 HOH A 54 754 755 HOH HOH . 
J 6 HOH A 55 755 756 HOH HOH . 
J 6 HOH A 56 756 757 HOH HOH . 
J 6 HOH A 57 757 758 HOH HOH . 
J 6 HOH A 58 758 759 HOH HOH . 
K 6 HOH B 1 701 701 HOH HOH . 
K 6 HOH B 2 702 702 HOH HOH . 
K 6 HOH B 3 703 703 HOH HOH . 
K 6 HOH B 4 704 704 HOH HOH . 
K 6 HOH B 5 705 705 HOH HOH . 
K 6 HOH B 6 706 706 HOH HOH . 
K 6 HOH B 7 707 707 HOH HOH . 
K 6 HOH B 8 708 708 HOH HOH . 
K 6 HOH B 9 709 709 HOH HOH . 
K 6 HOH B 10 710 710 HOH HOH . 
K 6 HOH B 11 711 711 HOH HOH . 
K 6 HOH B 12 712 712 HOH HOH . 
K 6 HOH B 13 713 713 HOH HOH . 
K 6 HOH B 14 714 714 HOH HOH . 
K 6 HOH B 15 715 715 HOH HOH . 
K 6 HOH B 16 716 716 HOH HOH . 
K 6 HOH B 17 717 717 HOH HOH . 
K 6 HOH B 18 718 718 HOH HOH . 
K 6 HOH B 19 719 719 HOH HOH . 
K 6 HOH B 20 720 720 HOH HOH . 
K 6 HOH B 21 721 721 HOH HOH . 
K 6 HOH B 22 722 722 HOH HOH . 
K 6 HOH B 23 723 723 HOH HOH . 
K 6 HOH B 24 724 724 HOH HOH . 
K 6 HOH B 25 725 725 HOH HOH . 
K 6 HOH B 26 726 726 HOH HOH . 
K 6 HOH B 27 727 727 HOH HOH . 
K 6 HOH B 28 728 728 HOH HOH . 
K 6 HOH B 29 729 729 HOH HOH . 
K 6 HOH B 30 730 730 HOH HOH . 
K 6 HOH B 31 731 731 HOH HOH . 
K 6 HOH B 32 732 732 HOH HOH . 
K 6 HOH B 33 733 733 HOH HOH . 
K 6 HOH B 34 734 734 HOH HOH . 
K 6 HOH B 35 735 735 HOH HOH . 
K 6 HOH B 36 736 736 HOH HOH . 
K 6 HOH B 37 737 737 HOH HOH . 
K 6 HOH B 38 738 738 HOH HOH . 
K 6 HOH B 39 739 739 HOH HOH . 
K 6 HOH B 40 740 740 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . E 4 7.196 22.59 68.684 0.5 87.48 ? PB ADP 603 A 1 
HETATM 2 O O1B ADP . . . E 4 7.205 22.75 70.191 0.5 75.33 ? O1B ADP 603 A 1 
HETATM 3 O O2B ADP . . . E 4 8.312 23.338 67.973 0.5 75.84 ? O2B ADP 603 A 1 
HETATM 4 O O3B ADP . . . E 4 5.851 22.781 67.993 0.5 82.41 ? O3B ADP 603 A 1 
HETATM 5 P PA ADP . . . E 4 6.782 19.784 67.852 0.5 65.57 ? PA ADP 603 A 1 
HETATM 6 O O1A ADP . . . E 4 5.285 19.908 67.969 0.5 57.8 ? O1A ADP 603 A 1 
HETATM 7 O O2A ADP . . . E 4 7.414 19.443 66.523 0.5 65.27 ? O2A ADP 603 A 1 
HETATM 8 O O3A ADP . . . E 4 7.579 21.015 68.569 0.5 76.29 ? O3A ADP 603 A 1 
HETATM 9 O O5' ADP . . . E 4 7.38 18.68 68.846 0.5 68.57 ? O5' ADP 603 A 1 
HETATM 10 C C5' ADP . . . E 4 8.808 18.575 68.931 0.5 62.08 ? C5' ADP 603 A 1 
HETATM 11 C C4' ADP . . . E 4 9.19 17.641 67.807 0.5 60.68 ? C4' ADP 603 A 1 
HETATM 12 O O4' ADP . . . E 4 9.385 16.348 68.391 0.5 61.46 ? O4' ADP 603 A 1 
HETATM 13 C C3' ADP . . . E 4 8.03 17.557 66.811 0.5 57.23 ? C3' ADP 603 A 1 
HETATM 14 O O3' ADP . . . E 4 8.433 17.518 65.431 0.5 52.44 ? O3' ADP 603 A 1 
HETATM 15 C C2' ADP . . . E 4 7.303 16.282 67.193 0.5 57.27 ? C2' ADP 603 A 1 
HETATM 16 O O2' ADP . . . E 4 6.915 15.561 66.016 0.5 59.46 ? O2' ADP 603 A 1 
HETATM 17 C C1' ADP . . . E 4 8.275 15.5 68.077 0.5 57.01 ? C1' ADP 603 A 1 
HETATM 18 N N9 ADP . . . E 4 7.629 15.077 69.337 0.5 55.35 ? N9 ADP 603 A 1 
HETATM 19 C C8 ADP . . . E 4 6.854 15.84 70.149 0.5 56.5 ? C8 ADP 603 A 1 
HETATM 20 N N7 ADP . . . E 4 6.412 15.119 71.221 0.5 53.63 ? N7 ADP 603 A 1 
HETATM 21 C C5 ADP . . . E 4 6.923 13.872 71.095 0.5 50.85 ? C5 ADP 603 A 1 
HETATM 22 C C6 ADP . . . E 4 6.867 12.62 71.857 0.5 46.61 ? C6 ADP 603 A 1 
HETATM 23 N N6 ADP . . . E 4 6.174 12.534 73.01 0.5 40.88 ? N6 ADP 603 A 1 
HETATM 24 N N1 ADP . . . E 4 7.544 11.558 71.358 0.5 50.58 ? N1 ADP 603 A 1 
HETATM 25 C C2 ADP . . . E 4 8.253 11.61 70.223 0.5 48.04 ? C2 ADP 603 A 1 
HETATM 26 N N3 ADP . . . E 4 8.338 12.72 69.482 0.5 47.78 ? N3 ADP 603 A 1 
HETATM 27 C C4 ADP . . . E 4 7.717 13.852 69.857 0.5 51.71 ? C4 ADP 603 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#