data_4JLR # _model_server_result.job_id SVJmtsYOjwH31ADj1gVlHQ _model_server_result.datetime_utc '2024-12-23 18:50:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 4JLR # _exptl.entry_id 4JLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JLR _cell.length_a 149.159 _cell.length_b 158.511 _cell.length_c 116.049 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,H,I,J 1 1 D,E,F,G,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf2 A SG CYS 147 H CYS 140 1_555 A SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? disulf ? disulf4 B SG CYS 133 L CYS 134 1_555 B SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 D SG CYS 22 A CYS 22 1_555 D SG CYS 97 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf6 D SG CYS 147 A CYS 140 1_555 D SG CYS 203 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 E SG CYS 23 B CYS 23 1_555 E SG CYS 87 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf8 E SG CYS 133 B CYS 134 1_555 E SG CYS 193 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4JLR _atom_sites.fract_transf_matrix[1][1] 0.006704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 1PE A 1 301 1 1PE 1PE . H 5 HOH H 1 301 10 HOH HOH . H 5 HOH H 2 302 14 HOH HOH . H 5 HOH H 3 303 16 HOH HOH . H 5 HOH H 4 304 19 HOH HOH . H 5 HOH H 5 305 24 HOH HOH . H 5 HOH H 6 306 25 HOH HOH . H 5 HOH H 7 307 26 HOH HOH . H 5 HOH H 8 308 27 HOH HOH . H 5 HOH H 9 309 33 HOH HOH . H 5 HOH H 10 310 34 HOH HOH . H 5 HOH H 11 311 35 HOH HOH . H 5 HOH H 12 312 42 HOH HOH . H 5 HOH H 13 313 57 HOH HOH . H 5 HOH H 14 314 58 HOH HOH . H 5 HOH H 15 315 59 HOH HOH . H 5 HOH H 16 316 60 HOH HOH . H 5 HOH H 17 317 62 HOH HOH . H 5 HOH H 18 318 67 HOH HOH . H 5 HOH H 19 319 68 HOH HOH . H 5 HOH H 20 320 77 HOH HOH . H 5 HOH H 21 321 80 HOH HOH . H 5 HOH H 22 322 81 HOH HOH . H 5 HOH H 23 323 86 HOH HOH . H 5 HOH H 24 324 88 HOH HOH . H 5 HOH H 25 325 90 HOH HOH . I 5 HOH L 1 301 1 HOH HOH . I 5 HOH L 2 302 17 HOH HOH . I 5 HOH L 3 303 29 HOH HOH . I 5 HOH L 4 304 30 HOH HOH . I 5 HOH L 5 305 31 HOH HOH . I 5 HOH L 6 306 32 HOH HOH . I 5 HOH L 7 307 37 HOH HOH . I 5 HOH L 8 308 38 HOH HOH . I 5 HOH L 9 309 50 HOH HOH . I 5 HOH L 10 310 54 HOH HOH . I 5 HOH L 11 311 55 HOH HOH . I 5 HOH L 12 312 61 HOH HOH . I 5 HOH L 13 313 63 HOH HOH . I 5 HOH L 14 314 69 HOH HOH . I 5 HOH L 15 315 70 HOH HOH . I 5 HOH L 16 316 71 HOH HOH . I 5 HOH L 17 317 72 HOH HOH . I 5 HOH L 18 318 83 HOH HOH . I 5 HOH L 19 319 84 HOH HOH . I 5 HOH L 20 320 92 HOH HOH . I 5 HOH L 21 321 98 HOH HOH . J 5 HOH S 1 201 4 HOH HOH . J 5 HOH S 2 202 9 HOH HOH . J 5 HOH S 3 203 13 HOH HOH . J 5 HOH S 4 204 91 HOH HOH . K 5 HOH A 1 401 2 HOH HOH . K 5 HOH A 2 402 3 HOH HOH . K 5 HOH A 3 403 5 HOH HOH . K 5 HOH A 4 404 8 HOH HOH . K 5 HOH A 5 405 12 HOH HOH . K 5 HOH A 6 406 18 HOH HOH . K 5 HOH A 7 407 20 HOH HOH . K 5 HOH A 8 408 21 HOH HOH . K 5 HOH A 9 409 22 HOH HOH . K 5 HOH A 10 410 36 HOH HOH . K 5 HOH A 11 411 39 HOH HOH . K 5 HOH A 12 412 40 HOH HOH . K 5 HOH A 13 413 41 HOH HOH . K 5 HOH A 14 414 43 HOH HOH . K 5 HOH A 15 415 44 HOH HOH . K 5 HOH A 16 416 45 HOH HOH . K 5 HOH A 17 417 46 HOH HOH . K 5 HOH A 18 418 47 HOH HOH . K 5 HOH A 19 419 48 HOH HOH . K 5 HOH A 20 420 49 HOH HOH . K 5 HOH A 21 421 53 HOH HOH . K 5 HOH A 22 422 64 HOH HOH . K 5 HOH A 23 423 65 HOH HOH . K 5 HOH A 24 424 66 HOH HOH . K 5 HOH A 25 425 73 HOH HOH . K 5 HOH A 26 426 74 HOH HOH . K 5 HOH A 27 427 75 HOH HOH . K 5 HOH A 28 428 78 HOH HOH . K 5 HOH A 29 429 79 HOH HOH . K 5 HOH A 30 430 82 HOH HOH . K 5 HOH A 31 431 87 HOH HOH . K 5 HOH A 32 432 89 HOH HOH . K 5 HOH A 33 433 93 HOH HOH . K 5 HOH A 34 434 94 HOH HOH . K 5 HOH A 35 435 95 HOH HOH . K 5 HOH A 36 436 96 HOH HOH . K 5 HOH A 37 437 97 HOH HOH . L 5 HOH B 1 301 6 HOH HOH . L 5 HOH B 2 302 7 HOH HOH . L 5 HOH B 3 303 11 HOH HOH . L 5 HOH B 4 304 23 HOH HOH . L 5 HOH B 5 305 28 HOH HOH . L 5 HOH B 6 306 51 HOH HOH . L 5 HOH B 7 307 52 HOH HOH . L 5 HOH B 8 308 56 HOH HOH . L 5 HOH B 9 309 76 HOH HOH . L 5 HOH B 10 310 85 HOH HOH . M 5 HOH C 1 201 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 1PE . . . G 4 42.625 39.813 15.849 1 70.77 ? C13 1PE 301 A 1 HETATM 2 C C23 1PE . . . G 4 41.731 40.846 15.153 1 66.84 ? C23 1PE 301 A 1 HETATM 3 O OH4 1PE . . . G 4 42.586 39.913 17.292 1 71.92 ? OH4 1PE 301 A 1 HETATM 4 C C14 1PE . . . G 4 42.185 38.164 18.984 1 72.86 ? C14 1PE 301 A 1 HETATM 5 C C24 1PE . . . G 4 43.159 38.787 17.981 1 68.16 ? C24 1PE 301 A 1 HETATM 6 O OH5 1PE . . . G 4 42.473 36.774 19.236 1 75.39 ? OH5 1PE 301 A 1 HETATM 7 C C15 1PE . . . G 4 41.588 34.505 19.094 1 78.73 ? C15 1PE 301 A 1 HETATM 8 C C25 1PE . . . G 4 41.778 35.848 18.382 1 80.67 ? C25 1PE 301 A 1 HETATM 9 O OH6 1PE . . . G 4 41.007 33.518 18.226 1 82.31 ? OH6 1PE 301 A 1 HETATM 10 C C16 1PE . . . G 4 41.314 32.476 16.031 1 78.05 ? C16 1PE 301 A 1 HETATM 11 C C26 1PE . . . G 4 41.95 32.842 17.373 1 81.18 ? C26 1PE 301 A 1 HETATM 12 O OH7 1PE . . . G 4 42.145 32.919 14.942 1 74.32 ? OH7 1PE 301 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #