data_4JL4 # _model_server_result.job_id ibaXdmgRgEgVcRFFrs1wlA _model_server_result.datetime_utc '2024-11-04 20:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4JL4 # _exptl.entry_id 4JL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.462 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(biphenyl-4-yl)-2-(biphenyl-4-yloxy)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.31 _cell.angle_gamma 90 _cell.entry_id 4JL4 _cell.length_a 93.04 _cell.length_b 62.53 _cell.length_c 119.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D 2 1 B,E 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.52 31.265 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H22 O3' _chem_comp.formula_weight 394.462 _chem_comp.id AXY _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(biphenyl-4-yl)-2-(biphenyl-4-yloxy)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAH CAD AXY doub 70 n y CAH CAN AXY sing 71 n y CAD CAG AXY sing 72 n y CAN CBA AXY doub 73 n y CAG CAM AXY doub 74 n y CBA CAM AXY sing 75 n y CBA CBC AXY sing 76 n n CBC CAT AXY doub 77 n y CBC CAS AXY sing 78 n y CAT CAP AXY sing 79 n y CAS CAO AXY doub 80 n y CAP CAY AXY doub 81 n y CAO CAY AXY sing 82 n y CAY OAV AXY sing 83 n n CBD OAV AXY sing 84 n n CBD CAW AXY sing 85 n n CBD CAU AXY sing 86 n n OAB CAW AXY doub 87 n n CAW OAA AXY sing 88 n n CAU CAX AXY sing 89 n n CAX CAI AXY doub 90 n y CAX CAJ AXY sing 91 n y CAI CAQ AXY sing 92 n y CAJ CAR AXY doub 93 n y CAQ CBB AXY doub 94 n y CAR CBB AXY sing 95 n y CBB CAZ AXY sing 96 n n CAZ CAK AXY doub 97 n y CAZ CAL AXY sing 98 n y CAK CAE AXY sing 99 n y CAL CAF AXY doub 100 n y CAE CAC AXY doub 101 n y CAF CAC AXY sing 102 n y CAK H1 AXY sing 103 n n CAE H2 AXY sing 104 n n CAC H3 AXY sing 105 n n CAF H4 AXY sing 106 n n CAL H5 AXY sing 107 n n CAR H6 AXY sing 108 n n CAJ H7 AXY sing 109 n n CAQ H8 AXY sing 110 n n CAI H9 AXY sing 111 n n CAU H10 AXY sing 112 n n CAU H11 AXY sing 113 n n CBD H12 AXY sing 114 n n OAA H13 AXY sing 115 n n CAP H14 AXY sing 116 n n CAT H15 AXY sing 117 n n CAO H16 AXY sing 118 n n CAS H17 AXY sing 119 n n CAM H18 AXY sing 120 n n CAG H19 AXY sing 121 n n CAD H20 AXY sing 122 n n CAH H21 AXY sing 123 n n CAN H22 AXY sing 124 n n # _atom_sites.entry_id 4JL4 _atom_sites.fract_transf_matrix[1][1] 0.010748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002345 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AXY A 1 501 1 AXY AXY . D 3 HOH A 1 601 1 HOH TIP . D 3 HOH A 2 602 3 HOH TIP . D 3 HOH A 3 603 6 HOH TIP . D 3 HOH A 4 604 7 HOH TIP . D 3 HOH A 5 605 9 HOH TIP . D 3 HOH A 6 606 11 HOH TIP . D 3 HOH A 7 607 13 HOH TIP . D 3 HOH A 8 608 14 HOH TIP . D 3 HOH A 9 609 16 HOH TIP . D 3 HOH A 10 610 18 HOH TIP . D 3 HOH A 11 611 19 HOH TIP . D 3 HOH A 12 612 21 HOH TIP . D 3 HOH A 13 613 22 HOH TIP . D 3 HOH A 14 614 23 HOH TIP . D 3 HOH A 15 615 27 HOH TIP . D 3 HOH A 16 616 28 HOH TIP . D 3 HOH A 17 617 31 HOH TIP . D 3 HOH A 18 618 32 HOH TIP . D 3 HOH A 19 619 35 HOH TIP . D 3 HOH A 20 620 36 HOH TIP . D 3 HOH A 21 621 37 HOH TIP . D 3 HOH A 22 622 40 HOH TIP . D 3 HOH A 23 623 43 HOH TIP . D 3 HOH A 24 624 46 HOH TIP . D 3 HOH A 25 625 51 HOH TIP . D 3 HOH A 26 626 53 HOH TIP . D 3 HOH A 27 627 54 HOH TIP . D 3 HOH A 28 628 58 HOH TIP . D 3 HOH A 29 629 64 HOH TIP . D 3 HOH A 30 630 65 HOH TIP . D 3 HOH A 31 631 68 HOH TIP . D 3 HOH A 32 632 69 HOH TIP . D 3 HOH A 33 633 70 HOH TIP . D 3 HOH A 34 634 73 HOH TIP . D 3 HOH A 35 635 76 HOH TIP . D 3 HOH A 36 636 80 HOH TIP . D 3 HOH A 37 637 81 HOH TIP . D 3 HOH A 38 638 84 HOH TIP . D 3 HOH A 39 639 85 HOH TIP . D 3 HOH A 40 640 86 HOH TIP . D 3 HOH A 41 641 90 HOH TIP . D 3 HOH A 42 642 91 HOH TIP . D 3 HOH A 43 643 94 HOH TIP . D 3 HOH A 44 644 95 HOH TIP . D 3 HOH A 45 645 97 HOH TIP . D 3 HOH A 46 646 98 HOH TIP . D 3 HOH A 47 647 100 HOH TIP . D 3 HOH A 48 648 101 HOH TIP . D 3 HOH A 49 649 103 HOH TIP . D 3 HOH A 50 650 104 HOH TIP . D 3 HOH A 51 651 105 HOH TIP . D 3 HOH A 52 652 109 HOH TIP . D 3 HOH A 53 653 110 HOH TIP . D 3 HOH A 54 654 111 HOH TIP . D 3 HOH A 55 655 112 HOH TIP . D 3 HOH A 56 656 113 HOH TIP . D 3 HOH A 57 657 114 HOH TIP . D 3 HOH A 58 658 115 HOH TIP . D 3 HOH A 59 659 117 HOH TIP . D 3 HOH A 60 660 118 HOH TIP . D 3 HOH A 61 661 120 HOH TIP . D 3 HOH A 62 662 124 HOH TIP . D 3 HOH A 63 663 126 HOH TIP . D 3 HOH A 64 664 128 HOH TIP . D 3 HOH A 65 665 130 HOH TIP . D 3 HOH A 66 666 133 HOH TIP . D 3 HOH A 67 667 140 HOH TIP . D 3 HOH A 68 668 143 HOH TIP . D 3 HOH A 69 669 145 HOH TIP . D 3 HOH A 70 670 147 HOH TIP . D 3 HOH A 71 671 152 HOH TIP . D 3 HOH A 72 672 161 HOH TIP . D 3 HOH A 73 673 163 HOH TIP . D 3 HOH A 74 674 166 HOH TIP . D 3 HOH A 75 675 168 HOH TIP . D 3 HOH A 76 676 171 HOH TIP . D 3 HOH A 77 677 172 HOH TIP . D 3 HOH A 78 678 173 HOH TIP . D 3 HOH A 79 679 177 HOH TIP . D 3 HOH A 80 680 181 HOH TIP . D 3 HOH A 81 681 183 HOH TIP . D 3 HOH A 82 682 185 HOH TIP . D 3 HOH A 83 683 186 HOH TIP . D 3 HOH A 84 684 188 HOH TIP . D 3 HOH A 85 685 190 HOH TIP . D 3 HOH A 86 686 191 HOH TIP . D 3 HOH A 87 687 192 HOH TIP . D 3 HOH A 88 688 195 HOH TIP . D 3 HOH A 89 689 198 HOH TIP . D 3 HOH A 90 690 200 HOH TIP . D 3 HOH A 91 691 202 HOH TIP . D 3 HOH A 92 692 203 HOH TIP . E 3 HOH B 1 501 2 HOH TIP . E 3 HOH B 2 502 4 HOH TIP . E 3 HOH B 3 503 5 HOH TIP . E 3 HOH B 4 504 8 HOH TIP . E 3 HOH B 5 505 10 HOH TIP . E 3 HOH B 6 506 12 HOH TIP . E 3 HOH B 7 507 15 HOH TIP . E 3 HOH B 8 508 17 HOH TIP . E 3 HOH B 9 509 20 HOH TIP . E 3 HOH B 10 510 24 HOH TIP . E 3 HOH B 11 511 25 HOH TIP . E 3 HOH B 12 512 26 HOH TIP . E 3 HOH B 13 513 29 HOH TIP . E 3 HOH B 14 514 33 HOH TIP . E 3 HOH B 15 515 34 HOH TIP . E 3 HOH B 16 516 38 HOH TIP . E 3 HOH B 17 517 39 HOH TIP . E 3 HOH B 18 518 41 HOH TIP . E 3 HOH B 19 519 42 HOH TIP . E 3 HOH B 20 520 44 HOH TIP . E 3 HOH B 21 521 47 HOH TIP . E 3 HOH B 22 522 48 HOH TIP . E 3 HOH B 23 523 50 HOH TIP . E 3 HOH B 24 524 52 HOH TIP . E 3 HOH B 25 525 55 HOH TIP . E 3 HOH B 26 526 56 HOH TIP . E 3 HOH B 27 527 57 HOH TIP . E 3 HOH B 28 528 59 HOH TIP . E 3 HOH B 29 529 60 HOH TIP . E 3 HOH B 30 530 62 HOH TIP . E 3 HOH B 31 531 63 HOH TIP . E 3 HOH B 32 532 66 HOH TIP . E 3 HOH B 33 533 67 HOH TIP . E 3 HOH B 34 534 71 HOH TIP . E 3 HOH B 35 535 72 HOH TIP . E 3 HOH B 36 536 74 HOH TIP . E 3 HOH B 37 537 75 HOH TIP . E 3 HOH B 38 538 77 HOH TIP . E 3 HOH B 39 539 79 HOH TIP . E 3 HOH B 40 540 82 HOH TIP . E 3 HOH B 41 541 83 HOH TIP . E 3 HOH B 42 542 87 HOH TIP . E 3 HOH B 43 543 88 HOH TIP . E 3 HOH B 44 544 89 HOH TIP . E 3 HOH B 45 545 92 HOH TIP . E 3 HOH B 46 546 93 HOH TIP . E 3 HOH B 47 547 96 HOH TIP . E 3 HOH B 48 548 99 HOH TIP . E 3 HOH B 49 549 102 HOH TIP . E 3 HOH B 50 550 106 HOH TIP . E 3 HOH B 51 551 107 HOH TIP . E 3 HOH B 52 552 108 HOH TIP . E 3 HOH B 53 553 116 HOH TIP . E 3 HOH B 54 554 119 HOH TIP . E 3 HOH B 55 555 122 HOH TIP . E 3 HOH B 56 556 125 HOH TIP . E 3 HOH B 57 557 127 HOH TIP . E 3 HOH B 58 558 129 HOH TIP . E 3 HOH B 59 559 131 HOH TIP . E 3 HOH B 60 560 132 HOH TIP . E 3 HOH B 61 561 134 HOH TIP . E 3 HOH B 62 562 136 HOH TIP . E 3 HOH B 63 563 137 HOH TIP . E 3 HOH B 64 564 139 HOH TIP . E 3 HOH B 65 565 142 HOH TIP . E 3 HOH B 66 566 148 HOH TIP . E 3 HOH B 67 567 149 HOH TIP . E 3 HOH B 68 568 150 HOH TIP . E 3 HOH B 69 569 153 HOH TIP . E 3 HOH B 70 570 154 HOH TIP . E 3 HOH B 71 571 155 HOH TIP . E 3 HOH B 72 572 157 HOH TIP . E 3 HOH B 73 573 158 HOH TIP . E 3 HOH B 74 574 159 HOH TIP . E 3 HOH B 75 575 160 HOH TIP . E 3 HOH B 76 576 162 HOH TIP . E 3 HOH B 77 577 164 HOH TIP . E 3 HOH B 78 578 165 HOH TIP . E 3 HOH B 79 579 169 HOH TIP . E 3 HOH B 80 580 170 HOH TIP . E 3 HOH B 81 581 174 HOH TIP . E 3 HOH B 82 582 175 HOH TIP . E 3 HOH B 83 583 176 HOH TIP . E 3 HOH B 84 584 178 HOH TIP . E 3 HOH B 85 585 179 HOH TIP . E 3 HOH B 86 586 180 HOH TIP . E 3 HOH B 87 587 182 HOH TIP . E 3 HOH B 88 588 184 HOH TIP . E 3 HOH B 89 589 187 HOH TIP . E 3 HOH B 90 590 193 HOH TIP . E 3 HOH B 91 591 194 HOH TIP . E 3 HOH B 92 592 196 HOH TIP . E 3 HOH B 93 593 197 HOH TIP . E 3 HOH B 94 594 204 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAK AXY . . . C 2 19.792 17.931 16.922 0.7 84.02 ? CAK AXY 501 A 1 HETATM 2 C CAE AXY . . . C 2 20.077 18.363 18.212 0.7 83.54 ? CAE AXY 501 A 1 HETATM 3 C CAC AXY . . . C 2 19.248 17.994 19.265 0.7 83.57 ? CAC AXY 501 A 1 HETATM 4 C CAF AXY . . . C 2 18.142 17.183 19.029 0.7 83.92 ? CAF AXY 501 A 1 HETATM 5 C CAL AXY . . . C 2 17.853 16.764 17.737 0.7 83.93 ? CAL AXY 501 A 1 HETATM 6 C CAZ AXY . . . C 2 18.66 17.159 16.676 0.7 84.74 ? CAZ AXY 501 A 1 HETATM 7 C CBB AXY . . . C 2 18.317 16.814 15.372 0.7 85.43 ? CBB AXY 501 A 1 HETATM 8 C CAR AXY . . . C 2 16.981 16.625 15.038 0.7 85.67 ? CAR AXY 501 A 1 HETATM 9 C CAJ AXY . . . C 2 16.612 16.43 13.712 0.7 86.61 ? CAJ AXY 501 A 1 HETATM 10 C CAQ AXY . . . C 2 19.287 16.774 14.376 0.7 85.83 ? CAQ AXY 501 A 1 HETATM 11 C CAI AXY . . . C 2 18.919 16.591 13.047 0.7 86.16 ? CAI AXY 501 A 1 HETATM 12 C CAX AXY . . . C 2 17.581 16.407 12.715 0.7 86.86 ? CAX AXY 501 A 1 HETATM 13 C CAU AXY . . . C 2 17.224 16.142 11.398 0.7 87.43 ? CAU AXY 501 A 1 HETATM 14 C CBD AXY . . . C 2 16.936 17.439 10.64 0.7 88.41 ? CBD AXY 501 A 1 HETATM 15 C CAW AXY . . . C 2 15.726 18.141 11.265 0.7 89.75 ? CAW AXY 501 A 1 HETATM 16 O OAB AXY . . . C 2 14.639 18.024 10.658 0.7 90.34 ? OAB AXY 501 A 1 HETATM 17 O OAA AXY . . . C 2 15.941 18.865 12.259 0.7 91.81 ? OAA AXY 501 A 1 HETATM 18 O OAV AXY . . . C 2 18.1 18.271 10.664 0.7 87.68 ? OAV AXY 501 A 1 HETATM 19 C CAY AXY . . . C 2 17.945 19.371 9.876 0.7 87.17 ? CAY AXY 501 A 1 HETATM 20 C CAP AXY . . . C 2 16.73 19.681 9.265 0.7 86.78 ? CAP AXY 501 A 1 HETATM 21 C CAT AXY . . . C 2 16.575 20.875 8.573 0.7 86.46 ? CAT AXY 501 A 1 HETATM 22 C CAO AXY . . . C 2 19.015 20.243 9.739 0.7 87 ? CAO AXY 501 A 1 HETATM 23 C CAS AXY . . . C 2 18.878 21.413 9.001 0.7 87.08 ? CAS AXY 501 A 1 HETATM 24 C CBC AXY . . . C 2 17.648 21.748 8.44 0.7 86.39 ? CBC AXY 501 A 1 HETATM 25 C CBA AXY . . . C 2 17.497 22.97 7.802 0.7 85.87 ? CBA AXY 501 A 1 HETATM 26 C CAM AXY . . . C 2 16.436 23.807 8.125 0.7 85.19 ? CAM AXY 501 A 1 HETATM 27 C CAG AXY . . . C 2 16.343 25.067 7.546 0.7 85.27 ? CAG AXY 501 A 1 HETATM 28 C CAD AXY . . . C 2 17.299 25.48 6.622 0.7 85.11 ? CAD AXY 501 A 1 HETATM 29 C CAH AXY . . . C 2 18.356 24.644 6.289 0.7 85.02 ? CAH AXY 501 A 1 HETATM 30 C CAN AXY . . . C 2 18.454 23.39 6.88 0.7 85.83 ? CAN AXY 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 30 #