data_4JKV
#
_model_server_result.job_id            3qau97-T1XTbJSQF8NrI4w 
_model_server_result.datetime_utc      '2024-11-26 22:40:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jkv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":604}' 
#
_entry.id    4JKV 
#
_exptl.entry_id    4JKV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.27 
_cell.angle_gamma         90 
_cell.entry_id            4JKV 
_cell.length_a            75.444 
_cell.length_b            98.177 
_cell.length_c            84.293 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JKV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 113 A CYS 193 1_555 A SG CYS 133 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 137 A CYS 217 1_555 A SG CYS 215 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 234 A CYS 314 1_555 A SG CYS 310 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 A SG CYS 410 A CYS 490 1_555 A SG CYS 427 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 113 B CYS 193 1_555 B SG CYS 133 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 137 B CYS 217 1_555 B SG CYS 215 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf7 B SG CYS 234 B CYS 314 1_555 B SG CYS 310 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf8 B SG CYS 410 B CYS 490 1_555 B SG CYS 427 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 355 n n 
C10 C9 OLC doub 356 n n 
C10 C11 OLC sing 357 n n 
C9 C8 OLC sing 358 n n 
C17 C16 OLC sing 359 z n 
C11 C12 OLC sing 360 n n 
C8 C7 OLC sing 361 n n 
C24 C22 OLC sing 362 n n 
C24 O25 OLC sing 363 n n 
C16 C15 OLC sing 364 n n 
C12 C13 OLC sing 365 n n 
C7 C6 OLC sing 366 n n 
C15 C14 OLC sing 367 n n 
C13 C14 OLC sing 368 n n 
C6 C5 OLC sing 369 n n 
C5 C4 OLC sing 370 n n 
C4 C3 OLC sing 371 n n 
C3 C2 OLC sing 372 n n 
C2 C1 OLC sing 373 n n 
C21 C22 OLC sing 374 n n 
C21 O20 OLC sing 375 n n 
C1 O19 OLC doub 376 n n 
C1 O20 OLC sing 377 n n 
C22 O23 OLC sing 378 n n 
C18 H18 OLC sing 379 n n 
C18 H18A OLC sing 380 n n 
C18 H18B OLC sing 381 n n 
C10 H10 OLC sing 382 n n 
C9 H9 OLC sing 383 n n 
C17 H17 OLC sing 384 n n 
C17 H17A OLC sing 385 n n 
C11 H11 OLC sing 386 n n 
C11 H11A OLC sing 387 n n 
C8 H8 OLC sing 388 n n 
C8 H8A OLC sing 389 n n 
C24 H24 OLC sing 390 n n 
C24 H24A OLC sing 391 n n 
C16 H16 OLC sing 392 n n 
C16 H16A OLC sing 393 n n 
C12 H12 OLC sing 394 n n 
C12 H12A OLC sing 395 n n 
C7 H7 OLC sing 396 n n 
C7 H7A OLC sing 397 n n 
C15 H15 OLC sing 398 n n 
C15 H15A OLC sing 399 n n 
C13 H13 OLC sing 400 n n 
C13 H13A OLC sing 401 n n 
C6 H6 OLC sing 402 n n 
C6 H6A OLC sing 403 n n 
C14 H14 OLC sing 404 n n 
C14 H14A OLC sing 405 n n 
C5 H5 OLC sing 406 n n 
C5 H5A OLC sing 407 n n 
C4 H4 OLC sing 408 n n 
C4 H4A OLC sing 409 n n 
C3 H3 OLC sing 410 n n 
C3 H3A OLC sing 411 n n 
C2 H2 OLC sing 412 n n 
C2 H2A OLC sing 413 n n 
C21 H21 OLC sing 414 n n 
C21 H21A OLC sing 415 n n 
C22 H22 OLC sing 416 n n 
O25 HO25 OLC sing 417 n n 
O23 HO23 OLC sing 418 n n 
#
_atom_sites.entry_id                     4JKV 
_atom_sites.fract_transf_matrix[1][1]    0.013255 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003126 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010186 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012189 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1KS A 1 601 601 1KS 1KS . 
D 3 OLC A 1 602 602 OLC OLC . 
E 3 OLC A 1 603 603 OLC OLC . 
F 3 OLC A 1 604 604 OLC OLC . 
G 4 OLA A 1 605 605 OLA OLA . 
H 4 OLA A 1 606 606 OLA OLA . 
I 5 PEG A 1 607 607 PEG PEG . 
J 6 PGE A 1 608 608 PGE PGE . 
K 7 PG4 A 1 609 609 PG4 PG4 . 
L 2 1KS B 1 601 601 1KS 1KS . 
M 3 OLC B 1 602 602 OLC OLC . 
N 3 OLC B 1 603 603 OLC OLC . 
O 4 OLA B 1 604 604 OLA OLA . 
P 5 PEG B 1 605 605 PEG PEG . 
Q 8 HOH A 1 701 701 HOH HOH . 
Q 8 HOH A 2 702 702 HOH HOH . 
Q 8 HOH A 3 703 703 HOH HOH . 
Q 8 HOH A 4 704 704 HOH HOH . 
Q 8 HOH A 5 705 705 HOH HOH . 
Q 8 HOH A 6 706 706 HOH HOH . 
Q 8 HOH A 7 707 707 HOH HOH . 
Q 8 HOH A 8 708 708 HOH HOH . 
Q 8 HOH A 9 709 709 HOH HOH . 
Q 8 HOH A 10 710 710 HOH HOH . 
Q 8 HOH A 11 711 711 HOH HOH . 
Q 8 HOH A 12 712 712 HOH HOH . 
Q 8 HOH A 13 713 713 HOH HOH . 
Q 8 HOH A 14 714 714 HOH HOH . 
Q 8 HOH A 15 715 715 HOH HOH . 
Q 8 HOH A 16 716 716 HOH HOH . 
Q 8 HOH A 17 717 717 HOH HOH . 
Q 8 HOH A 18 718 718 HOH HOH . 
Q 8 HOH A 19 719 719 HOH HOH . 
Q 8 HOH A 20 720 720 HOH HOH . 
Q 8 HOH A 21 721 721 HOH HOH . 
Q 8 HOH A 22 722 722 HOH HOH . 
Q 8 HOH A 23 723 723 HOH HOH . 
Q 8 HOH A 24 724 724 HOH HOH . 
Q 8 HOH A 25 725 725 HOH HOH . 
Q 8 HOH A 26 726 726 HOH HOH . 
Q 8 HOH A 27 727 727 HOH HOH . 
Q 8 HOH A 28 728 728 HOH HOH . 
Q 8 HOH A 29 729 729 HOH HOH . 
Q 8 HOH A 30 730 730 HOH HOH . 
Q 8 HOH A 31 731 731 HOH HOH . 
Q 8 HOH A 32 732 732 HOH HOH . 
Q 8 HOH A 33 733 733 HOH HOH . 
Q 8 HOH A 34 734 734 HOH HOH . 
Q 8 HOH A 35 735 735 HOH HOH . 
Q 8 HOH A 36 736 736 HOH HOH . 
Q 8 HOH A 37 737 737 HOH HOH . 
Q 8 HOH A 38 738 738 HOH HOH . 
Q 8 HOH A 39 739 739 HOH HOH . 
Q 8 HOH A 40 740 740 HOH HOH . 
Q 8 HOH A 41 741 741 HOH HOH . 
Q 8 HOH A 42 742 742 HOH HOH . 
Q 8 HOH A 43 743 743 HOH HOH . 
Q 8 HOH A 44 744 744 HOH HOH . 
Q 8 HOH A 45 745 745 HOH HOH . 
Q 8 HOH A 46 746 746 HOH HOH . 
Q 8 HOH A 47 747 747 HOH HOH . 
Q 8 HOH A 48 748 748 HOH HOH . 
Q 8 HOH A 49 749 729 HOH HOH . 
R 8 HOH B 1 701 701 HOH HOH . 
R 8 HOH B 2 702 702 HOH HOH . 
R 8 HOH B 3 703 703 HOH HOH . 
R 8 HOH B 4 704 704 HOH HOH . 
R 8 HOH B 5 705 705 HOH HOH . 
R 8 HOH B 6 706 706 HOH HOH . 
R 8 HOH B 7 707 707 HOH HOH . 
R 8 HOH B 8 708 708 HOH HOH . 
R 8 HOH B 9 709 709 HOH HOH . 
R 8 HOH B 10 710 710 HOH HOH . 
R 8 HOH B 11 711 711 HOH HOH . 
R 8 HOH B 12 712 712 HOH HOH . 
R 8 HOH B 13 713 713 HOH HOH . 
R 8 HOH B 14 714 714 HOH HOH . 
R 8 HOH B 15 715 715 HOH HOH . 
R 8 HOH B 16 716 716 HOH HOH . 
R 8 HOH B 17 717 717 HOH HOH . 
R 8 HOH B 18 718 718 HOH HOH . 
R 8 HOH B 19 719 719 HOH HOH . 
R 8 HOH B 20 720 720 HOH HOH . 
R 8 HOH B 21 721 721 HOH HOH . 
R 8 HOH B 22 722 722 HOH HOH . 
R 8 HOH B 23 723 723 HOH HOH . 
R 8 HOH B 24 724 724 HOH HOH . 
R 8 HOH B 25 725 725 HOH HOH . 
R 8 HOH B 26 726 726 HOH HOH . 
R 8 HOH B 27 727 727 HOH HOH . 
R 8 HOH B 28 728 728 HOH HOH . 
R 8 HOH B 29 729 730 HOH HOH . 
R 8 HOH B 30 730 731 HOH HOH . 
R 8 HOH B 31 731 732 HOH HOH . 
R 8 HOH B 32 732 733 HOH HOH . 
R 8 HOH B 33 733 734 HOH HOH . 
R 8 HOH B 34 734 735 HOH HOH . 
R 8 HOH B 35 735 736 HOH HOH . 
R 8 HOH B 36 736 737 HOH HOH . 
R 8 HOH B 37 737 738 HOH HOH . 
R 8 HOH B 38 738 739 HOH HOH . 
R 8 HOH B 39 739 740 HOH HOH . 
R 8 HOH B 40 740 741 HOH HOH . 
R 8 HOH B 41 741 742 HOH HOH . 
R 8 HOH B 42 742 743 HOH HOH . 
R 8 HOH B 43 743 744 HOH HOH . 
R 8 HOH B 44 744 745 HOH HOH . 
R 8 HOH B 45 745 746 HOH HOH . 
R 8 HOH B 46 746 747 HOH HOH . 
R 8 HOH B 47 747 748 HOH HOH . 
R 8 HOH B 48 748 749 HOH HOH . 
R 8 HOH B 49 749 750 HOH HOH . 
R 8 HOH B 50 750 751 HOH HOH . 
R 8 HOH B 51 751 752 HOH HOH . 
R 8 HOH B 52 752 753 HOH HOH . 
R 8 HOH B 53 753 754 HOH HOH . 
R 8 HOH B 54 754 755 HOH HOH . 
R 8 HOH B 55 755 756 HOH HOH . 
R 8 HOH B 56 756 757 HOH HOH . 
R 8 HOH B 57 757 758 HOH HOH . 
R 8 HOH B 58 758 759 HOH HOH . 
R 8 HOH B 59 759 760 HOH HOH . 
R 8 HOH B 60 760 761 HOH HOH . 
R 8 HOH B 61 761 762 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . F 3 -24.486 37.694 14.747 1 89.41 ? C24 OLC 604 A 1 
HETATM 2 C C7 OLC . . . F 3 -34.61 35.305 9.045 1 91.87 ? C7 OLC 604 A 1 
HETATM 3 C C6 OLC . . . F 3 -33.96 34.759 10.312 1 92.47 ? C6 OLC 604 A 1 
HETATM 4 C C5 OLC . . . F 3 -32.843 35.67 10.814 1 93 ? C5 OLC 604 A 1 
HETATM 5 C C4 OLC . . . F 3 -32.357 35.244 12.198 1 93.33 ? C4 OLC 604 A 1 
HETATM 6 C C3 OLC . . . F 3 -31.344 36.228 12.78 1 93.58 ? C3 OLC 604 A 1 
HETATM 7 C C2 OLC . . . F 3 -29.923 35.666 12.759 1 93.86 ? C2 OLC 604 A 1 
HETATM 8 C C21 OLC . . . F 3 -26.629 37.459 13.415 1 90.44 ? C21 OLC 604 A 1 
HETATM 9 C C1 OLC . . . F 3 -28.906 36.75 12.471 1 93.46 ? C1 OLC 604 A 1 
HETATM 10 C C22 OLC . . . F 3 -25.96 37.305 14.783 1 90.59 ? C22 OLC 604 A 1 
HETATM 11 O O19 OLC . . . F 3 -28.823 37.234 11.348 1 94.59 ? O19 OLC 604 A 1 
HETATM 12 O O25 OLC . . . F 3 -23.93 37.659 16.072 1 87.44 ? O25 OLC 604 A 1 
HETATM 13 O O23 OLC . . . F 3 -26.618 38.127 15.754 1 92.11 ? O23 OLC 604 A 1 
HETATM 14 O O20 OLC . . . F 3 -28.038 37.221 13.55 1 91.97 ? O20 OLC 604 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#