data_4JLA # _model_server_result.job_id 7MoKiFiExTc4XdNHuLItlw _model_server_result.datetime_utc '2024-11-03 23:41:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4JLA # _exptl.entry_id 4JLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JLA _cell.length_a 66.94 _cell.length_b 73.89 _cell.length_c 87.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4JLA _atom_sites.fract_transf_matrix[1][1] 0.014939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 1 ADP ADP . D 2 ADP A 1 302 1 ADP ADP . E 2 ADP B 1 301 1 ADP ADP . F 2 ADP B 1 302 1 ADP ADP . G 3 HOH A 1 401 2 HOH HOH . G 3 HOH A 2 402 3 HOH HOH . G 3 HOH A 3 403 5 HOH HOH . G 3 HOH A 4 404 6 HOH HOH . G 3 HOH A 5 405 9 HOH HOH . G 3 HOH A 6 406 10 HOH HOH . G 3 HOH A 7 407 13 HOH HOH . G 3 HOH A 8 408 14 HOH HOH . G 3 HOH A 9 409 15 HOH HOH . G 3 HOH A 10 410 16 HOH HOH . G 3 HOH A 11 411 17 HOH HOH . G 3 HOH A 12 412 18 HOH HOH . G 3 HOH A 13 413 19 HOH HOH . G 3 HOH A 14 414 21 HOH HOH . G 3 HOH A 15 415 22 HOH HOH . G 3 HOH A 16 416 23 HOH HOH . G 3 HOH A 17 417 25 HOH HOH . G 3 HOH A 18 418 26 HOH HOH . G 3 HOH A 19 419 28 HOH HOH . G 3 HOH A 20 420 29 HOH HOH . G 3 HOH A 21 421 30 HOH HOH . G 3 HOH A 22 422 36 HOH HOH . G 3 HOH A 23 423 37 HOH HOH . G 3 HOH A 24 424 38 HOH HOH . G 3 HOH A 25 425 39 HOH HOH . G 3 HOH A 26 426 40 HOH HOH . G 3 HOH A 27 427 42 HOH HOH . G 3 HOH A 28 428 43 HOH HOH . G 3 HOH A 29 429 44 HOH HOH . G 3 HOH A 30 430 45 HOH HOH . G 3 HOH A 31 431 46 HOH HOH . G 3 HOH A 32 432 48 HOH HOH . G 3 HOH A 33 433 49 HOH HOH . G 3 HOH A 34 434 50 HOH HOH . G 3 HOH A 35 435 52 HOH HOH . G 3 HOH A 36 436 56 HOH HOH . G 3 HOH A 37 437 58 HOH HOH . G 3 HOH A 38 438 59 HOH HOH . G 3 HOH A 39 439 62 HOH HOH . G 3 HOH A 40 440 64 HOH HOH . G 3 HOH A 41 441 65 HOH HOH . G 3 HOH A 42 442 67 HOH HOH . G 3 HOH A 43 443 68 HOH HOH . G 3 HOH A 44 444 69 HOH HOH . G 3 HOH A 45 445 70 HOH HOH . G 3 HOH A 46 446 71 HOH HOH . G 3 HOH A 47 447 72 HOH HOH . G 3 HOH A 48 448 73 HOH HOH . G 3 HOH A 49 449 74 HOH HOH . G 3 HOH A 50 450 75 HOH HOH . G 3 HOH A 51 451 76 HOH HOH . G 3 HOH A 52 452 79 HOH HOH . G 3 HOH A 53 453 80 HOH HOH . G 3 HOH A 54 454 82 HOH HOH . G 3 HOH A 55 455 83 HOH HOH . G 3 HOH A 56 456 86 HOH HOH . G 3 HOH A 57 457 87 HOH HOH . G 3 HOH A 58 458 90 HOH HOH . G 3 HOH A 59 459 92 HOH HOH . G 3 HOH A 60 460 93 HOH HOH . G 3 HOH A 61 461 94 HOH HOH . G 3 HOH A 62 462 95 HOH HOH . G 3 HOH A 63 463 96 HOH HOH . G 3 HOH A 64 464 97 HOH HOH . G 3 HOH A 65 465 98 HOH HOH . G 3 HOH A 66 466 100 HOH HOH . G 3 HOH A 67 467 101 HOH HOH . G 3 HOH A 68 468 102 HOH HOH . G 3 HOH A 69 469 103 HOH HOH . G 3 HOH A 70 470 106 HOH HOH . G 3 HOH A 71 471 107 HOH HOH . G 3 HOH A 72 472 109 HOH HOH . G 3 HOH A 73 473 110 HOH HOH . G 3 HOH A 74 474 111 HOH HOH . G 3 HOH A 75 475 114 HOH HOH . G 3 HOH A 76 476 115 HOH HOH . G 3 HOH A 77 477 116 HOH HOH . G 3 HOH A 78 478 117 HOH HOH . G 3 HOH A 79 479 118 HOH HOH . G 3 HOH A 80 480 119 HOH HOH . G 3 HOH A 81 481 120 HOH HOH . G 3 HOH A 82 482 121 HOH HOH . G 3 HOH A 83 483 122 HOH HOH . G 3 HOH A 84 484 125 HOH HOH . G 3 HOH A 85 485 126 HOH HOH . G 3 HOH A 86 486 127 HOH HOH . G 3 HOH A 87 487 128 HOH HOH . G 3 HOH A 88 488 130 HOH HOH . G 3 HOH A 89 489 131 HOH HOH . G 3 HOH A 90 490 132 HOH HOH . G 3 HOH A 91 491 134 HOH HOH . G 3 HOH A 92 492 135 HOH HOH . G 3 HOH A 93 493 136 HOH HOH . G 3 HOH A 94 494 138 HOH HOH . G 3 HOH A 95 495 139 HOH HOH . G 3 HOH A 96 496 142 HOH HOH . G 3 HOH A 97 497 145 HOH HOH . G 3 HOH A 98 498 146 HOH HOH . G 3 HOH A 99 499 148 HOH HOH . G 3 HOH A 100 500 149 HOH HOH . G 3 HOH A 101 501 151 HOH HOH . G 3 HOH A 102 502 153 HOH HOH . G 3 HOH A 103 503 155 HOH HOH . G 3 HOH A 104 504 156 HOH HOH . G 3 HOH A 105 505 161 HOH HOH . G 3 HOH A 106 506 162 HOH HOH . G 3 HOH A 107 507 165 HOH HOH . G 3 HOH A 108 508 166 HOH HOH . G 3 HOH A 109 509 167 HOH HOH . G 3 HOH A 110 510 169 HOH HOH . G 3 HOH A 111 511 170 HOH HOH . G 3 HOH A 112 512 171 HOH HOH . G 3 HOH A 113 513 172 HOH HOH . G 3 HOH A 114 514 173 HOH HOH . G 3 HOH A 115 515 174 HOH HOH . G 3 HOH A 116 516 178 HOH HOH . G 3 HOH A 117 517 179 HOH HOH . G 3 HOH A 118 518 180 HOH HOH . G 3 HOH A 119 519 181 HOH HOH . G 3 HOH A 120 520 182 HOH HOH . G 3 HOH A 121 521 184 HOH HOH . G 3 HOH A 122 522 185 HOH HOH . G 3 HOH A 123 523 186 HOH HOH . G 3 HOH A 124 524 189 HOH HOH . G 3 HOH A 125 525 190 HOH HOH . G 3 HOH A 126 526 191 HOH HOH . G 3 HOH A 127 527 193 HOH HOH . G 3 HOH A 128 528 195 HOH HOH . G 3 HOH A 129 529 196 HOH HOH . G 3 HOH A 130 530 198 HOH HOH . G 3 HOH A 131 531 202 HOH HOH . G 3 HOH A 132 532 207 HOH HOH . G 3 HOH A 133 533 208 HOH HOH . G 3 HOH A 134 534 210 HOH HOH . G 3 HOH A 135 535 211 HOH HOH . G 3 HOH A 136 536 212 HOH HOH . G 3 HOH A 137 537 215 HOH HOH . G 3 HOH A 138 538 217 HOH HOH . G 3 HOH A 139 539 220 HOH HOH . G 3 HOH A 140 540 221 HOH HOH . G 3 HOH A 141 541 222 HOH HOH . G 3 HOH A 142 542 224 HOH HOH . G 3 HOH A 143 543 227 HOH HOH . G 3 HOH A 144 544 228 HOH HOH . G 3 HOH A 145 545 229 HOH HOH . G 3 HOH A 146 546 230 HOH HOH . G 3 HOH A 147 547 231 HOH HOH . H 3 HOH B 1 401 1 HOH HOH . H 3 HOH B 2 402 4 HOH HOH . H 3 HOH B 3 403 7 HOH HOH . H 3 HOH B 4 404 8 HOH HOH . H 3 HOH B 5 405 11 HOH HOH . H 3 HOH B 6 406 12 HOH HOH . H 3 HOH B 7 407 20 HOH HOH . H 3 HOH B 8 408 24 HOH HOH . H 3 HOH B 9 409 27 HOH HOH . H 3 HOH B 10 410 31 HOH HOH . H 3 HOH B 11 411 32 HOH HOH . H 3 HOH B 12 412 33 HOH HOH . H 3 HOH B 13 413 34 HOH HOH . H 3 HOH B 14 414 35 HOH HOH . H 3 HOH B 15 415 41 HOH HOH . H 3 HOH B 16 416 47 HOH HOH . H 3 HOH B 17 417 51 HOH HOH . H 3 HOH B 18 418 53 HOH HOH . H 3 HOH B 19 419 54 HOH HOH . H 3 HOH B 20 420 55 HOH HOH . H 3 HOH B 21 421 57 HOH HOH . H 3 HOH B 22 422 60 HOH HOH . H 3 HOH B 23 423 61 HOH HOH . H 3 HOH B 24 424 63 HOH HOH . H 3 HOH B 25 425 66 HOH HOH . H 3 HOH B 26 426 77 HOH HOH . H 3 HOH B 27 427 78 HOH HOH . H 3 HOH B 28 428 81 HOH HOH . H 3 HOH B 29 429 84 HOH HOH . H 3 HOH B 30 430 85 HOH HOH . H 3 HOH B 31 431 88 HOH HOH . H 3 HOH B 32 432 89 HOH HOH . H 3 HOH B 33 433 91 HOH HOH . H 3 HOH B 34 434 99 HOH HOH . H 3 HOH B 35 435 104 HOH HOH . H 3 HOH B 36 436 105 HOH HOH . H 3 HOH B 37 437 108 HOH HOH . H 3 HOH B 38 438 112 HOH HOH . H 3 HOH B 39 439 113 HOH HOH . H 3 HOH B 40 440 123 HOH HOH . H 3 HOH B 41 441 124 HOH HOH . H 3 HOH B 42 442 129 HOH HOH . H 3 HOH B 43 443 133 HOH HOH . H 3 HOH B 44 444 137 HOH HOH . H 3 HOH B 45 445 140 HOH HOH . H 3 HOH B 46 446 141 HOH HOH . H 3 HOH B 47 447 143 HOH HOH . H 3 HOH B 48 448 144 HOH HOH . H 3 HOH B 49 449 147 HOH HOH . H 3 HOH B 50 450 150 HOH HOH . H 3 HOH B 51 451 152 HOH HOH . H 3 HOH B 52 452 154 HOH HOH . H 3 HOH B 53 453 157 HOH HOH . H 3 HOH B 54 454 158 HOH HOH . H 3 HOH B 55 455 159 HOH HOH . H 3 HOH B 56 456 160 HOH HOH . H 3 HOH B 57 457 163 HOH HOH . H 3 HOH B 58 458 164 HOH HOH . H 3 HOH B 59 459 168 HOH HOH . H 3 HOH B 60 460 175 HOH HOH . H 3 HOH B 61 461 176 HOH HOH . H 3 HOH B 62 462 177 HOH HOH . H 3 HOH B 63 463 183 HOH HOH . H 3 HOH B 64 464 187 HOH HOH . H 3 HOH B 65 465 188 HOH HOH . H 3 HOH B 66 466 192 HOH HOH . H 3 HOH B 67 467 194 HOH HOH . H 3 HOH B 68 468 197 HOH HOH . H 3 HOH B 69 469 199 HOH HOH . H 3 HOH B 70 470 200 HOH HOH . H 3 HOH B 71 471 201 HOH HOH . H 3 HOH B 72 