data_4JOG # _model_server_result.job_id 8H2uSKr-t6HAMj7tzYa51g _model_server_result.datetime_utc '2024-11-25 23:58:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4JOG # _exptl.entry_id 4JOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JOG _cell.length_a 36.673 _cell.length_b 47.938 _cell.length_c 97.848 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,H,J 1 1 B,D,G,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4JOG _atom_sites.fract_transf_matrix[1][1] 0.027268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 401 1 GOL GOL . F 3 GOL A 1 402 5 GOL GOL . G 3 GOL B 1 401 3 GOL GOL . H 4 HOH A 1 501 186 HOH HOH . H 4 HOH A 2 502 188 HOH HOH . H 4 HOH A 3 503 6 HOH HOH . H 4 HOH A 4 504 7 HOH HOH . H 4 HOH A 5 505 12 HOH HOH . H 4 HOH A 6 506 13 HOH HOH . H 4 HOH A 7 507 15 HOH HOH . H 4 HOH A 8 508 16 HOH HOH . H 4 HOH A 9 509 17 HOH HOH . H 4 HOH A 10 510 19 HOH HOH . H 4 HOH A 11 511 23 HOH HOH . H 4 HOH A 12 512 28 HOH HOH . H 4 HOH A 13 513 29 HOH HOH . H 4 HOH A 14 514 33 HOH HOH . H 4 HOH A 15 515 34 HOH HOH . H 4 HOH A 16 516 35 HOH HOH . H 4 HOH A 17 517 37 HOH HOH . H 4 HOH A 18 518 39 HOH HOH . H 4 HOH A 19 519 42 HOH HOH . H 4 HOH A 20 520 45 HOH HOH . H 4 HOH A 21 521 48 HOH HOH . H 4 HOH A 22 522 49 HOH HOH . H 4 HOH A 23 523 51 HOH HOH . H 4 HOH A 24 524 54 HOH HOH . H 4 HOH A 25 525 55 HOH HOH . H 4 HOH A 26 526 58 HOH HOH . H 4 HOH A 27 527 60 HOH HOH . H 4 HOH A 28 528 64 HOH HOH . H 4 HOH A 29 529 66 HOH HOH . H 4 HOH A 30 530 69 HOH HOH . H 4 HOH A 31 531 72 HOH HOH . H 4 HOH A 32 532 74 HOH HOH . H 4 HOH A 33 533 75 HOH HOH . H 4 HOH A 34 534 76 HOH HOH . H 4 HOH A 35 535 79 HOH HOH . H 4 HOH A 36 536 81 HOH HOH . H 4 HOH A 37 537 85 HOH HOH . H 4 HOH A 38 538 87 HOH HOH . H 4 HOH A 39 539 90 HOH HOH . H 4 HOH A 40 540 98 HOH HOH . H 4 HOH A 41 541 100 HOH HOH . H 4 HOH A 42 542 101 HOH HOH . H 4 HOH A 43 543 102 HOH HOH . H 4 HOH A 44 544 105 HOH HOH . H 4 HOH A 45 545 109 HOH HOH . H 4 HOH A 46 546 110 HOH HOH . H 4 HOH A 47 547 111 HOH HOH . H 4 HOH A 48 548 121 HOH HOH . H 4 HOH A 49 549 123 HOH HOH . H 4 HOH A 50 550 124 HOH HOH . H 4 HOH A 51 551 126 HOH HOH . H 4 HOH A 52 552 128 HOH HOH . H 4 HOH A 53 553 129 HOH HOH . H 4 HOH A 54 554 131 HOH HOH . H 4 HOH A 55 555 136 HOH HOH . H 4 HOH A 56 556 138 HOH HOH . H 4 HOH A 57 557 139 HOH HOH . H 4 HOH A 58 558 142 HOH HOH . H 4 HOH A 59 559 143 HOH HOH . H 4 HOH A 60 560 144 HOH HOH . H 4 HOH A 61 561 147 HOH HOH . H 4 HOH A 62 562 148 HOH HOH . H 4 HOH A 63 563 152 HOH HOH . H 4 HOH A 64 564 156 HOH HOH . H 4 HOH A 65 565 157 HOH HOH . H 4 HOH A 66 566 159 HOH HOH . H 4 HOH A 67 567 161 HOH HOH . H 4 HOH A 68 568 163 HOH HOH . H 4 HOH A 69 569 165 HOH HOH . H 4 HOH A 70 570 168 HOH HOH . H 4 HOH A 71 571 170 HOH HOH . H 4 HOH A 72 572 172 HOH HOH . H 4 HOH A 73 573 173 HOH HOH . H 4 HOH A 74 574 175 HOH HOH . H 4 HOH A 75 575 176 HOH HOH . H 4 HOH A 76 576 177 HOH HOH . H 4 HOH A 77 577 178 HOH HOH . H 4 HOH A 78 578 179 HOH HOH . H 4 HOH A 79 579 180 HOH HOH . H 4 HOH A 80 580 181 HOH HOH . H 4 HOH A 81 581 182 HOH HOH . H 4 HOH A 82 582 183 HOH HOH . I 4 HOH B 1 501 185 HOH HOH . I 4 HOH B 2 502 187 HOH HOH . I 4 HOH B 3 503 10 HOH HOH . I 4 HOH B 4 504 11 HOH HOH . I 4 HOH B 5 505 14 HOH HOH . I 4 HOH B 6 506 18 HOH HOH . I 4 HOH B 7 507 20 HOH HOH . I 4 HOH B 8 508 22 HOH HOH . I 4 HOH B 9 509 25 HOH HOH . I 4 HOH B 10 510 26 HOH HOH . I 4 HOH B 11 511 27 HOH HOH . I 4 HOH B 12 512 31 HOH HOH . I 4 HOH B 13 513 32 HOH HOH . I 4 HOH B 14 514 36 HOH HOH . I 4 HOH B 15 515 38 HOH HOH . I 4 HOH B 16 516 40 HOH HOH . I 4 HOH B 17 517 41 HOH HOH . I 4 HOH B 18 518 43 HOH HOH . I 4 HOH B 19 519 44 HOH HOH . I 4 HOH B 20 520 46 HOH HOH . I 4 HOH B 21 521 50 HOH HOH . I 4 HOH B 22 522 52 HOH HOH . I 4 HOH B 23 523 57 HOH HOH . I 4 HOH B 24 524 59 HOH HOH . I 4 HOH B 25 525 62 HOH HOH . I 4 HOH B 26 526 65 HOH HOH . I 4 HOH B 27 527 70 HOH HOH . I 4 HOH B 28 528 71 HOH HOH . I 4 HOH B 29 529 77 HOH HOH . I 4 HOH B 30 530 80 HOH HOH . I 4 HOH B 31 531 82 HOH HOH . I 4 HOH B 32 532 83 HOH HOH . I 4 HOH B 33 533 86 HOH HOH . I 4 HOH B 34 534 88 HOH HOH . I 4 HOH B 35 535 89 HOH HOH . I 4 HOH B 36 536 91 HOH HOH . I 4 HOH B 37 537 92 HOH HOH . I 4 HOH B 38 538 93 HOH HOH . I 4 HOH B 39 539 94 HOH HOH . I 4 HOH B 40 540 95 HOH HOH . I 4 HOH B 41 541 96 HOH HOH . I 4 HOH B 42 542 99 HOH HOH . I 4 HOH B 43 543 103 HOH HOH . I 4 HOH B 44 544 104 HOH HOH . I 4 HOH B 45 545 106 HOH HOH . I 4 HOH B 46 546 107 HOH HOH . I 4 HOH B 47 547 108 HOH HOH . I 4 HOH B 48 548 112 HOH HOH . I 4 HOH B 49 549 113 HOH HOH . I 4 HOH B 50 550 114 HOH HOH . I 4 HOH B 51 551 115 HOH HOH . I 4 HOH B 52 552 118 HOH HOH . I 4 HOH B 53 553 119 HOH HOH . I 4 HOH B 54 554 122 HOH HOH . I 4 HOH B 55 555 130 HOH HOH . I 4 HOH B 56 556 132 HOH HOH . I 4 HOH B 57 557 133 HOH HOH . I 4 HOH B 58 558 134 HOH HOH . I 4 HOH B 59 559 135 HOH HOH . I 4 HOH B 60 560 140 HOH HOH . I 4 HOH B 61 561 145 HOH HOH . I 4 HOH B 62 562 149 HOH HOH . I 4 HOH B 63 563 150 HOH HOH . I 4 HOH B 64 564 151 HOH HOH . I 4 HOH B 65 565 153 HOH HOH . I 4 HOH B 66 566 154 HOH HOH . I 4 HOH B 67 567 155 HOH HOH . I 4 HOH B 68 568 158 HOH HOH . I 4 HOH B 69 569 160 HOH HOH . I 4 HOH B 70 570 162 HOH HOH . I 4 HOH B 71 571 164 HOH HOH . I 4 HOH B 72 572 166 HOH HOH . I 4 HOH B 73 573 167 HOH HOH . I 4 HOH B 74 574 169 HOH HOH . I 4 HOH B 75 575 174 HOH HOH . J 4 HOH C 1 101 184 HOH HOH . J 4 HOH C 2 102 8 HOH HOH . J 4 HOH C 3 103 9 HOH HOH . J 4 HOH C 4 104 47 HOH HOH . J 4 HOH C 5 105 53 HOH HOH . J 4 HOH C 6 106 56 HOH HOH . J 4 HOH C 7 107 61 HOH HOH . J 4 HOH C 8 108 67 HOH HOH . J 4 HOH C 9 109 78 HOH HOH . J 4 HOH C 10 110 117 HOH HOH . J 4 HOH C 11 111 141 HOH HOH . K 4 HOH D 1 101 21 HOH HOH . K 4 HOH D 2 102 24 HOH HOH . K 4 HOH D 3 103 30 HOH HOH . K 4 HOH D 4 104 63 HOH HOH . K 4 HOH D 5 105 68 HOH HOH . K 4 HOH D 6 106 73 HOH HOH . K 4 HOH D 7 107 84 HOH HOH . K 4 HOH D 8 108 97 HOH HOH . K 4 HOH D 9 109 116 HOH HOH . K 4 HOH D 10 110 120 HOH HOH . K 4 HOH D 11 111 125 HOH HOH . K 4 HOH D 12 112 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 27.185 35.203 70.603 1 22.44 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . E 3 26.85 36.338 71.369 1 33.61 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . E 3 28.511 34.628 71.089 1 14 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . E 3 28.254 33.482 71.883 1 14.98 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . E 3 29.303 34.193 69.867 1 12.23 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . E 3 28.512 33.282 69.136 1 13.96 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #