data_4JLX # _model_server_result.job_id UrpdFCfKHi8hMpvivBYPrg _model_server_result.datetime_utc '2024-10-18 17:20:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jlx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4JLX # _exptl.entry_id 4JLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JLX _cell.length_a 47.402 _cell.length_b 118.014 _cell.length_c 142.599 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 236 A HIS 367 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A SG CYS 242 A CYS 373 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A SG CYS 243 A CYS 374 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 A SG CYS 250 A CYS 381 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4JLX _atom_sites.fract_transf_matrix[1][1] 0.021096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 3 MLI A 1 502 1 MLI MLI . D 4 GOL A 1 503 1 GOL GOL . E 3 MLI A 1 504 1 MLI MLI . F 5 PG4 A 1 505 1 PG4 PG4 . G 3 MLI A 1 507 1 MLI MLI . H 5 PG4 A 1 506 2 PG4 PG4 . I 6 HOH A 1 601 1 HOH HOH . I 6 HOH A 2 602 2 HOH HOH . I 6 HOH A 3 603 3 HOH HOH . I 6 HOH A 4 604 4 HOH HOH . I 6 HOH A 5 605 5 HOH HOH . I 6 HOH A 6 606 6 HOH HOH . I 6 HOH A 7 607 7 HOH HOH . I 6 HOH A 8 608 8 HOH HOH . I 6 HOH A 9 609 9 HOH HOH . I 6 HOH A 10 610 10 HOH HOH . I 6 HOH A 11 611 11 HOH HOH . I 6 HOH A 12 612 12 HOH HOH . I 6 HOH A 13 613 14 HOH HOH . I 6 HOH A 14 614 15 HOH HOH . I 6 HOH A 15 615 16 HOH HOH . I 6 HOH A 16 616 17 HOH HOH . I 6 HOH A 17 617 18 HOH HOH . I 6 HOH A 18 618 19 HOH HOH . I 6 HOH A 19 619 20 HOH HOH . I 6 HOH A 20 620 21 HOH HOH . I 6 HOH A 21 621 22 HOH HOH . I 6 HOH A 22 622 23 HOH HOH . I 6 HOH A 23 623 24 HOH HOH . I 6 HOH A 24 624 25 HOH HOH . I 6 HOH A 25 625 26 HOH HOH . I 6 HOH A 26 626 27 HOH HOH . I 6 HOH A 27 627 28 HOH HOH . I 6 HOH A 28 628 29 HOH HOH . I 6 HOH A 29 629 30 HOH HOH . I 6 HOH A 30 630 31 HOH HOH . I 6 HOH A 31 631 32 HOH HOH . I 6 HOH A 32 632 33 HOH HOH . I 6 HOH A 33 633 34 HOH HOH . I 6 HOH A 34 634 35 HOH HOH . I 6 HOH A 35 635 36 HOH HOH . I 6 HOH A 36 636 37 HOH HOH . I 6 HOH A 37 637 38 HOH HOH . I 6 HOH A 38 638 39 HOH HOH . I 6 HOH A 39 639 40 HOH HOH . I 6 HOH A 40 640 41 HOH HOH . I 6 HOH A 41 641 42 HOH HOH . I 6 HOH A 42 642 43 HOH HOH . I 6 HOH A 43 643 44 HOH HOH . I 6 HOH A 44 644 45 HOH HOH . I 6 HOH A 45 645 46 HOH HOH . I 6 HOH A 46 646 47 HOH HOH . I 6 HOH A 47 647 48 HOH HOH . I 6 HOH A 48 648 49 HOH HOH . I 6 HOH A 49 649 50 HOH HOH . I 6 HOH A 50 650 51 HOH HOH . I 6 HOH A 51 651 52 HOH HOH . I 6 HOH A 52 652 53 HOH HOH . I 6 HOH A 53 653 54 HOH HOH . I 6 HOH A 54 654 55 HOH HOH . I 6 HOH A 55 655 56 HOH HOH . I 6 HOH A 56 656 57 HOH HOH . I 6 HOH A 57 657 58 HOH HOH . I 6 HOH A 58 658 59 HOH HOH . I 6 HOH A 59 659 60 HOH HOH . I 6 HOH A 60 660 62 HOH HOH . I 6 HOH A 61 661 63 HOH HOH . I 6 HOH A 62 662 64 HOH HOH . I 6 HOH A 63 663 65 HOH HOH . I 6 HOH A 64 664 66 HOH HOH . I 6 HOH A 65 665 67 HOH HOH . I 6 HOH A 66 666 68 HOH HOH . I 6 HOH A 67 667 69 HOH HOH . I 6 HOH A 68 668 70 HOH HOH . I 6 HOH A 69 669 71 HOH HOH . I 6 HOH A 70 670 72 HOH HOH . I 6 HOH A 71 671 73 HOH HOH . I 6 HOH A 72 672 74 HOH HOH . I 6 HOH A 73 673 75 HOH HOH . I 6 HOH A 74 674 76 HOH HOH . I 6 HOH A 75 675 77 HOH HOH . I 6 HOH A 76 676 78 HOH HOH . I 6 HOH A 77 677 79 HOH HOH . I 6 HOH A 78 678 80 HOH HOH . I 6 HOH A 79 679 81 HOH HOH . I 6 HOH A 80 680 82 HOH HOH . I 6 HOH A 81 681 83 HOH HOH . I 6 HOH A 82 682 84 HOH HOH . I 6 HOH A 83 683 85 HOH HOH . I 6 HOH A 84 684 86 HOH HOH . I 6 HOH A 85 685 87 HOH HOH . I 6 HOH A 86 686 88 HOH HOH . I 6 HOH A 87 687 89 HOH HOH . I 6 HOH A 88 688 90 HOH HOH . I 6 HOH A 89 689 91 HOH HOH . I 6 HOH A 90 690 92 HOH HOH . I 6 HOH A 91 691 93 HOH HOH . I 6 HOH A 92 692 94 HOH HOH . I 6 HOH A 93 693 95 HOH HOH . I 6 HOH A 94 694 96 HOH HOH . I 6 HOH A 95 695 97 HOH HOH . I 6 HOH A 96 696 98 HOH HOH . I 6 HOH A 97 697 99 HOH HOH . I 6 HOH A 98 698 100 HOH HOH . I 6 HOH A 99 699 101 HOH HOH . I 6 HOH A 100 700 103 HOH HOH . I 6 HOH A 101 701 104 HOH HOH . I 6 HOH A 102 702 105 HOH HOH . I 6 HOH A 103 703 107 HOH HOH . I 6 HOH A 104 704 108 HOH HOH . I 6 HOH A 105 705 109 HOH HOH . I 6 HOH A 106 706 110 HOH HOH . I 6 HOH A 107 707 112 HOH HOH . I 6 HOH A 108 708 113 HOH HOH . I 6 HOH A 109 709 114 HOH HOH . I 6 HOH A 110 710 115 HOH HOH . I 6 HOH A 111 711 116 HOH HOH . I 6 HOH A 112 712 117 HOH HOH . I 6 HOH A 113 713 119 HOH HOH . I 6 HOH A 114 714 120 HOH HOH . I 6 HOH A 115 715 121 HOH HOH . I 6 HOH A 116 716 122 HOH HOH . I 6 HOH A 117 717 123 HOH HOH . I 6 HOH A 118 718 124 HOH HOH . I 6 HOH A 119 719 125 HOH HOH . I 6 HOH A 120 720 126 HOH HOH . I 6 HOH A 121 721 127 HOH HOH . I 6 HOH A 122 722 128 HOH HOH . I 6 HOH A 123 723 129 HOH HOH . I 6 HOH A 124 724 130 HOH HOH . I 6 HOH A 125 725 131 HOH HOH . I 6 HOH A 126 726 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 25.924 -5.524 -36.665 1 95.53 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 4 25.042 -4.911 -37.56 1 87.42 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 4 25.798 -5.128 -35.192 1 94.25 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 4 24.529 -4.671 -34.841 1 89.4 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 4 26.387 -6.113 -34.194 1 90.28 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 4 26.41 -5.717 -32.843 1 93.2 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #