data_4JML # _model_server_result.job_id 70oagHDeroGTQkrRIiMMMQ _model_server_result.datetime_utc '2025-09-08 11:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4JML # _exptl.entry_id 4JML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JML _cell.length_a 40.089 _cell.length_b 81.42 _cell.length_c 126.437 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JML _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 180 A CYS 201 1_555 B SG CYS 2 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc1 A OD1 ASP 315 A ASP 336 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 C CA CA . A CA 501 1_555 D O HOH . A HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc3 C CA CA . A CA 501 1_555 D O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc4 C CA CA . A CA 501 1_555 D O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc5 C CA CA . A CA 501 1_555 D O HOH . A HOH 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc6 C CA CA . A CA 501 1_555 D O HOH . A HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc7 C CA CA . A CA 501 1_555 D O HOH . A HOH 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc8 C CA CA . A CA 501 1_555 D O HOH . A HOH 764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4JML _atom_sites.fract_transf_matrix[1][1] 0.024944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 501 1 CA CA . D 4 HOH A 1 601 2 HOH HOH . D 4 HOH A 2 602 3 HOH HOH . D 4 HOH A 3 603 4 HOH HOH . D 4 HOH A 4 604 6 HOH HOH . D 4 HOH A 5 605 7 HOH HOH . D 4 HOH A 6 606 8 HOH HOH . D 4 HOH A 7 607 9 HOH HOH . D 4 HOH A 8 608 10 HOH HOH . D 4 HOH A 9 609 11 HOH HOH . D 4 HOH A 10 610 12 HOH HOH . D 4 HOH A 11 611 13 HOH HOH . D 4 HOH A 12 612 14 HOH HOH . D 4 HOH A 13 613 15 HOH HOH . D 4 HOH A 14 614 16 HOH HOH . D 4 HOH A 15 615 17 HOH HOH . D 4 HOH A 16 616 18 HOH HOH . D 4 HOH A 17 617 19 HOH HOH . D 4 HOH A 18 618 20 HOH HOH . D 4 HOH A 19 619 21 HOH HOH . D 4 HOH A 20 620 22 HOH HOH . D 4 HOH A 21 621 23 HOH HOH . D 4 HOH A 22 622 24 HOH HOH . D 4 HOH A 23 623 25 HOH HOH . D 4 HOH A 24 624 26 HOH HOH . D 4 HOH A 25 625 27 HOH HOH . D 4 HOH A 26 626 28 HOH HOH . D 4 HOH A 27 627 29 HOH HOH . D 4 HOH A 28 628 30 HOH HOH . D 4 HOH A 29 629 31 HOH HOH . D 4 HOH A 30 630 32 HOH HOH . D 4 HOH A 31 631 33 HOH HOH . D 4 HOH A 32 632 34 HOH HOH . D 4 HOH A 33 633 35 HOH HOH . D 4 HOH A 34 634 38 HOH HOH . D 4 HOH A 35 635 39 HOH HOH . D 4 HOH A 36 636 40 HOH HOH . D 4 HOH A 37 637 42 HOH HOH . D 4 HOH A 38 638 43 HOH HOH . D 4 HOH A 39 639 44 HOH HOH . D 4 HOH A 40 640 47 HOH HOH . D 4 HOH A 41 641 48 HOH HOH . D 4 HOH A 42 642 49 HOH HOH . D 4 HOH A 43 643 51 HOH HOH . D 4 HOH A 44 644 53 HOH HOH . D 4 HOH A 45 645 54 HOH HOH . D 4 HOH A 46 646 55 HOH HOH . D 4 HOH A 47 647 57 HOH HOH . D 4 HOH A 48 648 59 HOH HOH . D 4 HOH A 49 649 60 HOH HOH . D 4 HOH A 50 650 61 HOH HOH . D 4 HOH A 51 651 62 HOH HOH . D 4 HOH A 52 652 65 HOH HOH . D 4 HOH A 53 653 67 HOH HOH . D 4 HOH A 54 654 68 HOH HOH . D 4 HOH A 55 655 69 HOH HOH . D 4 HOH A 56 656 70 HOH HOH . D 4 HOH A 57 657 71 HOH HOH . D 4 HOH A 58 658 72 HOH HOH . D 4 HOH A 59 659 76 HOH HOH . D 4 HOH A 60 660 77 HOH HOH . D 4 HOH A 61 661 78 HOH HOH . D 4 HOH A 62 662 79 HOH HOH . D 4 HOH A 63 663 81 HOH HOH . D 4 HOH A 64 664 83 HOH HOH . D 4 HOH A 65 665 84 HOH HOH . D 4 HOH A 66 666 85 HOH HOH . D 4 HOH A 67 667 86 HOH HOH . D 4 HOH A 68 668 87 HOH HOH . D 4 HOH A 69 669 88 HOH HOH . D 4 HOH A 70 670 89 HOH HOH . D 4 HOH A 71 671 90 HOH HOH . D 4 HOH A 72 672 91 HOH HOH . D 4 HOH A 73 673 92 HOH HOH . D 4 HOH A 74 674 93 HOH HOH . D 4 HOH A 75 675 94 HOH HOH . D 4 HOH A 76 676 95 HOH HOH . D 4 HOH A 77 677 96 HOH HOH . D 4 HOH A 78 678 97 HOH HOH . D 4 HOH A 79 679 98 HOH HOH . D 4 HOH A 80 680 99 HOH HOH . D 4 HOH A 81 681 100 HOH HOH . D 4 HOH A 82 682 101 HOH HOH . D 4 HOH A 83 683 102 HOH HOH . D 4 HOH A 84 684 103 HOH HOH . D 4 HOH A 85 685 105 HOH HOH . D 4 HOH A 86 686 106 HOH HOH . D 4 HOH A 87 687 107 HOH HOH . D 4 HOH A 88 688 109 HOH HOH . D 4 HOH A 89 689 110 HOH HOH . D 4 HOH A 90 690 111 HOH HOH . D 4 HOH A 91 691 112 HOH HOH . D 4 HOH A 92 692 113 HOH HOH . D 4 HOH A 93 693 114 HOH HOH . D 4 HOH A 94 694 116 HOH HOH . D 4 HOH A 95 695 118 HOH HOH . D 4 HOH A 96 696 120 HOH HOH . D 4 HOH A 97 697 121 HOH HOH . D 4 HOH A 98 698 122 HOH HOH . D 4 HOH A 99 699 123 HOH HOH . D 4 HOH A 100 700 125 HOH HOH . D 4 HOH A 101 701 126 HOH HOH . D 4 HOH A 102 702 127 HOH HOH . D 4 HOH A 103 703 128 HOH HOH . D 4 HOH A 104 704 129 HOH HOH . D 4 HOH A 105 705 130 HOH HOH . D 4 HOH A 106 706 131 HOH HOH . D 4 HOH A 107 707 132 HOH HOH . D 4 HOH A 108 708 133 HOH HOH . D 4 HOH A 109 709 134 HOH HOH . D 4 HOH A 110 710 135 HOH HOH . D 4 HOH A 111 711 137 HOH HOH . D 4 HOH A 112 712 138 HOH HOH . D 4 HOH A 113 713 139 HOH HOH . D 4 HOH A 114 714 140 HOH HOH . D 4 HOH A 115 715 141 HOH HOH . D 4 HOH A 116 716 142 HOH HOH . D 4 HOH A 117 717 143 HOH HOH . D 4 HOH A 118 718 146 HOH HOH . D 4 HOH A 119 719 147 HOH HOH . D 4 HOH A 120 720 148 HOH HOH . D 4 HOH A 121 721 149 HOH HOH . D 4 HOH A 122 722 150 HOH HOH . D 4 HOH A 123 723 151 HOH HOH . D 4 HOH A 124 724 152 HOH HOH . D 4 HOH A 125 725 153 HOH HOH . D 4 HOH A 126 726 154 HOH HOH . D 4 HOH A 127 727 155 HOH HOH . D 4 HOH A 128 728 156 HOH HOH . D 4 HOH A 129 729 158 HOH HOH . D 4 HOH A 130 730 159 HOH HOH . D 4 HOH A 131 731 160 HOH HOH . D 4 HOH A 132 732 161 HOH HOH . D 4 HOH A 133 733 162 HOH HOH . D 4 HOH A 134 734 163 HOH HOH . D 4 HOH A 135 735 164 HOH HOH . D 4 HOH A 136 736 167 HOH HOH . D 4 HOH A 137 737 168 HOH HOH . D 4 HOH A 138 738 169 HOH HOH . D 4 HOH A 139 739 170 HOH HOH . D 4 HOH A 140 740 171 HOH HOH . D 4 HOH A 141 741 172 HOH HOH . D 4 HOH A 142 742 173 HOH HOH . D 4 HOH A 143 743 174 HOH HOH . D 4 HOH A 144 744 175 HOH HOH . D 4 HOH A 145 745 176 HOH HOH . D 4 HOH A 146 746 177 HOH HOH . D 4 HOH A 147 747 178 HOH HOH . D 4 HOH A 148 748 179 HOH HOH . D 4 HOH A 149 749 180 HOH HOH . D 4 HOH A 150 750 181 HOH HOH . D 4 HOH A 151 751 182 HOH HOH . D 4 HOH A 152 752 183 HOH HOH . D 4 HOH A 153 753 184 HOH HOH . D 4 HOH A 154 754 186 HOH HOH . D 4 HOH A 155 755 187 HOH HOH . D 4 HOH A 156 756 188 HOH HOH . D 4 HOH A 157 757 189 HOH HOH . D 4 HOH A 158 758 190 HOH HOH . D 4 HOH A 159 759 191 HOH HOH . D 4 HOH A 160 760 192 HOH HOH . D 4 HOH A 161 761 195 HOH HOH . D 4 HOH A 162 762 196 HOH HOH . D 4 HOH A 163 763 197 HOH HOH . D 4 HOH A 164 764 199 HOH HOH . D 4 HOH A 165 765 200 HOH HOH . D 4 HOH A 166 766 201 HOH HOH . D 4 HOH A 167 767 202 HOH HOH . D 4 HOH A 168 768 203 HOH HOH . D 4 HOH A 169 769 204 HOH HOH . D 4 HOH A 170 770 205 HOH HOH . D 4 HOH A 171 771 206 HOH HOH . D 4 HOH A 172 772 208 HOH HOH . D 4 HOH A 173 773 209 HOH HOH . D 4 HOH A 174 774 210 HOH HOH . D 4 HOH A 175 775 211 HOH HOH . D 4 HOH A 176 776 212 HOH HOH . D 4 HOH A 177 777 213 HOH HOH . D 4 HOH A 178 778 214 HOH HOH . D 4 HOH A 179 779 215 HOH HOH . D 4 HOH A 180 780 216 HOH HOH . D 4 HOH A 181 781 217 HOH HOH . D 4 HOH A 182 782 218 HOH HOH . D 4 HOH A 183 783 220 HOH HOH . D 4 HOH A 184 784 221 HOH HOH . D 4 HOH A 185 785 222 HOH HOH . D 4 HOH A 186 786 223 HOH HOH . D 4 HOH A 187 787 224 HOH HOH . D 4 HOH A 188 788 225 HOH HOH . D 4 HOH A 189 789 226 HOH HOH . D 4 HOH A 190 790 228 HOH HOH . D 4 HOH A 191 791 229 HOH HOH . D 4 HOH A 192 792 230 HOH HOH . D 4 HOH A 193 793 231 HOH HOH . D 4 HOH A 194 794 232 HOH HOH . D 4 HOH A 195 795 234 HOH HOH . D 4 HOH A 196 796 235 HOH HOH . D 4 HOH A 197 797 236 HOH HOH . D 4 HOH A 198 798 237 HOH HOH . D 4 HOH A 199 799 238 HOH HOH . D 4 HOH A 200 800 239 HOH HOH . D 4 HOH A 201 801 240 HOH HOH . D 4 HOH A 202 802 241 HOH HOH . D 4 HOH A 203 803 244 HOH HOH . D 4 HOH A 204 804 245 HOH HOH . D 4 HOH A 205 805 246 HOH HOH . D 4 HOH A 206 806 247 HOH HOH . D 4 HOH A 207 807 248 HOH HOH . D 4 HOH A 208 808 249 HOH HOH . D 4 HOH A 209 809 250 HOH HOH . D 4 HOH A 210 810 251 HOH HOH . D 4 HOH A 211 811 252 HOH HOH . D 4 HOH A 212 812 253 HOH HOH . D 4 HOH A 213 813 254 HOH HOH . D 4 HOH A 214 814 255 HOH HOH . D 4 HOH A 215 815 256 HOH HOH . D 4 HOH A 216 816 257 HOH HOH . D 4 HOH A 217 817 258 HOH HOH . D 4 HOH A 218 818 259 HOH HOH . D 4 HOH A 219 819 261 HOH HOH . D 4 HOH A 220 820 262 HOH HOH . D 4 HOH A 221 821 264 HOH HOH . D 4 HOH A 222 822 265 HOH HOH . D 4 HOH A 223 823 266 HOH HOH . D 4 HOH A 224 824 267 HOH HOH . D 4 HOH A 225 825 268 HOH HOH . D 4 HOH A 226 826 269 HOH HOH . D 4 HOH A 227 827 270 HOH HOH . D 4 HOH A 228 828 271 HOH HOH . D 4 HOH A 229 829 273 HOH HOH . D 4 HOH A 230 830 274 HOH HOH . D 4 HOH A 231 831 276 HOH HOH . D 4 HOH A 232 832 278 HOH HOH . D 4 HOH A 233 833 279 HOH HOH . D 4 HOH A 234 834 281 HOH HOH . D 4 HOH A 235 835 283 HOH HOH . D 4 HOH A 236 836 284 HOH HOH . D 4 HOH A 237 837 285 HOH HOH . D 4 HOH A 238 838 286 HOH HOH . D 4 HOH A 239 839 287 HOH HOH . D 4 HOH A 240 840 288 HOH HOH . D 4 HOH A 241 841 289 HOH HOH . D 4 HOH A 242 842 290 HOH HOH . D 4 HOH A 243 843 294 HOH HOH . D 4 HOH A 244 844 295 HOH HOH . D 4 HOH A 245 845 296 HOH HOH . D 4 HOH A 246 846 297 HOH HOH . D 4 HOH A 247 847 298 HOH HOH . D 4 HOH A 248 848 299 HOH HOH . D 4 HOH A 249 849 300 HOH HOH . D 4 HOH A 250 850 301 HOH HOH . D 4 HOH A 251 851 303 HOH HOH . D 4 HOH A 252 852 304 HOH HOH . D 4 HOH A 253 853 305 HOH HOH . D 4 HOH A 254 854 306 HOH HOH . D 4 HOH A 255 855 307 HOH HOH . D 4 HOH A 256 856 308 HOH HOH . D 4 HOH A 257 857 309 HOH HOH . D 4 HOH A 258 858 310 HOH HOH . D 4 HOH A 259 859 311 HOH HOH . D 4 HOH A 260 860 312 HOH HOH . D 4 HOH A 261 861 313 HOH HOH . D 4 HOH A 262 862 315 HOH HOH . D 4 HOH A 263 863 316 HOH HOH . D 4 HOH A 264 864 318 HOH HOH . D 4 HOH A 265 865 319 HOH HOH . D 4 HOH A 266 866 320 HOH HOH . D 4 HOH A 267 867 321 HOH HOH . D 4 HOH A 268 868 322 HOH HOH . D 4 HOH A 269 869 323 HOH HOH . D 4 HOH A 270 870 324 HOH HOH . D 4 HOH A 271 871 325 HOH HOH . D 4 HOH A 272 872 326 HOH HOH . D 4 HOH A 273 873 327 HOH HOH . D 4 HOH A 274 874 328 HOH HOH . E 4 HOH E 1 101 56 HOH HOH . E 4 HOH E 2 102 63 HOH HOH . E 4 HOH E 3 103 104 HOH HOH . E 4 HOH E 4 104 115 HOH HOH . E 4 HOH E 5 105 185 HOH HOH . E 4 HOH E 6 106 219 HOH HOH . E 4 HOH E 7 107 272 HOH HOH . E 4 HOH E 8 108 293 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.231 _atom_site.Cartn_y -1.96 _atom_site.Cartn_z 8.043 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #