data_4JMF
#
_model_server_result.job_id            tWuoJmM2JYKGX9lOerbydQ 
_model_server_result.datetime_utc      '2024-11-05 00:22:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jmf 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
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_entry.id    4JMF 
#
_exptl.entry_id    4JMF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4JMF 
_cell.length_a            78.322 
_cell.length_b            78.322 
_cell.length_c            194.221 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4JMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4JMF 
_atom_sites.fract_transf_matrix[1][1]    0.012768 
_atom_sites.fract_transf_matrix[1][2]    0.007371 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014743 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 GOL C 1 201 1 GOL GOL . 
E 4 HOH A 1 101 8 HOH HOH . 
E 4 HOH A 2 102 10 HOH HOH . 
E 4 HOH A 3 103 11 HOH HOH . 
E 4 HOH A 4 104 30 HOH HOH . 
E 4 HOH A 5 105 36 HOH HOH . 
E 4 HOH A 6 106 42 HOH HOH . 
E 4 HOH A 7 107 52 HOH HOH . 
E 4 HOH A 8 108 55 HOH HOH . 
E 4 HOH A 9 109 59 HOH HOH . 
E 4 HOH A 10 110 62 HOH HOH . 
E 4 HOH A 11 111 63 HOH HOH . 
E 4 HOH A 12 112 69 HOH HOH . 
E 4 HOH A 13 113 70 HOH HOH . 
E 4 HOH A 14 114 75 HOH HOH . 
E 4 HOH A 15 115 82 HOH HOH . 
E 4 HOH A 16 116 85 HOH HOH . 
E 4 HOH A 17 117 87 HOH HOH . 
E 4 HOH A 18 118 88 HOH HOH . 
E 4 HOH A 19 119 99 HOH HOH . 
E 4 HOH A 20 120 110 HOH HOH . 
E 4 HOH A 21 121 114 HOH HOH . 
E 4 HOH A 22 122 125 HOH HOH . 
E 4 HOH A 23 123 126 HOH HOH . 
E 4 HOH A 24 124 127 HOH HOH . 
E 4 HOH A 25 125 133 HOH HOH . 
E 4 HOH A 26 126 138 HOH HOH . 
E 4 HOH A 27 127 139 HOH HOH . 
F 4 HOH B 1 201 2 HOH HOH . 
F 4 HOH B 2 202 3 HOH HOH . 
F 4 HOH B 3 203 4 HOH HOH . 
F 4 HOH B 4 204 6 HOH HOH . 
F 4 HOH B 5 205 7 HOH HOH . 
F 4 HOH B 6 206 9 HOH HOH . 
F 4 HOH B 7 207 14 HOH HOH . 
F 4 HOH B 8 208 16 HOH HOH . 
F 4 HOH B 9 209 17 HOH HOH . 
F 4 HOH B 10 210 18 HOH HOH . 
F 4 HOH B 11 211 19 HOH HOH . 
F 4 HOH B 12 212 20 HOH HOH . 
F 4 HOH B 13 213 21 HOH HOH . 
F 4 HOH B 14 214 22 HOH HOH . 
F 4 HOH B 15 215 23 HOH HOH . 
F 4 HOH B 16 216 25 HOH HOH . 
F 4 HOH B 17 217 26 HOH HOH . 
F 4 HOH B 18 218 27 HOH HOH . 
F 4 HOH B 19 219 28 HOH HOH . 
F 4 HOH B 20 220 32 HOH HOH . 
F 4 HOH B 21 221 33 HOH HOH . 
F 4 HOH B 22 222 34 HOH HOH . 
F 4 HOH B 23 223 37 HOH HOH . 
F 4 HOH B 24 224 39 HOH HOH . 
F 4 HOH B 25 225 40 HOH HOH . 
F 4 HOH B 26 226 43 HOH HOH . 
F 4 HOH B 27 227 46 HOH HOH . 
F 4 HOH B 28 228 48 HOH HOH . 
F 4 HOH B 29 229 49 HOH HOH . 
F 4 HOH B 30 230 50 HOH HOH . 
F 4 HOH B 31 231 53 HOH HOH . 
F 4 HOH B 32 232 57 HOH HOH . 
F 4 HOH B 33 233 60 HOH HOH . 
F 4 HOH B 34 234 64 HOH HOH . 
F 4 HOH B 35 235 66 HOH HOH . 
F 4 HOH B 36 236 67 HOH HOH . 
F 4 HOH B 37 237 71 HOH HOH . 
F 4 HOH B 38 238 72 HOH HOH . 
F 4 HOH B 39 239 77 HOH HOH . 
F 4 HOH B 40 240 78 HOH HOH . 
F 4 HOH B 41 241 80 HOH HOH . 
F 4 HOH B 42 242 81 HOH HOH . 
F 4 HOH B 43 243 83 HOH HOH . 
F 4 HOH B 44 244 84 HOH HOH . 
F 4 HOH B 45 245 89 HOH HOH . 
F 4 HOH B 46 246 90 HOH HOH . 
F 4 HOH B 47 247 91 HOH HOH . 
F 4 HOH B 48 248 96 HOH HOH . 
F 4 HOH B 49 249 97 HOH HOH . 
F 4 HOH B 50 250 100 HOH HOH . 
F 4 HOH B 51 251 103 HOH HOH . 
F 4 HOH B 52 252 106 HOH HOH . 
F 4 HOH B 53 253 107 HOH HOH . 
F 4 HOH B 54 254 108 HOH HOH . 
F 4 HOH B 55 255 109 HOH HOH . 
F 4 HOH B 56 256 112 HOH HOH . 
F 4 HOH B 57 257 119 HOH HOH . 
F 4 HOH B 58 258 120 HOH HOH . 
F 4 HOH B 59 259 129 HOH HOH . 
F 4 HOH B 60 260 132 HOH HOH . 
F 4 HOH B 61 261 135 HOH HOH . 
F 4 HOH B 62 262 136 HOH HOH . 
F 4 HOH B 63 263 137 HOH HOH . 
G 4 HOH C 1 301 1 HOH HOH . 
G 4 HOH C 2 302 5 HOH HOH . 
G 4 HOH C 3 303 12 HOH HOH . 
G 4 HOH C 4 304 13 HOH HOH . 
G 4 HOH C 5 305 15 HOH HOH . 
G 4 HOH C 6 306 24 HOH HOH . 
G 4 HOH C 7 307 29 HOH HOH . 
G 4 HOH C 8 308 35 HOH HOH . 
G 4 HOH C 9 309 38 HOH HOH . 
G 4 HOH C 10 310 41 HOH HOH . 
G 4 HOH C 11 311 44 HOH HOH . 
G 4 HOH C 12 312 45 HOH HOH . 
G 4 HOH C 13 313 47 HOH HOH . 
G 4 HOH C 14 314 51 HOH HOH . 
G 4 HOH C 15 315 54 HOH HOH . 
G 4 HOH C 16 316 56 HOH HOH . 
G 4 HOH C 17 317 58 HOH HOH . 
G 4 HOH C 18 318 61 HOH HOH . 
G 4 HOH C 19 319 65 HOH HOH . 
G 4 HOH C 20 320 68 HOH HOH . 
G 4 HOH C 21 321 73 HOH HOH . 
G 4 HOH C 22 322 74 HOH HOH . 
G 4 HOH C 23 323 76 HOH HOH . 
G 4 HOH C 24 324 79 HOH HOH . 
G 4 HOH C 25 325 86 HOH HOH . 
G 4 HOH C 26 326 92 HOH HOH . 
G 4 HOH C 27 327 93 HOH HOH . 
G 4 HOH C 28 328 94 HOH HOH . 
G 4 HOH C 29 329 95 HOH HOH . 
G 4 HOH C 30 330 98 HOH HOH . 
G 4 HOH C 31 331 101 HOH HOH . 
G 4 HOH C 32 332 102 HOH HOH . 
G 4 HOH C 33 333 105 HOH HOH . 
G 4 HOH C 34 334 113 HOH HOH . 
G 4 HOH C 35 335 115 HOH HOH . 
G 4 HOH C 36 336 116 HOH HOH . 
G 4 HOH C 37 337 117 HOH HOH . 
G 4 HOH C 38 338 118 HOH HOH . 
G 4 HOH C 39 339 121 HOH HOH . 
G 4 HOH C 40 340 122 HOH HOH . 
G 4 HOH C 41 341 123 HOH HOH . 
G 4 HOH C 42 342 124 HOH HOH . 
G 4 HOH C 43 343 128 HOH HOH . 
G 4 HOH C 44 344 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 2.39 29.153 103.127 1 29.22 ? C1 GOL 201 C 1 
HETATM 2 O O1 GOL . . . D 3 2.299 28.661 104.453 1 37.27 ? O1 GOL 201 C 1 
HETATM 3 C C2 GOL . . . D 3 2.902 30.596 103.138 1 35.44 ? C2 GOL 201 C 1 
HETATM 4 O O2 GOL . . . D 3 1.818 31.502 103.339 1 31.54 ? O2 GOL 201 C 1 
HETATM 5 C C3 GOL . . . D 3 3.61 30.912 101.809 1 35.68 ? C3 GOL 201 C 1 
HETATM 6 O O3 GOL . . . D 3 4.088 32.253 101.78 1 30.61 ? O3 GOL 201 C 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
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