data_4JM2 # _model_server_result.job_id loukfjEjf4yA4FxhoqdgNQ _model_server_result.datetime_utc '2025-01-02 22:57:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 4JM2 # _exptl.entry_id 4JM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.75 _cell.angle_gamma 90 _cell.entry_id 4JM2 _cell.length_a 218.409 _cell.length_b 92.146 _cell.length_c 88.187 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 7 oligosaccharide 8 oligosaccharide 9 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 7 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 7 6 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 7 7 6 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 7 8 6 MAN MAN C1 O1 . O6 HO6 . sing 8 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 10 ? 8 4 3 MAN BMA C1 O1 . O3 HO3 . sing 11 ? 8 5 4 MAN MAN C1 O1 . O2 HO2 . sing 12 ? 8 6 5 MAN MAN C1 O1 . O2 HO2 . sing 13 ? 8 7 3 MAN BMA C1 O1 . O6 HO6 . sing 14 ? 8 8 7 MAN MAN C1 O1 . O6 HO6 . sing 15 ? 8 9 8 MAN MAN C1 O1 . O2 HO2 . sing 16 ? 8 10 7 MAN MAN C1 O1 . O3 HO3 . sing 17 ? 9 2 1 NAG NAG C1 O1 . O4 HO4 . sing 18 ? 9 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 7 n G NAG 1 G 1 NAG G 1 NAG 7 n G NAG 2 G 2 NAG G 2 NAG 7 n G BMA 3 G 3 BMA G 3 BMA 7 n G MAN 4 G 4 MAN G 9 MAN 7 n G MAN 5 G 5 MAN G 10 MAN 7 n G MAN 6 G 6 MAN G 4 MAN 7 n G MAN 7 G 7 MAN G 7 MAN 7 n G MAN 8 G 8 MAN G 5 MAN 8 n H NAG 1 H 1 NAG H 1 NAG 8 n H NAG 2 H 2 NAG H 2 NAG 8 n H BMA 3 H 3 BMA H 3 BMA 8 n H MAN 4 H 4 MAN H 9 MAN 8 n H MAN 5 H 5 MAN H 10 MAN 8 n H MAN 6 H 6 MAN H 11 MAN 8 n H MAN 7 H 7 MAN H 4 MAN 8 n H MAN 8 H 8 MAN H 5 MAN 8 n H MAN 9 H 9 MAN H 6 MAN 8 n H MAN 10 H 10 MAN H 7 MAN 9 n I NAG 1 I 1 NAG I 1 NAG 9 n I NAG 2 I 2 NAG I 2 NAG 9 n I BMA 3 I 3 BMA I 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 102 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 160 A CYS 140 1_555 A SG CYS 216 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 C SG CYS 136 C CYS 134 1_555 C SG CYS 196 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? disulf ? disulf7 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 D SG CYS 155 D CYS 140 1_555 D SG CYS 211 D CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf9 E SG CYS 31 E CYS 119 1_555 E SG CYS 53 E CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 E SG CYS 38 E CYS 126 1_555 E SG CYS 44 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 E SG CYS 66 E CYS 218 1_555 E SG CYS 95 E CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 E SG CYS 76 E CYS 228 1_555 E SG CYS 87 E CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? disulf ? disulf13 E SG CYS 144 E CYS 296 1_555 E SG CYS 165 E CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf14 E SG CYS 211 E CYS 378 1_555 E SG CYS 274 E CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 E SG CYS 218 E CYS 385 1_555 E SG CYS 247 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf16 F SG CYS 16 F CYS 16 1_555 F SG CYS 84 F CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf17 F SG CYS 130 F CYS 130 1_555 F SG CYS 159 F CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 E ND2 ASN 110 E ASN 262 1_555 K C1 NAG . E NAG 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 E ND2 ASN 124 E ASN 276 1_555 O C1 NAG . E NAG 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 E ND2 ASN 143 E ASN 295 1_555 P C1 NAG . E NAG 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 E ND2 ASN 166 E ASN 332 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.525 ? covale ? covale5 E ND2 ASN 173 E ASN 339 1_555 N C1 NAG . E NAG 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 E ND2 ASN 195 E ASN 362 1_555 L C1 NAG . E NAG 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 E ND2 ASN 219 E ASN 386 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale8 E ND2 ASN 225 E ASN 392 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale9 E ND2 ASN 277 E ASN 448 1_555 M C1 NAG . E NAG 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale11 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale12 G O3 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale13 G O6 BMA . G BMA 3 1_555 G C1 MAN . G MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 G O2 MAN . G MAN 4 1_555 G C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale15 G O3 MAN . G MAN 6 1_555 G C1 MAN . G MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale16 G O6 MAN . G MAN 6 1_555 G C1 MAN . G MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale17 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? covale ? covale18 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.252 ? covale ? covale19 H O3 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale20 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale21 H O2 MAN . H MAN 4 1_555 H C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale22 H O2 MAN . H MAN 5 1_555 H C1 MAN . H MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale23 H O6 MAN . H MAN 7 1_555 H C1 MAN . H MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale24 H O3 MAN . H MAN 7 1_555 H C1 MAN . H MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale25 H O2 MAN . H MAN 8 1_555 H C1 MAN . H MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale26 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale27 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 315 n n O1 HO1 PG4 sing 316 n n C1 C2 PG4 sing 317 n n C1 H11 PG4 sing 318 n n C1 H12 PG4 sing 319 n n C2 O2 PG4 sing 320 n n C2 H21 PG4 sing 321 n n C2 H22 PG4 sing 322 n n O2 C3 PG4 sing 323 n n C3 C4 PG4 sing 324 n n C3 H31 PG4 sing 325 n n C3 H32 PG4 sing 326 n n C4 O3 PG4 sing 327 n n C4 H41 PG4 sing 328 n n C4 H42 PG4 sing 329 n n O3 C5 PG4 sing 330 n n C5 C6 PG4 sing 331 n n C5 H51 PG4 sing 332 n n C5 H52 PG4 sing 333 n n C6 O4 PG4 sing 334 n n C6 H61 PG4 sing 335 n n C6 H62 PG4 sing 336 n n O4 C7 PG4 sing 337 n n C7 C8 PG4 sing 338 n n C7 H71 PG4 sing 339 n n C7 H72 PG4 sing 340 n n C8 O5 PG4 sing 341 n n C8 H81 PG4 sing 342 n n C8 H82 PG4 sing 343 n n O5 HO5 PG4 sing 344 n n # _atom_sites.entry_id 4JM2 _atom_sites.fract_transf_matrix[1][1] 0.004579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001205 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 10 PG4 C 1 301 1 PG4 PG4 . K 11 NAG E 1 522 1 NAG NAG . L 11 NAG E 1 523 1 NAG NAG . M 11 NAG E 1 524 1 NAG NAG . N 11 NAG E 1 525 1 NAG NAG . O 11 NAG E 1 526 1 NAG NAG . P 11 NAG E 1 527 1 NAG NAG . Q 12 HOH A 1 301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . J 10 53.657 -80.992 38.68 1 117.02 ? O1 PG4 301 C 1 HETATM 2 C C1 PG4 . . . J 10 54.027 -82.285 38.369 1 121.91 ? C1 PG4 301 C 1 HETATM 3 C C2 PG4 . . . J 10 55.303 -82.281 37.598 1 118.58 ? C2 PG4 301 C 1 HETATM 4 O O2 PG4 . . . J 10 55.041 -82.062 36.263 1 123.53 ? O2 PG4 301 C 1 HETATM 5 C C3 PG4 . . . J 10 56.078 -81.75 35.412 1 118.31 ? C3 PG4 301 C 1 HETATM 6 C C4 PG4 . . . J 10 56.6 -80.396 35.756 1 117.38 ? C4 PG4 301 C 1 HETATM 7 O O3 PG4 . . . J 10 57.975 -80.429 35.865 1 114.33 ? O3 PG4 301 C 1 HETATM 8 C C5 PG4 . . . J 10 58.763 -80.294 34.742 1 107.96 ? C5 PG4 301 C 1 HETATM 9 C C6 PG4 . . . J 10 59.486 -81.568 34.45 1 102.53 ? C6 PG4 301 C 1 HETATM 10 O O4 PG4 . . . J 10 60.382 -81.858 35.459 1 102.32 ? O4 PG4 301 C 1 HETATM 11 C C7 PG4 . . . J 10 59.963 -82.558 36.573 1 100.2 ? C7 PG4 301 C 1 HETATM 12 C C8 PG4 . . . J 10 60.066 -81.706 37.795 1 92.79 ? C8 PG4 301 C 1 HETATM 13 O O5 PG4 . . . J 10 59.6 -82.403 38.892 1 85.3 ? O5 PG4 301 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 520 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 13 #