472 203 HOH HOH . H 3 HOH B 73 473 204 HOH HOH . H 3 HOH B 74 474 205 HOH HOH . H 3 HOH B 75 475 206 HOH HOH . H 3 HOH B 76 476 209 HOH HOH . H 3 HOH B 77 477 213 HOH HOH . H 3 HOH B 78 478 223 HOH HOH . H 3 HOH B 79 479 225 HOH HOH . H 3 HOH B 80 480 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 2 18.702 -37.45 -18.159 1 40.36 ? PB ADP 302 B 1 HETATM 2 O O1B ADP . . . F 2 18.498 -36.432 -17.089 1 51.07 ? O1B ADP 302 B 1 HETATM 3 O O2B ADP . . . F 2 19.525 -38.64 -17.754 1 52.94 ? O2B ADP 302 B 1 HETATM 4 O O3B ADP . . . F 2 17.462 -37.763 -18.958 1 47.41 ? O3B ADP 302 B 1 HETATM 5 P PA ADP . . . F 2 20.475 -37.251 -20.388 1 32.07 ? PA ADP 302 B 1 HETATM 6 O O1A ADP . . . F 2 20.5 -36.083 -21.335 1 34.42 ? O1A ADP 302 B 1 HETATM 7 O O2A ADP . . . F 2 19.984 -38.599 -20.851 1 34.48 ? O2A ADP 302 B 1 HETATM 8 O O3A ADP . . . F 2 19.637 -36.633 -19.161 1 53.49 ? O3A ADP 302 B 1 HETATM 9 O O5' ADP . . . F 2 21.948 -37.395 -19.752 1 29.72 ? O5' ADP 302 B 1 HETATM 10 C C5' ADP . . . F 2 22.432 -38.612 -19.201 1 29.38 ? C5' ADP 302 B 1 HETATM 11 C C4' ADP . . . F 2 23.956 -38.52 -19.13 1 35.39 ? C4' ADP 302 B 1 HETATM 12 O O4' ADP . . . F 2 24.522 -38.411 -20.448 1 31.31 ? O4' ADP 302 B 1 HETATM 13 C C3' ADP . . . F 2 24.45 -37.293 -18.376 1 32.15 ? C3' ADP 302 B 1 HETATM 14 O O3' ADP . . . F 2 24.528 -37.517 -16.966 1 32.22 ? O3' ADP 302 B 1 HETATM 15 C C2' ADP . . . F 2 25.805 -37.053 -19.008 1 34.58 ? C2' ADP 302 B 1 HETATM 16 O O2' ADP . . . F 2 26.801 -37.906 -18.438 1 32.62 ? O2' ADP 302 B 1 HETATM 17 C C1' ADP . . . F 2 25.615 -37.491 -20.447 1 28.16 ? C1' ADP 302 B 1 HETATM 18 N N9 ADP . . . F 2 25.243 -36.308 -21.257 1 27.61 ? N9 ADP 302 B 1 HETATM 19 C C8 ADP . . . F 2 24.071 -36.124 -21.898 1 32.24 ? C8 ADP 302 B 1 HETATM 20 N N7 ADP . . . F 2 24.04 -34.935 -22.551 1 31.56 ? N7 ADP 302 B 1 HETATM 21 C C5 ADP . . . F 2 25.223 -34.334 -22.338 1 26.12 ? C5 ADP 302 B 1 HETATM 22 C C6 ADP . . . F 2 25.85 -33.058 -22.737 1 24.78 ? C6 ADP 302 B 1 HETATM 23 N N6 ADP . . . F 2 25.201 -32.174 -23.536 1 25.53 ? N6 ADP 302 B 1 HETATM 24 N N1 ADP . . . F 2 27.106 -32.808 -22.283 1 29.87 ? N1 ADP 302 B 1 HETATM 25 C C2 ADP . . . F 2 27.76 -33.685 -21.498 1 25.69 ? C2 ADP 302 B 1 HETATM 26 N N3 ADP . . . F 2 27.252 -34.867 -21.095 1 23.31 ? N3 ADP 302 B 1 HETATM 27 C C4 ADP . . . F 2 26.009 -35.242 -21.478 1 28.76 ? C4 ADP 302 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #