data_4JOA # _model_server_result.job_id 3NXTcKxRnp2MmwR7oPIsyg _model_server_result.datetime_utc '2024-11-09 02:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4joa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 4JOA # _exptl.entry_id 4JOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.389 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[1-(2,5-difluorobenzyl)-1H-pyrazol-4-yl]-5-(1-methyl-1H-pyrazol-4-yl)-1H-pyrrolo[2,3-b]pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JOA _cell.length_a 51.794 _cell.length_b 56.503 _cell.length_c 104.536 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H16 F2 N6' _chem_comp.formula_weight 390.389 _chem_comp.id 3DK _chem_comp.mon_nstd_flag . _chem_comp.name 3-[1-(2,5-difluorobenzyl)-1H-pyrazol-4-yl]-5-(1-methyl-1H-pyrazol-4-yl)-1H-pyrrolo[2,3-b]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F28 C27 3DK sing 1 n n N7 C8 3DK sing 2 n y N7 C4 3DK sing 3 n y C8 C9 3DK doub 4 n y C16 N17 3DK sing 5 n y C16 C10 3DK doub 6 n y C27 C26 3DK doub 7 n y C27 C22 3DK sing 8 n y C4 N3 3DK doub 9 n y C4 C5 3DK sing 10 n y C21 N17 3DK sing 11 n n C21 C22 3DK sing 12 n n C9 C10 3DK sing 13 n n C9 C5 3DK sing 14 n y N3 C2 3DK sing 15 n y C26 C25 3DK sing 16 n y N17 N18 3DK sing 17 n y C22 C23 3DK doub 18 n y C10 C19 3DK sing 19 n y C5 C6 3DK doub 20 n y C2 C1 3DK doub 21 n y C25 C24 3DK doub 22 n y C23 C24 3DK sing 23 n y C6 C1 3DK sing 24 n y C1 C11 3DK sing 25 n n N18 C19 3DK doub 26 n y C24 F29 3DK sing 27 n n C11 C15 3DK doub 28 n y C11 C12 3DK sing 29 n y C15 N14 3DK sing 30 n y C12 N13 3DK doub 31 n y N14 N13 3DK sing 32 n y N14 C20 3DK sing 33 n n C23 H1 3DK sing 34 n n C25 H2 3DK sing 35 n n C26 H3 3DK sing 36 n n C21 H4 3DK sing 37 n n C21 H5 3DK sing 38 n n C16 H6 3DK sing 39 n n C19 H7 3DK sing 40 n n C8 H8 3DK sing 41 n n N7 H9 3DK sing 42 n n C2 H10 3DK sing 43 n n C6 H11 3DK sing 44 n n C15 H12 3DK sing 45 n n C20 H13 3DK sing 46 n n C20 H14 3DK sing 47 n n C20 H15 3DK sing 48 n n C12 H16 3DK sing 49 n n # _atom_sites.entry_id 4JOA _atom_sites.fract_transf_matrix[1][1] 0.019307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3DK A 1 1501 1 3DK LIG . C 3 HOH A 1 1601 1 HOH HOH . C 3 HOH A 2 1602 2 HOH HOH . C 3 HOH A 3 1603 3 HOH HOH . C 3 HOH A 4 1604 4 HOH HOH . C 3 HOH A 5 1605 5 HOH HOH . C 3 HOH A 6 1606 6 HOH HOH . C 3 HOH A 7 1607 7 HOH HOH . C 3 HOH A 8 1608 8 HOH HOH . C 3 HOH A 9 1609 9 HOH HOH . C 3 HOH A 10 1610 10 HOH HOH . C 3 HOH A 11 1611 11 HOH HOH . C 3 HOH A 12 1612 12 HOH HOH . C 3 HOH A 13 1613 13 HOH HOH . C 3 HOH A 14 1614 14 HOH HOH . C 3 HOH A 15 1615 15 HOH HOH . C 3 HOH A 16 1616 16 HOH HOH . C 3 HOH A 17 1617 17 HOH HOH . C 3 HOH A 18 1618 18 HOH HOH . C 3 HOH A 19 1619 19 HOH HOH . C 3 HOH A 20 1620 20 HOH HOH . C 3 HOH A 21 1621 21 HOH HOH . C 3 HOH A 22 1622 22 HOH HOH . C 3 HOH A 23 1623 23 HOH HOH . C 3 HOH A 24 1624 24 HOH HOH . C 3 HOH A 25 1625 25 HOH HOH . C 3 HOH A 26 1626 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F29 3DK . . . B 2 11.639 19.611 45.077 1 66.86 ? F29 3DK 1501 A 1 HETATM 2 C C24 3DK . . . B 2 10.739 19.26 44.141 1 66.77 ? C24 3DK 1501 A 1 HETATM 3 C C23 3DK . . . B 2 10.581 17.918 43.798 1 66.51 ? C23 3DK 1501 A 1 HETATM 4 C C25 3DK . . . B 2 9.971 20.236 43.511 1 66.49 ? C25 3DK 1501 A 1 HETATM 5 C C26 3DK . . . B 2 9.044 19.865 42.542 1 66.62 ? C26 3DK 1501 A 1 HETATM 6 C C27 3DK . . . B 2 8.887 18.521 42.201 1 66.75 ? C27 3DK 1501 A 1 HETATM 7 F F28 3DK . . . B 2 7.988 18.181 41.259 1 67.14 ? F28 3DK 1501 A 1 HETATM 8 C C22 3DK . . . B 2 9.646 17.542 42.834 1 66.16 ? C22 3DK 1501 A 1 HETATM 9 C C21 3DK . . . B 2 9.507 16.077 42.465 1 65.61 ? C21 3DK 1501 A 1 HETATM 10 N N17 3DK . . . B 2 8.188 15.495 42.734 1 64.84 ? N17 3DK 1501 A 1 HETATM 11 C C16 3DK . . . B 2 7.099 15.289 41.984 1 64.3 ? C16 3DK 1501 A 1 HETATM 12 N N18 3DK . . . B 2 8.016 15.001 44.042 1 64.56 ? N18 3DK 1501 A 1 HETATM 13 C C19 3DK . . . B 2 6.766 14.483 44.118 1 64.21 ? C19 3DK 1501 A 1 HETATM 14 C C10 3DK . . . B 2 6.238 14.664 42.859 1 63.61 ? C10 3DK 1501 A 1 HETATM 15 C C9 3DK . . . B 2 4.858 14.252 42.488 1 63.61 ? C9 3DK 1501 A 1 HETATM 16 C C8 3DK . . . B 2 4.073 14.975 41.631 1 63.32 ? C8 3DK 1501 A 1 HETATM 17 N N7 3DK . . . B 2 2.899 14.292 41.547 1 63.29 ? N7 3DK 1501 A 1 HETATM 18 C C4 3DK . . . B 2 2.9 13.172 42.312 1 63.23 ? C4 3DK 1501 A 1 HETATM 19 N N3 3DK . . . B 2 1.96 12.214 42.528 1 63.18 ? N3 3DK 1501 A 1 HETATM 20 C C2 3DK . . . B 2 2.199 11.176 43.345 1 63.3 ? C2 3DK 1501 A 1 HETATM 21 C C5 3DK . . . B 2 4.124 13.065 42.958 1 63.41 ? C5 3DK 1501 A 1 HETATM 22 C C6 3DK . . . B 2 4.414 12.009 43.813 1 63.31 ? C6 3DK 1501 A 1 HETATM 23 C C1 3DK . . . B 2 3.424 11.042 44.011 1 63.33 ? C1 3DK 1501 A 1 HETATM 24 C C11 3DK . . . B 2 3.663 9.874 44.915 1 63.39 ? C11 3DK 1501 A 1 HETATM 25 C C15 3DK . . . B 2 2.843 8.756 45.04 1 63.51 ? C15 3DK 1501 A 1 HETATM 26 N N14 3DK . . . B 2 3.418 7.961 45.942 1 63.74 ? N14 3DK 1501 A 1 HETATM 27 C C20 3DK . . . B 2 3.045 6.639 46.513 1 63.62 ? C20 3DK 1501 A 1 HETATM 28 N N13 3DK . . . B 2 4.607 8.521 46.423 1 63.59 ? N13 3DK 1501 A 1 HETATM 29 C C12 3DK . . . B 2 4.747 9.703 45.779 1 63.45 ? C12 3DK 1501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #