data_4JLJ # _model_server_result.job_id Dfda5kCGitthTMx3BWsxpw _model_server_result.datetime_utc '2024-11-23 01:50:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jlj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4JLJ # _exptl.entry_id 4JLJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.486 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[({2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-1,3-thiazol-4-yl}methyl)sulfanyl]pyrimidine-4,6-diamine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JLJ _cell.length_a 68.998 _cell.length_b 68.998 _cell.length_c 123.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JLJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C17 H18 F N5 O2 S2' _chem_comp.formula_weight 407.486 _chem_comp.id 1NM _chem_comp.mon_nstd_flag . _chem_comp.name 2-[({2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-1,3-thiazol-4-yl}methyl)sulfanyl]pyrimidine-4,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAB C6 1NM sing 1 n n C6 C5 1NM doub 2 n y C6 N1 1NM sing 3 n y C5 C4 1NM sing 4 n y N1 C2 1NM doub 5 n y C4 NAC 1NM sing 6 n n C4 N3 1NM doub 7 n y C2 N3 1NM sing 8 n y C2 SAR 1NM sing 9 n n SAR CAL 1NM sing 10 n n CAL CAV 1NM sing 11 n n FAD CAJ 1NM sing 12 n n CAV NAO 1NM sing 13 n y CAV CAG 1NM doub 14 n y NAO CBA 1NM doub 15 n y CAG SAS 1NM sing 16 n y CAJ CAK 1NM sing 17 n n CBA SAS 1NM sing 18 n y CBA CAW 1NM sing 19 n n CAK OAQ 1NM sing 20 n n CAW CAI 1NM doub 21 n y CAW CAE 1NM sing 22 n y CAI CAZ 1NM sing 23 n y CAZ OAQ 1NM sing 24 n n CAZ CAY 1NM doub 25 n y CAE CAF 1NM doub 26 n y CAY CAF 1NM sing 27 n y CAY OAP 1NM sing 28 n n OAP CAA 1NM sing 29 n n CAJ H1 1NM sing 30 n n CAJ H2 1NM sing 31 n n CAK H3 1NM sing 32 n n CAK H4 1NM sing 33 n n CAI H5 1NM sing 34 n n CAA H6 1NM sing 35 n n CAA H7 1NM sing 36 n n CAA H8 1NM sing 37 n n CAF H9 1NM sing 38 n n CAE H10 1NM sing 39 n n CAG H11 1NM sing 40 n n CAL H12 1NM sing 41 n n CAL H13 1NM sing 42 n n NAB H14 1NM sing 43 n n NAB H15 1NM sing 44 n n C5 H16 1NM sing 45 n n NAC H17 1NM sing 46 n n NAC H18 1NM sing 47 n n # _atom_sites.entry_id 4JLJ _atom_sites.fract_transf_matrix[1][1] 0.014493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1NM A 1 301 301 1NM DRG . D 2 1NM A 1 302 302 1NM DRG . E 3 UDP A 1 303 401 UDP UDP . F 2 1NM B 1 301 301 1NM DRG . G 2 1NM B 1 302 302 1NM DRG . H 3 UDP B 1 303 401 UDP UDP . I 4 HOH A 1 401 2 HOH HOH . I 4 HOH A 2 402 3 HOH HOH . I 4 HOH A 3 403 5 HOH HOH . I 4 HOH A 4 404 6 HOH HOH . I 4 HOH A 5 405 7 HOH HOH . I 4 HOH A 6 406 9 HOH HOH . I 4 HOH A 7 407 14 HOH HOH . I 4 HOH A 8 408 19 HOH HOH . I 4 HOH A 9 409 21 HOH HOH . I 4 HOH A 10 410 22 HOH HOH . I 4 HOH A 11 411 26 HOH HOH . I 4 HOH A 12 412 27 HOH HOH . I 4 HOH A 13 413 32 HOH HOH . I 4 HOH A 14 414 33 HOH HOH . I 4 HOH A 15 415 34 HOH HOH . I 4 HOH A 16 416 37 HOH HOH . I 4 HOH A 17 417 41 HOH HOH . I 4 HOH A 18 418 46 HOH HOH . I 4 HOH A 19 419 47 HOH HOH . I 4 HOH A 20 420 51 HOH HOH . I 4 HOH A 21 421 52 HOH HOH . I 4 HOH A 22 422 53 HOH HOH . I 4 HOH A 23 423 54 HOH HOH . I 4 HOH A 24 424 63 HOH HOH . I 4 HOH A 25 425 64 HOH HOH . I 4 HOH A 26 426 66 HOH HOH . I 4 HOH A 27 427 68 HOH HOH . I 4 HOH A 28 428 69 HOH HOH . I 4 HOH A 29 429 70 HOH HOH . I 4 HOH A 30 430 71 HOH HOH . I 4 HOH A 31 431 72 HOH HOH . I 4 HOH A 32 432 73 HOH HOH . I 4 HOH A 33 433 75 HOH HOH . I 4 HOH A 34 434 76 HOH HOH . I 4 HOH A 35 435 78 HOH HOH . I 4 HOH A 36 436 83 HOH HOH . I 4 HOH A 37 437 84 HOH HOH . I 4 HOH A 38 438 85 HOH HOH . I 4 HOH A 39 439 86 HOH HOH . I 4 HOH A 40 440 87 HOH HOH . I 4 HOH A 41 441 89 HOH HOH . I 4 HOH A 42 442 90 HOH HOH . I 4 HOH A 43 443 91 HOH HOH . I 4 HOH A 44 444 92 HOH HOH . I 4 HOH A 45 445 93 HOH HOH . I 4 HOH A 46 446 94 HOH HOH . I 4 HOH A 47 447 95 HOH HOH . I 4 HOH A 48 448 96 HOH HOH . I 4 HOH A 49 449 97 HOH HOH . I 4 HOH A 50 450 99 HOH HOH . I 4 HOH A 51 451 103 HOH HOH . I 4 HOH A 52 452 104 HOH HOH . I 4 HOH A 53 453 105 HOH HOH . I 4 HOH A 54 454 106 HOH HOH . I 4 HOH A 55 455 107 HOH HOH . I 4 HOH A 56 456 114 HOH HOH . I 4 HOH A 57 457 115 HOH HOH . I 4 HOH A 58 458 116 HOH HOH . I 4 HOH A 59 459 118 HOH HOH . J 4 HOH B 1 401 1 HOH HOH . J 4 HOH B 2 402 4 HOH HOH . J 4 HOH B 3 403 8 HOH HOH . J 4 HOH B 4 404 10 HOH HOH . J 4 HOH B 5 405 11 HOH HOH . J 4 HOH B 6 406 12 HOH HOH . J 4 HOH B 7 407 13 HOH HOH . J 4 HOH B 8 408 15 HOH HOH . J 4 HOH B 9 409 16 HOH HOH . J 4 HOH B 10 410 17 HOH HOH . J 4 HOH B 11 411 18 HOH HOH . J 4 HOH B 12 412 20 HOH HOH . J 4 HOH B 13 413 23 HOH HOH . J 4 HOH B 14 414 24 HOH HOH . J 4 HOH B 15 415 25 HOH HOH . J 4 HOH B 16 416 28 HOH HOH . J 4 HOH B 17 417 29 HOH HOH . J 4 HOH B 18 418 30 HOH HOH . J 4 HOH B 19 419 31 HOH HOH . J 4 HOH B 20 420 35 HOH HOH . J 4 HOH B 21 421 36 HOH HOH . J 4 HOH B 22 422 38 HOH HOH . J 4 HOH B 23 423 39 HOH HOH . J 4 HOH B 24 424 40 HOH HOH . J 4 HOH B 25 425 42 HOH HOH . J 4 HOH B 26 426 43 HOH HOH . J 4 HOH B 27 427 44 HOH HOH . J 4 HOH B 28 428 45 HOH HOH . J 4 HOH B 29 429 48 HOH HOH . J 4 HOH B 30 430 49 HOH HOH . J 4 HOH B 31 431 50 HOH HOH . J 4 HOH B 32 432 55 HOH HOH . J 4 HOH B 33 433 56 HOH HOH . J 4 HOH B 34 434 57 HOH HOH . J 4 HOH B 35 435 58 HOH HOH . J 4 HOH B 36 436 59 HOH HOH . J 4 HOH B 37 437 60 HOH HOH . J 4 HOH B 38 438 61 HOH HOH . J 4 HOH B 39 439 62 HOH HOH . J 4 HOH B 40 440 65 HOH HOH . J 4 HOH B 41 441 67 HOH HOH . J 4 HOH B 42 442 74 HOH HOH . J 4 HOH B 43 443 77 HOH HOH . J 4 HOH B 44 444 79 HOH HOH . J 4 HOH B 45 445 80 HOH HOH . J 4 HOH B 46 446 81 HOH HOH . J 4 HOH B 47 447 82 HOH HOH . J 4 HOH B 48 448 88 HOH HOH . J 4 HOH B 49 449 98 HOH HOH . J 4 HOH B 50 450 100 HOH HOH . J 4 HOH B 51 451 101 HOH HOH . J 4 HOH B 52 452 102 HOH HOH . J 4 HOH B 53 453 108 HOH HOH . J 4 HOH B 54 454 109 HOH HOH . J 4 HOH B 55 455 110 HOH HOH . J 4 HOH B 56 456 111 HOH HOH . J 4 HOH B 57 457 112 HOH HOH . J 4 HOH B 58 458 113 HOH HOH . J 4 HOH B 59 459 117 HOH HOH . J 4 HOH B 60 460 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAD 1NM . . . D 2 -42.049 14.874 -3.544 1 56.07 ? FAD 1NM 302 A 1 HETATM 2 C CAJ 1NM . . . D 2 -41.337 14.091 -2.495 1 61.74 ? CAJ 1NM 302 A 1 HETATM 3 C CAK 1NM . . . D 2 -40.177 14.911 -1.873 1 60.88 ? CAK 1NM 302 A 1 HETATM 4 O OAQ 1NM . . . D 2 -39.729 14.303 -0.63 1 57.95 ? OAQ 1NM 302 A 1 HETATM 5 C CAZ 1NM . . . D 2 -38.419 13.89 -0.652 1 53.87 ? CAZ 1NM 302 A 1 HETATM 6 C CAI 1NM . . . D 2 -37.439 14.585 -1.363 1 54.84 ? CAI 1NM 302 A 1 HETATM 7 C CAY 1NM . . . D 2 -38.083 12.746 0.083 1 53.45 ? CAY 1NM 302 A 1 HETATM 8 O OAP 1NM . . . D 2 -39.096 12.11 0.774 1 53.48 ? OAP 1NM 302 A 1 HETATM 9 C CAA 1NM . . . D 2 -38.747 10.83 1.353 1 49.61 ? CAA 1NM 302 A 1 HETATM 10 C CAF 1NM . . . D 2 -36.755 12.301 0.094 1 51.47 ? CAF 1NM 302 A 1 HETATM 11 C CAE 1NM . . . D 2 -35.776 12.991 -0.626 1 50.56 ? CAE 1NM 302 A 1 HETATM 12 C CAW 1NM . . . D 2 -36.121 14.118 -1.369 1 52.9 ? CAW 1NM 302 A 1 HETATM 13 C CBA 1NM . . . D 2 -35.187 14.805 -2.015 1 49.18 ? CBA 1NM 302 A 1 HETATM 14 N NAO 1NM . . . D 2 -35.411 15.72 -2.944 1 46.54 ? NAO 1NM 302 A 1 HETATM 15 S SAS 1NM . . . D 2 -33.581 14.739 -1.688 1 51.6 ? SAS 1NM 302 A 1 HETATM 16 C CAG 1NM . . . D 2 -33.14 15.877 -2.815 1 48.42 ? CAG 1NM 302 A 1 HETATM 17 C CAV 1NM . . . D 2 -34.276 16.292 -3.386 1 50.03 ? CAV 1NM 302 A 1 HETATM 18 C CAL 1NM . . . D 2 -34.283 17.367 -4.475 1 49.26 ? CAL 1NM 302 A 1 HETATM 19 S SAR 1NM . . . D 2 -33.921 16.706 -6.148 1 45.18 ? SAR 1NM 302 A 1 HETATM 20 C C2 1NM . . . D 2 -33.395 18.116 -7.095 1 48.92 ? C2 1NM 302 A 1 HETATM 21 N N3 1NM . . . D 2 -32.711 19.091 -6.468 1 50.7 ? N3 1NM 302 A 1 HETATM 22 N N1 1NM . . . D 2 -33.683 18.224 -8.422 1 45.39 ? N1 1NM 302 A 1 HETATM 23 C C6 1NM . . . D 2 -33.274 19.31 -9.132 1 48.5 ? C6 1NM 302 A 1 HETATM 24 N NAB 1NM . . . D 2 -33.532 19.426 -10.438 1 44.01 ? NAB 1NM 302 A 1 HETATM 25 C C5 1NM . . . D 2 -32.563 20.325 -8.499 1 46.44 ? C5 1NM 302 A 1 HETATM 26 C C4 1NM . . . D 2 -32.291 20.182 -7.14 1 47.79 ? C4 1NM 302 A 1 HETATM 27 N NAC 1NM . . . D 2 -31.633 21.127 -6.484 1 48.89 ? NAC 1NM 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #