data_4JOG
#
_model_server_result.job_id            97hIYhLe4XOXL6VmpDdpxQ 
_model_server_result.datetime_utc      '2024-11-05 16:27:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jog 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    4JOG 
#
_exptl.entry_id    4JOG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JOG 
_cell.length_a            36.673 
_cell.length_b            47.938 
_cell.length_c            97.848 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JOG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,H,J 1 1 
B,D,G,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4JOG 
_atom_sites.fract_transf_matrix[1][1]    0.027268 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02086 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 401 1 GOL GOL . 
F 3 GOL A 1 402 5 GOL GOL . 
G 3 GOL B 1 401 3 GOL GOL . 
H 4 HOH A 1 501 186 HOH HOH . 
H 4 HOH A 2 502 188 HOH HOH . 
H 4 HOH A 3 503 6 HOH HOH . 
H 4 HOH A 4 504 7 HOH HOH . 
H 4 HOH A 5 505 12 HOH HOH . 
H 4 HOH A 6 506 13 HOH HOH . 
H 4 HOH A 7 507 15 HOH HOH . 
H 4 HOH A 8 508 16 HOH HOH . 
H 4 HOH A 9 509 17 HOH HOH . 
H 4 HOH A 10 510 19 HOH HOH . 
H 4 HOH A 11 511 23 HOH HOH . 
H 4 HOH A 12 512 28 HOH HOH . 
H 4 HOH A 13 513 29 HOH HOH . 
H 4 HOH A 14 514 33 HOH HOH . 
H 4 HOH A 15 515 34 HOH HOH . 
H 4 HOH A 16 516 35 HOH HOH . 
H 4 HOH A 17 517 37 HOH HOH . 
H 4 HOH A 18 518 39 HOH HOH . 
H 4 HOH A 19 519 42 HOH HOH . 
H 4 HOH A 20 520 45 HOH HOH . 
H 4 HOH A 21 521 48 HOH HOH . 
H 4 HOH A 22 522 49 HOH HOH . 
H 4 HOH A 23 523 51 HOH HOH . 
H 4 HOH A 24 524 54 HOH HOH . 
H 4 HOH A 25 525 55 HOH HOH . 
H 4 HOH A 26 526 58 HOH HOH . 
H 4 HOH A 27 527 60 HOH HOH . 
H 4 HOH A 28 528 64 HOH HOH . 
H 4 HOH A 29 529 66 HOH HOH . 
H 4 HOH A 30 530 69 HOH HOH . 
H 4 HOH A 31 531 72 HOH HOH . 
H 4 HOH A 32 532 74 HOH HOH . 
H 4 HOH A 33 533 75 HOH HOH . 
H 4 HOH A 34 534 76 HOH HOH . 
H 4 HOH A 35 535 79 HOH HOH . 
H 4 HOH A 36 536 81 HOH HOH . 
H 4 HOH A 37 537 85 HOH HOH . 
H 4 HOH A 38 538 87 HOH HOH . 
H 4 HOH A 39 539 90 HOH HOH . 
H 4 HOH A 40 540 98 HOH HOH . 
H 4 HOH A 41 541 100 HOH HOH . 
H 4 HOH A 42 542 101 HOH HOH . 
H 4 HOH A 43 543 102 HOH HOH . 
H 4 HOH A 44 544 105 HOH HOH . 
H 4 HOH A 45 545 109 HOH HOH . 
H 4 HOH A 46 546 110 HOH HOH . 
H 4 HOH A 47 547 111 HOH HOH . 
H 4 HOH A 48 548 121 HOH HOH . 
H 4 HOH A 49 549 123 HOH HOH . 
H 4 HOH A 50 550 124 HOH HOH . 
H 4 HOH A 51 551 126 HOH HOH . 
H 4 HOH A 52 552 128 HOH HOH . 
H 4 HOH A 53 553 129 HOH HOH . 
H 4 HOH A 54 554 131 HOH HOH . 
H 4 HOH A 55 555 136 HOH HOH . 
H 4 HOH A 56 556 138 HOH HOH . 
H 4 HOH A 57 557 139 HOH HOH . 
H 4 HOH A 58 558 142 HOH HOH . 
H 4 HOH A 59 559 143 HOH HOH . 
H 4 HOH A 60 560 144 HOH HOH . 
H 4 HOH A 61 561 147 HOH HOH . 
H 4 HOH A 62 562 148 HOH HOH . 
H 4 HOH A 63 563 152 HOH HOH . 
H 4 HOH A 64 564 156 HOH HOH . 
H 4 HOH A 65 565 157 HOH HOH . 
H 4 HOH A 66 566 159 HOH HOH . 
H 4 HOH A 67 567 161 HOH HOH . 
H 4 HOH A 68 568 163 HOH HOH . 
H 4 HOH A 69 569 165 HOH HOH . 
H 4 HOH A 70 570 168 HOH HOH . 
H 4 HOH A 71 571 170 HOH HOH . 
H 4 HOH A 72 572 172 HOH HOH . 
H 4 HOH A 73 573 173 HOH HOH . 
H 4 HOH A 74 574 175 HOH HOH . 
H 4 HOH A 75 575 176 HOH HOH . 
H 4 HOH A 76 576 177 HOH HOH . 
H 4 HOH A 77 577 178 HOH HOH . 
H 4 HOH A 78 578 179 HOH HOH . 
H 4 HOH A 79 579 180 HOH HOH . 
H 4 HOH A 80 580 181 HOH HOH . 
H 4 HOH A 81 581 182 HOH HOH . 
H 4 HOH A 82 582 183 HOH HOH . 
I 4 HOH B 1 501 185 HOH HOH . 
I 4 HOH B 2 502 187 HOH HOH . 
I 4 HOH B 3 503 10 HOH HOH . 
I 4 HOH B 4 504 11 HOH HOH . 
I 4 HOH B 5 505 14 HOH HOH . 
I 4 HOH B 6 506 18 HOH HOH . 
I 4 HOH B 7 507 20 HOH HOH . 
I 4 HOH B 8 508 22 HOH HOH . 
I 4 HOH B 9 509 25 HOH HOH . 
I 4 HOH B 10 510 26 HOH HOH . 
I 4 HOH B 11 511 27 HOH HOH . 
I 4 HOH B 12 512 31 HOH HOH . 
I 4 HOH B 13 513 32 HOH HOH . 
I 4 HOH B 14 514 36 HOH HOH . 
I 4 HOH B 15 515 38 HOH HOH . 
I 4 HOH B 16 516 40 HOH HOH . 
I 4 HOH B 17 517 41 HOH HOH . 
I 4 HOH B 18 518 43 HOH HOH . 
I 4 HOH B 19 519 44 HOH HOH . 
I 4 HOH B 20 520 46 HOH HOH . 
I 4 HOH B 21 521 50 HOH HOH . 
I 4 HOH B 22 522 52 HOH HOH . 
I 4 HOH B 23 523 57 HOH HOH . 
I 4 HOH B 24 524 59 HOH HOH . 
I 4 HOH B 25 525 62 HOH HOH . 
I 4 HOH B 26 526 65 HOH HOH . 
I 4 HOH B 27 527 70 HOH HOH . 
I 4 HOH B 28 528 71 HOH HOH . 
I 4 HOH B 29 529 77 HOH HOH . 
I 4 HOH B 30 530 80 HOH HOH . 
I 4 HOH B 31 531 82 HOH HOH . 
I 4 HOH B 32 532 83 HOH HOH . 
I 4 HOH B 33 533 86 HOH HOH . 
I 4 HOH B 34 534 88 HOH HOH . 
I 4 HOH B 35 535 89 HOH HOH . 
I 4 HOH B 36 536 91 HOH HOH . 
I 4 HOH B 37 537 92 HOH HOH . 
I 4 HOH B 38 538 93 HOH HOH . 
I 4 HOH B 39 539 94 HOH HOH . 
I 4 HOH B 40 540 95 HOH HOH . 
I 4 HOH B 41 541 96 HOH HOH . 
I 4 HOH B 42 542 99 HOH HOH . 
I 4 HOH B 43 543 103 HOH HOH . 
I 4 HOH B 44 544 104 HOH HOH . 
I 4 HOH B 45 545 106 HOH HOH . 
I 4 HOH B 46 546 107 HOH HOH . 
I 4 HOH B 47 547 108 HOH HOH . 
I 4 HOH B 48 548 112 HOH HOH . 
I 4 HOH B 49 549 113 HOH HOH . 
I 4 HOH B 50 550 114 HOH HOH . 
I 4 HOH B 51 551 115 HOH HOH . 
I 4 HOH B 52 552 118 HOH HOH . 
I 4 HOH B 53 553 119 HOH HOH . 
I 4 HOH B 54 554 122 HOH HOH . 
I 4 HOH B 55 555 130 HOH HOH . 
I 4 HOH B 56 556 132 HOH HOH . 
I 4 HOH B 57 557 133 HOH HOH . 
I 4 HOH B 58 558 134 HOH HOH . 
I 4 HOH B 59 559 135 HOH HOH . 
I 4 HOH B 60 560 140 HOH HOH . 
I 4 HOH B 61 561 145 HOH HOH . 
I 4 HOH B 62 562 149 HOH HOH . 
I 4 HOH B 63 563 150 HOH HOH . 
I 4 HOH B 64 564 151 HOH HOH . 
I 4 HOH B 65 565 153 HOH HOH . 
I 4 HOH B 66 566 154 HOH HOH . 
I 4 HOH B 67 567 155 HOH HOH . 
I 4 HOH B 68 568 158 HOH HOH . 
I 4 HOH B 69 569 160 HOH HOH . 
I 4 HOH B 70 570 162 HOH HOH . 
I 4 HOH B 71 571 164 HOH HOH . 
I 4 HOH B 72 572 166 HOH HOH . 
I 4 HOH B 73 573 167 HOH HOH . 
I 4 HOH B 74 574 169 HOH HOH . 
I 4 HOH B 75 575 174 HOH HOH . 
J 4 HOH C 1 101 184 HOH HOH . 
J 4 HOH C 2 102 8 HOH HOH . 
J 4 HOH C 3 103 9 HOH HOH . 
J 4 HOH C 4 104 47 HOH HOH . 
J 4 HOH C 5 105 53 HOH HOH . 
J 4 HOH C 6 106 56 HOH HOH . 
J 4 HOH C 7 107 61 HOH HOH . 
J 4 HOH C 8 108 67 HOH HOH . 
J 4 HOH C 9 109 78 HOH HOH . 
J 4 HOH C 10 110 117 HOH HOH . 
J 4 HOH C 11 111 141 HOH HOH . 
K 4 HOH D 1 101 21 HOH HOH . 
K 4 HOH D 2 102 24 HOH HOH . 
K 4 HOH D 3 103 30 HOH HOH . 
K 4 HOH D 4 104 63 HOH HOH . 
K 4 HOH D 5 105 68 HOH HOH . 
K 4 HOH D 6 106 73 HOH HOH . 
K 4 HOH D 7 107 84 HOH HOH . 
K 4 HOH D 8 108 97 HOH HOH . 
K 4 HOH D 9 109 116 HOH HOH . 
K 4 HOH D 10 110 120 HOH HOH . 
K 4 HOH D 11 111 125 HOH HOH . 
K 4 HOH D 12 112 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 35.642 21.353 70.343 1 34.29 ? C1 GOL 401 B 1 
HETATM 2 O O1 GOL . . . G 3 34.816 20.999 69.264 1 25.77 ? O1 GOL 401 B 1 
HETATM 3 C C2 GOL . . . G 3 37.026 21.666 69.793 1 33.13 ? C2 GOL 401 B 1 
HETATM 4 O O2 GOL . . . G 3 37.787 20.476 69.757 1 31.43 ? O2 GOL 401 B 1 
HETATM 5 C C3 GOL . . . G 3 37.705 22.732 70.649 1 30.94 ? C3 GOL 401 B 1 
HETATM 6 O O3 GOL . . . G 3 39.008 22.96 70.155 1 33.12 ? O3 GOL 401 B 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#