data_4JKV # _model_server_result.job_id aTCkDGUXSsrv6-ccrCj5eQ _model_server_result.datetime_utc '2024-11-14 17:10:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":601}' # _entry.id 4JKV # _exptl.entry_id 4JKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.502 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-fluoro-N-methyl-N-{1-[4-(1-methyl-1H-pyrazol-5-yl)phthalazin-1-yl]piperidin-4-yl}-2-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.27 _cell.angle_gamma 90 _cell.entry_id 4JKV _cell.length_a 75.444 _cell.length_b 98.177 _cell.length_c 84.293 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 193 1_555 A SG CYS 133 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 137 A CYS 217 1_555 A SG CYS 215 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 234 A CYS 314 1_555 A SG CYS 310 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 410 A CYS 490 1_555 A SG CYS 427 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 113 B CYS 193 1_555 B SG CYS 133 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 137 B CYS 217 1_555 B SG CYS 215 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 B SG CYS 234 B CYS 314 1_555 B SG CYS 310 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 B SG CYS 410 B CYS 490 1_555 B SG CYS 427 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C26 H24 F4 N6 O' _chem_comp.formula_weight 512.502 _chem_comp.id 1KS _chem_comp.mon_nstd_flag . _chem_comp.name 4-fluoro-N-methyl-N-{1-[4-(1-methyl-1H-pyrazol-5-yl)phthalazin-1-yl]piperidin-4-yl}-2-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C25 1KS doub 1 n y N5 N6 1KS sing 2 n y F2 C4 1KS sing 3 n n F4 C4 1KS sing 4 n n C26 N6 1KS sing 5 n n C25 C24 1KS sing 6 n y N6 C23 1KS sing 7 n y F1 C1 1KS sing 8 n n C2 C1 1KS doub 9 n y C2 C3 1KS sing 10 n y C9 N1 1KS sing 11 n n C4 C3 1KS sing 12 n n C4 F3 1KS sing 13 n n N3 N4 1KS doub 14 n y N3 C22 1KS sing 15 n y C1 C7 1KS sing 16 n y C24 C23 1KS doub 17 n y C23 C22 1KS sing 18 n n C3 C5 1KS doub 19 n y N4 C15 1KS sing 20 n y C14 C13 1KS sing 21 n n C14 C10 1KS sing 22 n n C22 C17 1KS doub 23 n y C7 C6 1KS doub 24 n y N1 C10 1KS sing 25 n n N1 C8 1KS sing 26 n n C5 C6 1KS sing 27 n y C5 C8 1KS sing 28 n n C13 N2 1KS sing 29 n n C10 C11 1KS sing 30 n n C8 O1 1KS doub 31 n n C15 N2 1KS sing 32 n n C15 C16 1KS doub 33 n y C17 C16 1KS sing 34 n y C17 C18 1KS sing 35 n y N2 C12 1KS sing 36 n n C11 C12 1KS sing 37 n n C16 C21 1KS sing 38 n y C18 C19 1KS doub 39 n y C21 C20 1KS doub 40 n y C19 C20 1KS sing 41 n y C10 H1 1KS sing 42 n n C11 H2 1KS sing 43 n n C11 H3 1KS sing 44 n n C12 H4 1KS sing 45 n n C12 H5 1KS sing 46 n n C13 H6 1KS sing 47 n n C13 H7 1KS sing 48 n n C14 H8 1KS sing 49 n n C14 H9 1KS sing 50 n n C18 H10 1KS sing 51 n n C19 H11 1KS sing 52 n n C2 H12 1KS sing 53 n n C20 H13 1KS sing 54 n n C21 H14 1KS sing 55 n n C24 H15 1KS sing 56 n n C25 H16 1KS sing 57 n n C26 H17 1KS sing 58 n n C26 H18 1KS sing 59 n n C26 H19 1KS sing 60 n n C6 H20 1KS sing 61 n n C7 H21 1KS sing 62 n n C9 H22 1KS sing 63 n n C9 H23 1KS sing 64 n n C9 H24 1KS sing 65 n n # _atom_sites.entry_id 4JKV _atom_sites.fract_transf_matrix[1][1] 0.013255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003126 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1KS A 1 601 601 1KS 1KS . D 3 OLC A 1 602 602 OLC OLC . E 3 OLC A 1 603 603 OLC OLC . F 3 OLC A 1 604 604 OLC OLC . G 4 OLA A 1 605 605 OLA OLA . H 4 OLA A 1 606 606 OLA OLA . I 5 PEG A 1 607 607 PEG PEG . J 6 PGE A 1 608 608 PGE PGE . K 7 PG4 A 1 609 609 PG4 PG4 . L 2 1KS B 1 601 601 1KS 1KS . M 3 OLC B 1 602 602 OLC OLC . N 3 OLC B 1 603 603 OLC OLC . O 4 OLA B 1 604 604 OLA OLA . P 5 PEG B 1 605 605 PEG PEG . Q 8 HOH A 1 701 701 HOH HOH . Q 8 HOH A 2 702 702 HOH HOH . Q 8 HOH A 3 703 703 HOH HOH . Q 8 HOH A 4 704 704 HOH HOH . Q 8 HOH A 5 705 705 HOH HOH . Q 8 HOH A 6 706 706 HOH HOH . Q 8 HOH A 7 707 707 HOH HOH . Q 8 HOH A 8 708 708 HOH HOH . Q 8 HOH A 9 709 709 HOH HOH . Q 8 HOH A 10 710 710 HOH HOH . Q 8 HOH A 11 711 711 HOH HOH . Q 8 HOH A 12 712 712 HOH HOH . Q 8 HOH A 13 713 713 HOH HOH . Q 8 HOH A 14 714 714 HOH HOH . Q 8 HOH A 15 715 715 HOH HOH . Q 8 HOH A 16 716 716 HOH HOH . Q 8 HOH A 17 717 717 HOH HOH . Q 8 HOH A 18 718 718 HOH HOH . Q 8 HOH A 19 719 719 HOH HOH . Q 8 HOH A 20 720 720 HOH HOH . Q 8 HOH A 21 721 721 HOH HOH . Q 8 HOH A 22 722 722 HOH HOH . Q 8 HOH A 23 723 723 HOH HOH . Q 8 HOH A 24 724 724 HOH HOH . Q 8 HOH A 25 725 725 HOH HOH . Q 8 HOH A 26 726 726 HOH HOH . Q 8 HOH A 27 727 727 HOH HOH . Q 8 HOH A 28 728 728 HOH HOH . Q 8 HOH A 29 729 729 HOH HOH . Q 8 HOH A 30 730 730 HOH HOH . Q 8 HOH A 31 731 731 HOH HOH . Q 8 HOH A 32 732 732 HOH HOH . Q 8 HOH A 33 733 733 HOH HOH . Q 8 HOH A 34 734 734 HOH HOH . Q 8 HOH A 35 735 735 HOH HOH . Q 8 HOH A 36 736 736 HOH HOH . Q 8 HOH A 37 737 737 HOH HOH . Q 8 HOH A 38 738 738 HOH HOH . Q 8 HOH A 39 739 739 HOH HOH . Q 8 HOH A 40 740 740 HOH HOH . Q 8 HOH A 41 741 741 HOH HOH . Q 8 HOH A 42 742 742 HOH HOH . Q 8 HOH A 43 743 743 HOH HOH . Q 8 HOH A 44 744 744 HOH HOH . Q 8 HOH A 45 745 745 HOH HOH . Q 8 HOH A 46 746 746 HOH HOH . Q 8 HOH A 47 747 747 HOH HOH . Q 8 HOH A 48 748 748 HOH HOH . Q 8 HOH A 49 749 729 HOH HOH . R 8 HOH B 1 701 701 HOH HOH . R 8 HOH B 2 702 702 HOH HOH . R 8 HOH B 3 703 703 HOH HOH . R 8 HOH B 4 704 704 HOH HOH . R 8 HOH B 5 705 705 HOH HOH . R 8 HOH B 6 706 706 HOH HOH . R 8 HOH B 7 707 707 HOH HOH . R 8 HOH B 8 708 708 HOH HOH . R 8 HOH B 9 709 709 HOH HOH . R 8 HOH B 10 710 710 HOH HOH . R 8 HOH B 11 711 711 HOH HOH . R 8 HOH B 12 712 712 HOH HOH . R 8 HOH B 13 713 713 HOH HOH . R 8 HOH B 14 714 714 HOH HOH . R 8 HOH B 15 715 715 HOH HOH . R 8 HOH B 16 716 716 HOH HOH . R 8 HOH B 17 717 717 HOH HOH . R 8 HOH B 18 718 718 HOH HOH . R 8 HOH B 19 719 719 HOH HOH . R 8 HOH B 20 720 720 HOH HOH . R 8 HOH B 21 721 721 HOH HOH . R 8 HOH B 22 722 722 HOH HOH . R 8 HOH B 23 723 723 HOH HOH . R 8 HOH B 24 724 724 HOH HOH . R 8 HOH B 25 725 725 HOH HOH . R 8 HOH B 26 726 726 HOH HOH . R 8 HOH B 27 727 727 HOH HOH . R 8 HOH B 28 728 728 HOH HOH . R 8 HOH B 29 729 730 HOH HOH . R 8 HOH B 30 730 731 HOH HOH . R 8 HOH B 31 731 732 HOH HOH . R 8 HOH B 32 732 733 HOH HOH . R 8 HOH B 33 733 734 HOH HOH . R 8 HOH B 34 734 735 HOH HOH . R 8 HOH B 35 735 736 HOH HOH . R 8 HOH B 36 736 737 HOH HOH . R 8 HOH B 37 737 738 HOH HOH . R 8 HOH B 38 738 739 HOH HOH . R 8 HOH B 39 739 740 HOH HOH . R 8 HOH B 40 740 741 HOH HOH . R 8 HOH B 41 741 742 HOH HOH . R 8 HOH B 42 742 743 HOH HOH . R 8 HOH B 43 743 744 HOH HOH . R 8 HOH B 44 744 745 HOH HOH . R 8 HOH B 45 745 746 HOH HOH . R 8 HOH B 46 746 747 HOH HOH . R 8 HOH B 47 747 748 HOH HOH . R 8 HOH B 48 748 749 HOH HOH . R 8 HOH B 49 749 750 HOH HOH . R 8 HOH B 50 750 751 HOH HOH . R 8 HOH B 51 751 752 HOH HOH . R 8 HOH B 52 752 753 HOH HOH . R 8 HOH B 53 753 754 HOH HOH . R 8 HOH B 54 754 755 HOH HOH . R 8 HOH B 55 755 756 HOH HOH . R 8 HOH B 56 756 757 HOH HOH . R 8 HOH B 57 757 758 HOH HOH . R 8 HOH B 58 758 759 HOH HOH . R 8 HOH B 59 759 760 HOH HOH . R 8 HOH B 60 760 761 HOH HOH . R 8 HOH B 61 761 762 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 1KS . . . L 2 -9.852 9.84 -1.637 1 67.99 ? F1 1KS 601 B 1 HETATM 2 C C1 1KS . . . L 2 -10.337 9.019 -2.56 1 60.26 ? C1 1KS 601 B 1 HETATM 3 O O1 1KS . . . L 2 -11.168 5.819 -6.343 1 55.05 ? O1 1KS 601 B 1 HETATM 4 N N1 1KS . . . L 2 -13.412 6.285 -5.809 1 55.63 ? N1 1KS 601 B 1 HETATM 5 C C10 1KS . . . L 2 -13.933 5.467 -6.928 1 56.01 ? C10 1KS 601 B 1 HETATM 6 C C11 1KS . . . L 2 -14.188 6.369 -8.117 1 55.8 ? C11 1KS 601 B 1 HETATM 7 C C12 1KS . . . L 2 -14.623 5.562 -9.321 1 55.53 ? C12 1KS 601 B 1 HETATM 8 C C13 1KS . . . L 2 -15.502 3.78 -7.852 1 55.4 ? C13 1KS 601 B 1 HETATM 9 C C14 1KS . . . L 2 -15.098 4.547 -6.604 1 54.83 ? C14 1KS 601 B 1 HETATM 10 C C15 1KS . . . L 2 -17.053 4.979 -9.407 1 56.11 ? C15 1KS 601 B 1 HETATM 11 C C16 1KS . . . L 2 -17.487 5.022 -10.767 1 55.85 ? C16 1KS 601 B 1 HETATM 12 C C17 1KS . . . L 2 -18.894 5.293 -11.027 1 56.34 ? C17 1KS 601 B 1 HETATM 13 C C18 1KS . . . L 2 -19.33 5.37 -12.37 1 56.45 ? C18 1KS 601 B 1 HETATM 14 C C19 1KS . . . L 2 -18.446 5.213 -13.429 1 57.04 ? C19 1KS 601 B 1 HETATM 15 C C2 1KS . . . L 2 -10.517 7.569 -2.241 1 57.46 ? C2 1KS 601 B 1 HETATM 16 F F2 1KS . . . L 2 -10.391 4.524 -3.6 1 60.2 ? F2 1KS 601 B 1 HETATM 17 N N2 1KS . . . L 2 -15.67 4.584 -9.077 1 56.26 ? N2 1KS 601 B 1 HETATM 18 C C20 1KS . . . L 2 -17.081 4.956 -13.176 1 56.31 ? C20 1KS 601 B 1 HETATM 19 C C21 1KS . . . L 2 -16.645 4.812 -11.854 1 55.97 ? C21 1KS 601 B 1 HETATM 20 C C22 1KS . . . L 2 -19.706 5.434 -9.88 1 57.37 ? C22 1KS 601 B 1 HETATM 21 C C23 1KS . . . L 2 -21.242 5.59 -10.043 1 56.78 ? C23 1KS 601 B 1 HETATM 22 C C24 1KS . . . L 2 -22.106 4.621 -10.554 1 56.76 ? C24 1KS 601 B 1 HETATM 23 C C25 1KS . . . L 2 -23.388 5.21 -10.49 1 61.08 ? C25 1KS 601 B 1 HETATM 24 C C26 1KS . . . L 2 -21.566 7.886 -9.12 1 56.93 ? C26 1KS 601 B 1 HETATM 25 C C3 1KS . . . L 2 -11.044 6.709 -3.178 1 55.14 ? C3 1KS 601 B 1 HETATM 26 F F3 1KS . . . L 2 -12.462 4.853 -3.162 1 58.07 ? F3 1KS 601 B 1 HETATM 27 N N3 1KS . . . L 2 -19.261 5.317 -8.647 1 55.52 ? N3 1KS 601 B 1 HETATM 28 C C4 1KS . . . L 2 -11.231 5.253 -2.869 1 58.44 ? C4 1KS 601 B 1 HETATM 29 F F4 1KS . . . L 2 -10.987 4.997 -1.592 1 61.6 ? F4 1KS 601 B 1 HETATM 30 N N4 1KS . . . L 2 -17.945 5.058 -8.422 1 55.22 ? N4 1KS 601 B 1 HETATM 31 C C5 1KS . . . L 2 -11.387 7.265 -4.539 1 53.6 ? C5 1KS 601 B 1 HETATM 32 N N5 1KS . . . L 2 -23.372 6.482 -9.949 1 61.54 ? N5 1KS 601 B 1 HETATM 33 C C6 1KS . . . L 2 -11.209 8.595 -4.829 1 55.36 ? C6 1KS 601 B 1 HETATM 34 N N6 1KS . . . L 2 -22.064 6.677 -9.673 1 58.21 ? N6 1KS 601 B 1 HETATM 35 C C7 1KS . . . L 2 -10.653 9.526 -3.792 1 57.12 ? C7 1KS 601 B 1 HETATM 36 C C8 1KS . . . L 2 -11.963 6.401 -5.627 1 54.53 ? C8 1KS 601 B 1 HETATM 37 C C9 1KS . . . L 2 -14.355 6.997 -4.931 1 53.44 ? C9 1KS 601 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #