data_4JLM # _model_server_result.job_id L0N579BbAm0XgvFlZLLhEg _model_server_result.datetime_utc '2024-11-26 16:54:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4JLM # _exptl.entry_id 4JLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.539 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[({5-ethyl-2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-1,3-thiazol-4-yl}methyl)sulfanyl]pyrimidine-4,6-diamine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JLM _cell.length_a 68.516 _cell.length_b 68.516 _cell.length_c 121.285 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C19 H22 F N5 O2 S2' _chem_comp.formula_weight 435.539 _chem_comp.id 1NN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[({5-ethyl-2-[3-(2-fluoroethoxy)-4-methoxyphenyl]-1,3-thiazol-4-yl}methyl)sulfanyl]pyrimidine-4,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAA 1NN sing 1 n n CAK CBB 1NN sing 2 n n SAT CBB 1NN sing 3 n y SAT CBC 1NN sing 4 n y CBB CBA 1NN doub 5 n y NAC C6 1NN sing 6 n n CAF CAG 1NN doub 7 n y CAF CAW 1NN sing 8 n y C6 C5 1NN doub 9 n y C6 N1 1NN sing 10 n y C5 C4 1NN sing 11 n y CAG CAY 1NN sing 12 n y N1 C2 1NN doub 13 n y CBC CAW 1NN sing 14 n n CBC NAP 1NN doub 15 n y C4 NAD 1NN sing 16 n n C4 N3 1NN doub 17 n y CBA NAP 1NN sing 18 n y CBA CAM 1NN sing 19 n n C2 N3 1NN sing 20 n y C2 SAS 1NN sing 21 n n CAW CAI 1NN doub 22 n y CAB OAQ 1NN sing 23 n n SAS CAM 1NN sing 24 n n CAY OAQ 1NN sing 25 n n CAY CAZ 1NN doub 26 n y CAI CAZ 1NN sing 27 n y CAZ OAR 1NN sing 28 n n OAR CAL 1NN sing 29 n n CAL CAJ 1NN sing 30 n n CAJ FAE 1NN sing 31 n n CAJ H1 1NN sing 32 n n CAJ H2 1NN sing 33 n n CAL H3 1NN sing 34 n n CAL H4 1NN sing 35 n n CAI H5 1NN sing 36 n n CAB H6 1NN sing 37 n n CAB H7 1NN sing 38 n n CAB H8 1NN sing 39 n n CAG H9 1NN sing 40 n n CAF H10 1NN sing 41 n n CAK H11 1NN sing 42 n n CAK H12 1NN sing 43 n n CAA H13 1NN sing 44 n n CAA H14 1NN sing 45 n n CAA H15 1NN sing 46 n n CAM H16 1NN sing 47 n n CAM H17 1NN sing 48 n n NAC H18 1NN sing 49 n n NAC H19 1NN sing 50 n n C5 H20 1NN sing 51 n n NAD H21 1NN sing 52 n n NAD H22 1NN sing 53 n n # _atom_sites.entry_id 4JLM _atom_sites.fract_transf_matrix[1][1] 0.014595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1NN A 1 301 301 1NN 1NN . D 2 1NN A 1 302 302 1NN 1NN . E 3 UDP A 1 303 401 UDP UDP . F 2 1NN B 1 301 301 1NN 1NN . G 3 UDP B 1 302 401 UDP UDP . H 4 HOH A 1 401 2 HOH HOH . H 4 HOH A 2 402 3 HOH HOH . H 4 HOH A 3 403 5 HOH HOH . H 4 HOH A 4 404 6 HOH HOH . H 4 HOH A 5 405 7 HOH HOH . H 4 HOH A 6 406 9 HOH HOH . H 4 HOH A 7 407 14 HOH HOH . H 4 HOH A 8 408 19 HOH HOH . H 4 HOH A 9 409 21 HOH HOH . H 4 HOH A 10 410 26 HOH HOH . H 4 HOH A 11 411 27 HOH HOH . H 4 HOH A 12 412 32 HOH HOH . H 4 HOH A 13 413 33 HOH HOH . H 4 HOH A 14 414 34 HOH HOH . H 4 HOH A 15 415 37 HOH HOH . H 4 HOH A 16 416 41 HOH HOH . H 4 HOH A 17 417 46 HOH HOH . H 4 HOH A 18 418 47 HOH HOH . H 4 HOH A 19 419 51 HOH HOH . H 4 HOH A 20 420 52 HOH HOH . H 4 HOH A 21 421 53 HOH HOH . H 4 HOH A 22 422 54 HOH HOH . H 4 HOH A 23 423 63 HOH HOH . H 4 HOH A 24 424 64 HOH HOH . H 4 HOH A 25 425 66 HOH HOH . H 4 HOH A 26 426 68 HOH HOH . H 4 HOH A 27 427 69 HOH HOH . H 4 HOH A 28 428 71 HOH HOH . H 4 HOH A 29 429 72 HOH HOH . H 4 HOH A 30 430 73 HOH HOH . H 4 HOH A 31 431 75 HOH HOH . H 4 HOH A 32 432 78 HOH HOH . H 4 HOH A 33 433 83 HOH HOH . H 4 HOH A 34 434 84 HOH HOH . H 4 HOH A 35 435 86 HOH HOH . H 4 HOH A 36 436 87 HOH HOH . H 4 HOH A 37 437 89 HOH HOH . H 4 HOH A 38 438 91 HOH HOH . H 4 HOH A 39 439 92 HOH HOH . H 4 HOH A 40 440 93 HOH HOH . H 4 HOH A 41 441 94 HOH HOH . H 4 HOH A 42 442 95 HOH HOH . H 4 HOH A 43 443 96 HOH HOH . H 4 HOH A 44 444 97 HOH HOH . H 4 HOH A 45 445 99 HOH HOH . H 4 HOH A 46 446 103 HOH HOH . H 4 HOH A 47 447 106 HOH HOH . H 4 HOH A 48 448 107 HOH HOH . H 4 HOH A 49 449 114 HOH HOH . H 4 HOH A 50 450 116 HOH HOH . H 4 HOH A 51 451 118 HOH HOH . H 4 HOH A 52 452 120 HOH HOH . H 4 HOH A 53 453 121 HOH HOH . H 4 HOH A 54 454 123 HOH HOH . H 4 HOH A 55 455 124 HOH HOH . H 4 HOH A 56 456 131 HOH HOH . H 4 HOH A 57 457 132 HOH HOH . I 4 HOH B 1 401 1 HOH HOH . I 4 HOH B 2 402 4 HOH HOH . I 4 HOH B 3 403 10 HOH HOH . I 4 HOH B 4 404 11 HOH HOH . I 4 HOH B 5 405 12 HOH HOH . I 4 HOH B 6 406 15 HOH HOH . I 4 HOH B 7 407 16 HOH HOH . I 4 HOH B 8 408 17 HOH HOH . I 4 HOH B 9 409 18 HOH HOH . I 4 HOH B 10 410 20 HOH HOH . I 4 HOH B 11 411 24 HOH HOH . I 4 HOH B 12 412 30 HOH HOH . I 4 HOH B 13 413 31 HOH HOH . I 4 HOH B 14 414 35 HOH HOH . I 4 HOH B 15 415 36 HOH HOH . I 4 HOH B 16 416 38 HOH HOH . I 4 HOH B 17 417 39 HOH HOH . I 4 HOH B 18 418 40 HOH HOH . I 4 HOH B 19 419 42 HOH HOH . I 4 HOH B 20 420 43 HOH HOH . I 4 HOH B 21 421 44 HOH HOH . I 4 HOH B 22 422 45 HOH HOH . I 4 HOH B 23 423 48 HOH HOH . I 4 HOH B 24 424 49 HOH HOH . I 4 HOH B 25 425 50 HOH HOH . I 4 HOH B 26 426 55 HOH HOH . I 4 HOH B 27 427 56 HOH HOH . I 4 HOH B 28 428 57 HOH HOH . I 4 HOH B 29 429 59 HOH HOH . I 4 HOH B 30 430 60 HOH HOH . I 4 HOH B 31 431 61 HOH HOH . I 4 HOH B 32 432 62 HOH HOH . I 4 HOH B 33 433 67 HOH HOH . I 4 HOH B 34 434 77 HOH HOH . I 4 HOH B 35 435 79 HOH HOH . I 4 HOH B 36 436 80 HOH HOH . I 4 HOH B 37 437 81 HOH HOH . I 4 HOH B 38 438 82 HOH HOH . I 4 HOH B 39 439 90 HOH HOH . I 4 HOH B 40 440 98 HOH HOH . I 4 HOH B 41 441 100 HOH HOH . I 4 HOH B 42 442 101 HOH HOH . I 4 HOH B 43 443 102 HOH HOH . I 4 HOH B 44 444 108 HOH HOH . I 4 HOH B 45 445 109 HOH HOH . I 4 HOH B 46 446 110 HOH HOH . I 4 HOH B 47 447 111 HOH HOH . I 4 HOH B 48 448 112 HOH HOH . I 4 HOH B 49 449 113 HOH HOH . I 4 HOH B 50 450 119 HOH HOH . I 4 HOH B 51 451 125 HOH HOH . I 4 HOH B 52 452 126 HOH HOH . I 4 HOH B 53 453 127 HOH HOH . I 4 HOH B 54 454 128 HOH HOH . I 4 HOH B 55 455 129 HOH HOH . I 4 HOH B 56 456 130 HOH HOH . I 4 HOH B 57 457 133 HOH HOH . I 4 HOH B 58 458 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAE 1NN . . . D 2 -41.14 14.757 -3.562 0.5 44.92 ? FAE 1NN 302 A 1 HETATM 2 C CAJ 1NN . . . D 2 -39.829 14.736 -3.091 0.5 39.55 ? CAJ 1NN 302 A 1 HETATM 3 C CAL 1NN . . . D 2 -39.81 15.291 -1.67 0.5 42.05 ? CAL 1NN 302 A 1 HETATM 4 O OAR 1NN . . . D 2 -39.487 14.242 -0.747 0.5 39.9 ? OAR 1NN 302 A 1 HETATM 5 C CAZ 1NN . . . D 2 -38.157 13.952 -0.791 0.5 38.09 ? CAZ 1NN 302 A 1 HETATM 6 C CAI 1NN . . . D 2 -37.244 14.748 -1.45 0.5 36.39 ? CAI 1NN 302 A 1 HETATM 7 C CAY 1NN . . . D 2 -37.759 12.802 -0.14 0.5 38.14 ? CAY 1NN 302 A 1 HETATM 8 O OAQ 1NN . . . D 2 -38.738 12.063 0.485 0.5 36.79 ? OAQ 1NN 302 A 1 HETATM 9 C CAB 1NN . . . D 2 -38.164 10.909 1.109 0.5 38.15 ? CAB 1NN 302 A 1 HETATM 10 C CAG 1NN . . . D 2 -36.418 12.463 -0.14 0.5 39.56 ? CAG 1NN 302 A 1 HETATM 11 C CAF 1NN . . . D 2 -35.482 13.268 -0.799 0.5 36.96 ? CAF 1NN 302 A 1 HETATM 12 C CAW 1NN . . . D 2 -35.907 14.402 -1.467 0.5 37.09 ? CAW 1NN 302 A 1 HETATM 13 C CBC 1NN . . . D 2 -35.027 15.186 -2.066 0.5 34.91 ? CBC 1NN 302 A 1 HETATM 14 N NAP 1NN . . . D 2 -35.309 16.196 -2.877 0.5 38.34 ? NAP 1NN 302 A 1 HETATM 15 S SAT 1NN . . . D 2 -33.509 15.098 -1.862 0.5 40.74 ? SAT 1NN 302 A 1 HETATM 16 C CBB 1NN . . . D 2 -33.108 16.279 -2.766 0.5 39.76 ? CBB 1NN 302 A 1 HETATM 17 C CAK 1NN . . . D 2 -31.692 16.728 -3.017 0.5 42.37 ? CAK 1NN 302 A 1 HETATM 18 C CAA 1NN . . . D 2 -31.045 16.818 -1.65 0.5 44.8 ? CAA 1NN 302 A 1 HETATM 19 C CBA 1NN . . . D 2 -34.195 16.822 -3.279 0.5 37.33 ? CBA 1NN 302 A 1 HETATM 20 C CAM 1NN . . . D 2 -34.152 17.974 -4.255 0.5 35 ? CAM 1NN 302 A 1 HETATM 21 S SAS 1NN . . . D 2 -34.283 17.341 -5.988 0.5 39.63 ? SAS 1NN 302 A 1 HETATM 22 C C2 1NN . . . D 2 -33.499 18.489 -6.94 0.5 32.63 ? C2 1NN 302 A 1 HETATM 23 N N3 1NN . . . D 2 -32.796 19.472 -6.369 0.5 29.15 ? N3 1NN 302 A 1 HETATM 24 N N1 1NN . . . D 2 -33.586 18.358 -8.272 0.5 31.25 ? N1 1NN 302 A 1 HETATM 25 C C6 1NN . . . D 2 -32.965 19.211 -9.065 0.5 30.17 ? C6 1NN 302 A 1 HETATM 26 N NAC 1NN . . . D 2 -33.077 19.084 -10.387 0.5 32.99 ? NAC 1NN 302 A 1 HETATM 27 C C5 1NN . . . D 2 -32.233 20.254 -8.52 0.5 27.99 ? C5 1NN 302 A 1 HETATM 28 C C4 1NN . . . D 2 -32.161 20.361 -7.154 0.5 27.36 ? C4 1NN 302 A 1 HETATM 29 N NAD 1NN . . . D 2 -31.457 21.338 -6.616 0.5 25.44 ? NAD 1NN 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 29 #