data_4JKR # _model_server_result.job_id dww-qvIuKrV5CO8pQPZu4Q _model_server_result.datetime_utc '2024-12-21 17:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":1503}' # _entry.id 4JKR # _exptl.entry_id 4JKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.62 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STRONTIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JKR _cell.length_a 187.575 _cell.length_b 206.164 _cell.length_c 311.062 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U 1 1 G,H,I,J,K,L,V,W,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N ? 6 O N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O VAL 24 C VAL 24 1_555 O SR SR . C SR 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc2 D SG CYS 70 D CYS 70 1_555 Q ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 D SG CYS 72 D CYS 72 1_555 Q ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 D SG CYS 88 D CYS 88 1_555 Q ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc5 D SG CYS 814 D CYS 814 1_555 R ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc6 D SG CYS 898 D CYS 898 1_555 R ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc7 J SG CYS 70 J CYS 70 1_555 W ZN ZN . J ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 J SG CYS 72 J CYS 72 1_555 W ZN ZN . J ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc9 J OD1 ASP 460 J ASP 460 1_555 Y SR SR . J SR 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc10 J SG CYS 814 J CYS 814 1_555 X ZN ZN . J ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc11 J SG CYS 888 J CYS 888 1_555 X ZN ZN . J ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc12 J SG CYS 895 J CYS 895 1_555 X ZN ZN . J ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc13 J SG CYS 898 J CYS 898 1_555 X ZN ZN . J ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? # _chem_comp.formula 'Sr 2' _chem_comp.formula_weight 87.62 _chem_comp.id SR _chem_comp.mon_nstd_flag . _chem_comp.name 'STRONTIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4JKR _atom_sites.fract_transf_matrix[1][1] 0.005331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 6 SR A 1 401 3012 SR SR . N 6 SR C 1 1401 3004 SR SR . O 6 SR C 1 1402 3010 SR SR . P 7 G4P D 1 2001 2001 G4P G4P . Q 8 ZN D 1 2002 3001 ZN ZN . R 8 ZN D 1 2003 3002 ZN ZN . S 6 SR D 1 2004 3003 SR SR . T 6 SR E 1 101 3011 SR SR . U 6 SR F 1 701 3009 SR SR . V 6 SR I 1 1401 3008 SR SR . W 8 ZN J 1 1501 3005 ZN ZN . X 8 ZN J 1 1502 3006 ZN ZN . Y 6 SR J 1 1503 3007 SR SR . Z 7 G4P K 1 101 2002 G4P G4P . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SR _atom_site.label_atom_id SR _atom_site.label_comp_id SR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Y _atom_site.label_entity_id 6 _atom_site.Cartn_x -71.28 _atom_site.Cartn_y 130.146 _atom_site.Cartn_z 49.7 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 322.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SR _atom_site.auth_comp_id SR _atom_site.auth_seq_id 1503 _atom_site.auth_asym_id J _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 70 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #