data_4JOM # _model_server_result.job_id Vj5vamkzsuWH10yDhHQM7A _model_server_result.datetime_utc '2024-11-05 01:20:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1006}' # _entry.id 4JOM # _exptl.entry_id 4JOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JOM _cell.length_a 82.429 _cell.length_b 98.944 _cell.length_c 139.879 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 11 A HIS 10 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 A NE2 HIS 13 A HIS 12 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A OD2 ASP 20 A ASP 19 1_555 E ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 A NE2 HIS 45 A HIS 44 1_555 E ZN ZN . A ZN 1004 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc5 A OD2 ASP 70 A ASP 69 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc6 A NE2 HIS 204 A HIS 203 1_555 E ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc7 C O4 PO4 . A PO4 1002 1_555 E ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4JOM _atom_sites.fract_transf_matrix[1][1] 0.012132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1001 1 PO4 PO4 . C 2 PO4 A 1 1002 2 PO4 PO4 . D 2 PO4 A 1 1003 3 PO4 PO4 . E 3 ZN A 1 1004 1 ZN ZN . F 3 ZN A 1 1005 2 ZN ZN . G 4 GOL A 1 1006 1 GOL GOL . H 5 HOH A 1 1101 1 HOH HOH . H 5 HOH A 2 1102 2 HOH HOH . H 5 HOH A 3 1103 3 HOH HOH . H 5 HOH A 4 1104 4 HOH HOH . H 5 HOH A 5 1105 5 HOH HOH . H 5 HOH A 6 1106 6 HOH HOH . H 5 HOH A 7 1107 7 HOH HOH . H 5 HOH A 8 1108 8 HOH HOH . H 5 HOH A 9 1109 10 HOH HOH . H 5 HOH A 10 1110 11 HOH HOH . H 5 HOH A 11 1111 12 HOH HOH . H 5 HOH A 12 1112 13 HOH HOH . H 5 HOH A 13 1113 14 HOH HOH . H 5 HOH A 14 1114 15 HOH HOH . H 5 HOH A 15 1115 16 HOH HOH . H 5 HOH A 16 1116 17 HOH HOH . H 5 HOH A 17 1117 18 HOH HOH . H 5 HOH A 18 1118 19 HOH HOH . H 5 HOH A 19 1119 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 18.142 11.185 12.94 1 72.48 ? C1 GOL 1006 A 1 HETATM 2 O O1 GOL . . . G 4 17.793 11.111 11.573 1 52.38 ? O1 GOL 1006 A 1 HETATM 3 C C2 GOL . . . G 4 18.192 12.63 13.438 1 72.25 ? C2 GOL 1006 A 1 HETATM 4 O O2 GOL . . . G 4 17.609 12.707 14.724 1 61.38 ? O2 GOL 1006 A 1 HETATM 5 C C3 GOL . . . G 4 19.639 13.113 13.471 1 65.09 ? C3 GOL 1006 A 1 HETATM 6 O O3 GOL . . . G 4 19.704 14.488 13.165 1 53.15 ? O3 GOL 1006 A 1 HETATM 7 H H11 GOL . . . G 4 19.116 10.719 13.089 1 86.97 ? H11 GOL 1006 A 1 HETATM 8 H H12 GOL . . . G 4 17.413 10.627 13.529 1 86.97 ? H12 GOL 1006 A 1 HETATM 9 H HO1 GOL . . . G 4 17.835 10.178 11.276 1 62.85 ? HO1 GOL 1006 A 1 HETATM 10 H H2 GOL . . . G 4 17.632 13.256 12.743 1 86.7 ? H2 GOL 1006 A 1 HETATM 11 H HO2 GOL . . . G 4 18.124 12.155 15.349 1 73.65 ? HO2 GOL 1006 A 1 HETATM 12 H H31 GOL . . . G 4 20.23 12.55 12.748 1 78.11 ? H31 GOL 1006 A 1 HETATM 13 H H32 GOL . . . G 4 20.061 12.939 14.46 1 78.11 ? H32 GOL 1006 A 1 HETATM 14 H HO3 GOL . . . G 4 20.29 14.939 13.808 1 63.78 ? HO3 GOL 1006 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #