data_4JKV # _model_server_result.job_id 7MX6sFHcAN3jFCK4aYCfdw _model_server_result.datetime_utc '2024-11-14 17:15:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 4JKV # _exptl.entry_id 4JKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.27 _cell.angle_gamma 90 _cell.entry_id 4JKV _cell.length_a 75.444 _cell.length_b 98.177 _cell.length_c 84.293 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 193 1_555 A SG CYS 133 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 137 A CYS 217 1_555 A SG CYS 215 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 234 A CYS 314 1_555 A SG CYS 310 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 410 A CYS 490 1_555 A SG CYS 427 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 113 B CYS 193 1_555 B SG CYS 133 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 137 B CYS 217 1_555 B SG CYS 215 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 B SG CYS 234 B CYS 314 1_555 B SG CYS 310 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 B SG CYS 410 B CYS 490 1_555 B SG CYS 427 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 355 n n C10 C9 OLC doub 356 n n C10 C11 OLC sing 357 n n C9 C8 OLC sing 358 n n C17 C16 OLC sing 359 z n C11 C12 OLC sing 360 n n C8 C7 OLC sing 361 n n C24 C22 OLC sing 362 n n C24 O25 OLC sing 363 n n C16 C15 OLC sing 364 n n C12 C13 OLC sing 365 n n C7 C6 OLC sing 366 n n C15 C14 OLC sing 367 n n C13 C14 OLC sing 368 n n C6 C5 OLC sing 369 n n C5 C4 OLC sing 370 n n C4 C3 OLC sing 371 n n C3 C2 OLC sing 372 n n C2 C1 OLC sing 373 n n C21 C22 OLC sing 374 n n C21 O20 OLC sing 375 n n C1 O19 OLC doub 376 n n C1 O20 OLC sing 377 n n C22 O23 OLC sing 378 n n C18 H18 OLC sing 379 n n C18 H18A OLC sing 380 n n C18 H18B OLC sing 381 n n C10 H10 OLC sing 382 n n C9 H9 OLC sing 383 n n C17 H17 OLC sing 384 n n C17 H17A OLC sing 385 n n C11 H11 OLC sing 386 n n C11 H11A OLC sing 387 n n C8 H8 OLC sing 388 n n C8 H8A OLC sing 389 n n C24 H24 OLC sing 390 n n C24 H24A OLC sing 391 n n C16 H16 OLC sing 392 n n C16 H16A OLC sing 393 n n C12 H12 OLC sing 394 n n C12 H12A OLC sing 395 n n C7 H7 OLC sing 396 n n C7 H7A OLC sing 397 n n C15 H15 OLC sing 398 n n C15 H15A OLC sing 399 n n C13 H13 OLC sing 400 n n C13 H13A OLC sing 401 n n C6 H6 OLC sing 402 n n C6 H6A OLC sing 403 n n C14 H14 OLC sing 404 n n C14 H14A OLC sing 405 n n C5 H5 OLC sing 406 n n C5 H5A OLC sing 407 n n C4 H4 OLC sing 408 n n C4 H4A OLC sing 409 n n C3 H3 OLC sing 410 n n C3 H3A OLC sing 411 n n C2 H2 OLC sing 412 n n C2 H2A OLC sing 413 n n C21 H21 OLC sing 414 n n C21 H21A OLC sing 415 n n C22 H22 OLC sing 416 n n O25 HO25 OLC sing 417 n n O23 HO23 OLC sing 418 n n # _atom_sites.entry_id 4JKV _atom_sites.fract_transf_matrix[1][1] 0.013255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003126 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1KS A 1 601 601 1KS 1KS . D 3 OLC A 1 602 602 OLC OLC . E 3 OLC A 1 603 603 OLC OLC . F 3 OLC A 1 604 604 OLC OLC . G 4 OLA A 1 605 605 OLA OLA . H 4 OLA A 1 606 606 OLA OLA . I 5 PEG A 1 607 607 PEG PEG . J 6 PGE A 1 608 608 PGE PGE . K 7 PG4 A 1 609 609 PG4 PG4 . L 2 1KS B 1 601 601 1KS 1KS . M 3 OLC B 1 602 602 OLC OLC . N 3 OLC B 1 603 603 OLC OLC . O 4 OLA B 1 604 604 OLA OLA . P 5 PEG B 1 605 605 PEG PEG . Q 8 HOH A 1 701 701 HOH HOH . Q 8 HOH A 2 702 702 HOH HOH . Q 8 HOH A 3 703 703 HOH HOH . Q 8 HOH A 4 704 704 HOH HOH . Q 8 HOH A 5 705 705 HOH HOH . Q 8 HOH A 6 706 706 HOH HOH . Q 8 HOH A 7 707 707 HOH HOH . Q 8 HOH A 8 708 708 HOH HOH . Q 8 HOH A 9 709 709 HOH HOH . Q 8 HOH A 10 710 710 HOH HOH . Q 8 HOH A 11 711 711 HOH HOH . Q 8 HOH A 12 712 712 HOH HOH . Q 8 HOH A 13 713 713 HOH HOH . Q 8 HOH A 14 714 714 HOH HOH . Q 8 HOH A 15 715 715 HOH HOH . Q 8 HOH A 16 716 716 HOH HOH . Q 8 HOH A 17 717 717 HOH HOH . Q 8 HOH A 18 718 718 HOH HOH . Q 8 HOH A 19 719 719 HOH HOH . Q 8 HOH A 20 720 720 HOH HOH . Q 8 HOH A 21 721 721 HOH HOH . Q 8 HOH A 22 722 722 HOH HOH . Q 8 HOH A 23 723 723 HOH HOH . Q 8 HOH A 24 724 724 HOH HOH . Q 8 HOH A 25 725 725 HOH HOH . Q 8 HOH A 26 726 726 HOH HOH . Q 8 HOH A 27 727 727 HOH HOH . Q 8 HOH A 28 728 728 HOH HOH . Q 8 HOH A 29 729 729 HOH HOH . Q 8 HOH A 30 730 730 HOH HOH . Q 8 HOH A 31 731 731 HOH HOH . Q 8 HOH A 32 732 732 HOH HOH . Q 8 HOH A 33 733 733 HOH HOH . Q 8 HOH A 34 734 734 HOH HOH . Q 8 HOH A 35 735 735 HOH HOH . Q 8 HOH A 36 736 736 HOH HOH . Q 8 HOH A 37 737 737 HOH HOH . Q 8 HOH A 38 738 738 HOH HOH . Q 8 HOH A 39 739 739 HOH HOH . Q 8 HOH A 40 740 740 HOH HOH . Q 8 HOH A 41 741 741 HOH HOH . Q 8 HOH A 42 742 742 HOH HOH . Q 8 HOH A 43 743 743 HOH HOH . Q 8 HOH A 44 744 744 HOH HOH . Q 8 HOH A 45 745 745 HOH HOH . Q 8 HOH A 46 746 746 HOH HOH . Q 8 HOH A 47 747 747 HOH HOH . Q 8 HOH A 48 748 748 HOH HOH . Q 8 HOH A 49 749 729 HOH HOH . R 8 HOH B 1 701 701 HOH HOH . R 8 HOH B 2 702 702 HOH HOH . R 8 HOH B 3 703 703 HOH HOH . R 8 HOH B 4 704 704 HOH HOH . R 8 HOH B 5 705 705 HOH HOH . R 8 HOH B 6 706 706 HOH HOH . R 8 HOH B 7 707 707 HOH HOH . R 8 HOH B 8 708 708 HOH HOH . R 8 HOH B 9 709 709 HOH HOH . R 8 HOH B 10 710 710 HOH HOH . R 8 HOH B 11 711 711 HOH HOH . R 8 HOH B 12 712 712 HOH HOH . R 8 HOH B 13 713 713 HOH HOH . R 8 HOH B 14 714 714 HOH HOH . R 8 HOH B 15 715 715 HOH HOH . R 8 HOH B 16 716 716 HOH HOH . R 8 HOH B 17 717 717 HOH HOH . R 8 HOH B 18 718 718 HOH HOH . R 8 HOH B 19 719 719 HOH HOH . R 8 HOH B 20 720 720 HOH HOH . R 8 HOH B 21 721 721 HOH HOH . R 8 HOH B 22 722 722 HOH HOH . R 8 HOH B 23 723 723 HOH HOH . R 8 HOH B 24 724 724 HOH HOH . R 8 HOH B 25 725 725 HOH HOH . R 8 HOH B 26 726 726 HOH HOH . R 8 HOH B 27 727 727 HOH HOH . R 8 HOH B 28 728 728 HOH HOH . R 8 HOH B 29 729 730 HOH HOH . R 8 HOH B 30 730 731 HOH HOH . R 8 HOH B 31 731 732 HOH HOH . R 8 HOH B 32 732 733 HOH HOH . R 8 HOH B 33 733 734 HOH HOH . R 8 HOH B 34 734 735 HOH HOH . R 8 HOH B 35 735 736 HOH HOH . R 8 HOH B 36 736 737 HOH HOH . R 8 HOH B 37 737 738 HOH HOH . R 8 HOH B 38 738 739 HOH HOH . R 8 HOH B 39 739 740 HOH HOH . R 8 HOH B 40 740 741 HOH HOH . R 8 HOH B 41 741 742 HOH HOH . R 8 HOH B 42 742 743 HOH HOH . R 8 HOH B 43 743 744 HOH HOH . R 8 HOH B 44 744 745 HOH HOH . R 8 HOH B 45 745 746 HOH HOH . R 8 HOH B 46 746 747 HOH HOH . R 8 HOH B 47 747 748 HOH HOH . R 8 HOH B 48 748 749 HOH HOH . R 8 HOH B 49 749 750 HOH HOH . R 8 HOH B 50 750 751 HOH HOH . R 8 HOH B 51 751 752 HOH HOH . R 8 HOH B 52 752 753 HOH HOH . R 8 HOH B 53 753 754 HOH HOH . R 8 HOH B 54 754 755 HOH HOH . R 8 HOH B 55 755 756 HOH HOH . R 8 HOH B 56 756 757 HOH HOH . R 8 HOH B 57 757 758 HOH HOH . R 8 HOH B 58 758 759 HOH HOH . R 8 HOH B 59 759 760 HOH HOH . R 8 HOH B 60 760 761 HOH HOH . R 8 HOH B 61 761 762 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 OLC . . . D 3 -50.808 29.345 23.039 1 86.96 ? C8 OLC 602 A 1 HETATM 2 C C24 OLC . . . D 3 -62.497 30.281 16.766 1 105.21 ? C24 OLC 602 A 1 HETATM 3 C C7 OLC . . . D 3 -51.695 29.455 21.805 1 86.91 ? C7 OLC 602 A 1 HETATM 4 C C6 OLC . . . D 3 -53.151 29.15 22.135 1 87.99 ? C6 OLC 602 A 1 HETATM 5 C C5 OLC . . . D 3 -53.9 28.661 20.899 1 90.02 ? C5 OLC 602 A 1 HETATM 6 C C4 OLC . . . D 3 -54.929 29.676 20.409 1 92.48 ? C4 OLC 602 A 1 HETATM 7 C C3 OLC . . . D 3 -55.742 29.128 19.238 1 95.45 ? C3 OLC 602 A 1 HETATM 8 C C2 OLC . . . D 3 -57.163 28.746 19.658 1 98.19 ? C2 OLC 602 A 1 HETATM 9 C C21 OLC . . . D 3 -60.094 29.867 17.314 1 103.88 ? C21 OLC 602 A 1 HETATM 10 C C1 OLC . . . D 3 -58.198 29.64 19.003 1 100.89 ? C1 OLC 602 A 1 HETATM 11 C C22 OLC . . . D 3 -61.537 29.539 17.694 1 105.43 ? C22 OLC 602 A 1 HETATM 12 O O19 OLC . . . D 3 -58.234 30.833 19.277 1 101.32 ? O19 OLC 602 A 1 HETATM 13 O O25 OLC . . . D 3 -63.833 29.781 16.922 1 105.1 ? O25 OLC 602 A 1 HETATM 14 O O23 OLC . . . D 3 -61.759 28.126 17.583 1 106.63 ? O23 OLC 602 A 1 HETATM 15 O O20 OLC . . . D 3 -59.172 29.069 18.07 1 102.67 ? O20 OLC 602 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #