data_4JL9 # _model_server_result.job_id 50sMVdhU4V0tjRKqYsbQbQ _model_server_result.datetime_utc '2024-11-20 02:25:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4JL9 # _exptl.entry_id 4JL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 591.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JL9 _cell.length_a 140.782 _cell.length_b 140.782 _cell.length_c 86.57 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1,2 A,B 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 86.57 3 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 57.713333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H26 I N7 O2 S' _chem_comp.formula_weight 591.468 _chem_comp.id BX7 _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C33 BX7 doub 70 n y C34 S02 BX7 sing 71 n y C33 C32 BX7 sing 72 n y S02 C31 BX7 sing 73 n y C32 C31 BX7 doub 74 n y C31 C29 BX7 sing 75 n n C29 O04 BX7 doub 76 n n C29 N09 BX7 sing 77 n n N09 C23 BX7 sing 78 n n I01 C28 BX7 sing 79 n n C23 C19 BX7 sing 80 n n N07 C21 BX7 sing 81 n n N07 C26 BX7 sing 82 n n C21 C19 BX7 sing 83 n n C28 C26 BX7 doub 84 n y C28 C30 BX7 sing 85 n y C26 N10 BX7 sing 86 n y C30 N11 BX7 doub 87 n y N10 C27 BX7 doub 88 n y N11 C27 BX7 sing 89 n y C27 N08 BX7 sing 90 n n C25 C24 BX7 doub 91 n y C25 C22 BX7 sing 92 n y C24 C20 BX7 sing 93 n y N08 C22 BX7 sing 94 n n C22 C18 BX7 doub 95 n y C20 C17 BX7 doub 96 n y C18 C17 BX7 sing 97 n y C17 N06 BX7 sing 98 n n O03 C16 BX7 doub 99 n n N06 C16 BX7 sing 100 n n C16 N05 BX7 sing 101 n n N05 C15 BX7 sing 102 n n N05 C14 BX7 sing 103 n n C15 C12 BX7 sing 104 n n C14 C13 BX7 sing 105 n n C12 C13 BX7 sing 106 n n N06 H1 BX7 sing 107 n n N07 H2 BX7 sing 108 n n N08 H3 BX7 sing 109 n n N09 H4 BX7 sing 110 n n C12 H5 BX7 sing 111 n n C12 H6 BX7 sing 112 n n C13 H7 BX7 sing 113 n n C13 H8 BX7 sing 114 n n C14 H9 BX7 sing 115 n n C14 H10 BX7 sing 116 n n C15 H11 BX7 sing 117 n n C15 H12 BX7 sing 118 n n C18 H13 BX7 sing 119 n n C19 H14 BX7 sing 120 n n C19 H15 BX7 sing 121 n n C20 H16 BX7 sing 122 n n C21 H17 BX7 sing 123 n n C21 H18 BX7 sing 124 n n C23 H19 BX7 sing 125 n n C23 H20 BX7 sing 126 n n C24 H21 BX7 sing 127 n n C25 H22 BX7 sing 128 n n C30 H23 BX7 sing 129 n n C32 H24 BX7 sing 130 n n C33 H25 BX7 sing 131 n n C34 H26 BX7 sing 132 n n # _atom_sites.entry_id 4JL9 _atom_sites.fract_transf_matrix[1][1] 0.007103 _atom_sites.fract_transf_matrix[1][2] 0.004101 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id BX7 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id BX7 _pdbx_nonpoly_scheme.auth_mon_id BX7 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I01 BX7 . . . B 2 -0.212 32.778 46.772 0.42 102.47 ? I01 BX7 701 A 1 HETATM 2 S S02 BX7 . . . B 2 6.2 32.864 45.291 1 123.3 ? S02 BX7 701 A 1 HETATM 3 O O03 BX7 . . . B 2 -1.72 34.023 37.77 1 102.28 ? O03 BX7 701 A 1 HETATM 4 O O04 BX7 . . . B 2 3.302 34.192 44.91 1 92.17 ? O04 BX7 701 A 1 HETATM 5 N N05 BX7 . . . B 2 0.515 33.604 37.338 1 107.45 ? N05 BX7 701 A 1 HETATM 6 N N06 BX7 . . . B 2 -1.03 31.877 38.317 1 77.02 ? N06 BX7 701 A 1 HETATM 7 N N07 BX7 . . . B 2 0.444 31.768 43.682 1 85.36 ? N07 BX7 701 A 1 HETATM 8 N N08 BX7 . . . B 2 -4.126 31.13 42.128 1 54.97 ? N08 BX7 701 A 1 HETATM 9 N N09 BX7 . . . B 2 2.946 33.634 42.664 1 82.72 ? N09 BX7 701 A 1 HETATM 10 N N10 BX7 . . . B 2 -1.858 31.469 42.975 1 62.17 ? N10 BX7 701 A 1 HETATM 11 N N11 BX7 . . . B 2 -3.697 31.884 44.362 1 57.9 ? N11 BX7 701 A 1 HETATM 12 C C12 BX7 . . . B 2 2.377 34.898 36.655 1 116.44 ? C12 BX7 701 A 1 HETATM 13 C C13 BX7 . . . B 2 2.83 33.733 37.477 1 119.27 ? C13 BX7 701 A 1 HETATM 14 C C14 BX7 . . . B 2 1.68 32.771 37.322 1 115.64 ? C14 BX7 701 A 1 HETATM 15 C C15 BX7 . . . B 2 0.892 34.891 36.805 1 112.18 ? C15 BX7 701 A 1 HETATM 16 C C16 BX7 . . . B 2 -0.805 33.22 37.807 1 96.75 ? C16 BX7 701 A 1 HETATM 17 C C17 BX7 . . . B 2 -2.353 31.485 38.798 1 61.7 ? C17 BX7 701 A 1 HETATM 18 C C18 BX7 . . . B 2 -2.6 31.496 40.186 1 42.66 ? C18 BX7 701 A 1 HETATM 19 C C19 BX7 . . . B 2 0.659 33.412 41.897 1 90.95 ? C19 BX7 701 A 1 HETATM 20 C C20 BX7 . . . B 2 -3.363 31.103 37.917 1 50.8 ? C20 BX7 701 A 1 HETATM 21 C C21 BX7 . . . B 2 0.936 31.964 42.341 1 79.59 ? C21 BX7 701 A 1 HETATM 22 C C22 BX7 . . . B 2 -3.846 31.125 40.698 1 55.2 ? C22 BX7 701 A 1 HETATM 23 C C23 BX7 . . . B 2 1.654 34.339 42.583 1 87.1 ? C23 BX7 701 A 1 HETATM 24 C C24 BX7 . . . B 2 -4.607 30.735 38.423 1 44.7 ? C24 BX7 701 A 1 HETATM 25 C C25 BX7 . . . B 2 -4.852 30.745 39.811 1 59.92 ? C25 BX7 701 A 1 HETATM 26 C C26 BX7 . . . B 2 -0.991 31.817 43.941 1 77.11 ? C26 BX7 701 A 1 HETATM 27 C C27 BX7 . . . B 2 -3.192 31.506 43.176 1 52.55 ? C27 BX7 701 A 1 HETATM 28 C C28 BX7 . . . B 2 -1.502 32.222 45.198 1 63.74 ? C28 BX7 701 A 1 HETATM 29 C C29 BX7 . . . B 2 3.719 33.621 43.916 1 89.19 ? C29 BX7 701 A 1 HETATM 30 C C30 BX7 . . . B 2 -2.893 32.244 45.375 1 57.56 ? C30 BX7 701 A 1 HETATM 31 C C31 BX7 . . . B 2 5.056 32.87 43.953 1 78.62 ? C31 BX7 701 A 1 HETATM 32 C C32 BX7 . . . B 2 5.557 32.069 42.905 1 64.64 ? C32 BX7 701 A 1 HETATM 33 C C33 BX7 . . . B 2 6.768 31.508 43.193 1 75.8 ? C33 BX7 701 A 1 HETATM 34 C C34 BX7 . . . B 2 7.278 31.815 44.423 1 90.02 ? C34 BX7 701 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 34 #