data_4JON # _model_server_result.job_id 6LoVI5x-GegqmWSrBUoO3w _model_server_result.datetime_utc '2025-01-13 02:58:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1501}' # _entry.id 4JON # _exptl.entry_id 4JON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JON _cell.length_a 95.04 _cell.length_b 183.332 _cell.length_c 97.268 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JON _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G 1 1 B,F,H 2 1 C,I 3 1 D,J 4 1 E,K 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4JON _atom_sites.fract_transf_matrix[1][1] 0.010522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 GOL B 1 1501 1501 GOL GOL . G 3 HOH A 1 201 1510 HOH HOH . G 3 HOH A 2 202 1515 HOH HOH . G 3 HOH A 3 203 1518 HOH HOH . G 3 HOH A 4 204 1519 HOH HOH . G 3 HOH A 5 205 1533 HOH HOH . G 3 HOH A 6 206 1534 HOH HOH . G 3 HOH A 7 207 1538 HOH HOH . G 3 HOH A 8 208 1540 HOH HOH . G 3 HOH A 9 209 1543 HOH HOH . G 3 HOH A 10 210 1547 HOH HOH . G 3 HOH A 11 211 1548 HOH HOH . G 3 HOH A 12 212 1574 HOH HOH . G 3 HOH A 13 213 1575 HOH HOH . G 3 HOH A 14 214 1576 HOH HOH . G 3 HOH A 15 215 1577 HOH HOH . G 3 HOH A 16 216 1578 HOH HOH . G 3 HOH A 17 217 1583 HOH HOH . G 3 HOH A 18 218 1593 HOH HOH . G 3 HOH A 19 219 1598 HOH HOH . G 3 HOH A 20 220 1604 HOH HOH . G 3 HOH A 21 221 1608 HOH HOH . G 3 HOH A 22 222 1619 HOH HOH . G 3 HOH A 23 223 1620 HOH HOH . G 3 HOH A 24 224 1625 HOH HOH . G 3 HOH A 25 225 1640 HOH HOH . G 3 HOH A 26 226 1642 HOH HOH . G 3 HOH A 27 227 1644 HOH HOH . G 3 HOH A 28 228 1645 HOH HOH . G 3 HOH A 29 229 1651 HOH HOH . G 3 HOH A 30 230 1653 HOH HOH . G 3 HOH A 31 231 1655 HOH HOH . G 3 HOH A 32 232 1657 HOH HOH . G 3 HOH A 33 233 1659 HOH HOH . G 3 HOH A 34 234 1660 HOH HOH . G 3 HOH A 35 235 1662 HOH HOH . G 3 HOH A 36 236 1664 HOH HOH . G 3 HOH A 37 237 1669 HOH HOH . G 3 HOH A 38 238 1674 HOH HOH . G 3 HOH A 39 239 1678 HOH HOH . G 3 HOH A 40 240 1679 HOH HOH . G 3 HOH A 41 241 1688 HOH HOH . G 3 HOH A 42 242 1696 HOH HOH . G 3 HOH A 43 243 1697 HOH HOH . G 3 HOH A 44 244 1699 HOH HOH . G 3 HOH A 45 245 1705 HOH HOH . G 3 HOH A 46 246 1710 HOH HOH . G 3 HOH A 47 247 1721 HOH HOH . G 3 HOH A 48 248 1722 HOH HOH . G 3 HOH A 49 249 1726 HOH HOH . G 3 HOH A 50 250 1729 HOH HOH . G 3 HOH A 51 251 1738 HOH HOH . G 3 HOH A 52 252 1747 HOH HOH . G 3 HOH A 53 253 1748 HOH HOH . G 3 HOH A 54 254 1756 HOH HOH . G 3 HOH A 55 255 1762 HOH HOH . G 3 HOH A 56 256 1764 HOH HOH . G 3 HOH A 57 257 1771 HOH HOH . G 3 HOH A 58 258 1774 HOH HOH . G 3 HOH A 59 259 1775 HOH HOH . G 3 HOH A 60 260 1776 HOH HOH . G 3 HOH A 61 261 1784 HOH HOH . G 3 HOH A 62 262 1785 HOH HOH . G 3 HOH A 63 263 1789 HOH HOH . G 3 HOH A 64 264 1790 HOH HOH . G 3 HOH A 65 265 1791 HOH HOH . G 3 HOH A 66 266 1792 HOH HOH . G 3 HOH A 67 267 1793 HOH HOH . H 3 HOH B 1 1601 1503 HOH HOH . H 3 HOH B 2 1602 1504 HOH HOH . H 3 HOH B 3 1603 1508 HOH HOH . H 3 HOH B 4 1604 1511 HOH HOH . H 3 HOH B 5 1605 1512 HOH HOH . H 3 HOH B 6 1606 1513 HOH HOH . H 3 HOH B 7 1607 1514 HOH HOH . H 3 HOH B 8 1608 1517 HOH HOH . H 3 HOH B 9 1609 1520 HOH HOH . H 3 HOH B 10 1610 1524 HOH HOH . H 3 HOH B 11 1611 1527 HOH HOH . H 3 HOH B 12 1612 1529 HOH HOH . H 3 HOH B 13 1613 1535 HOH HOH . H 3 HOH B 14 1614 1537 HOH HOH . H 3 HOH B 15 1615 1542 HOH HOH . H 3 HOH B 16 1616 1544 HOH HOH . H 3 HOH B 17 1617 1545 HOH HOH . H 3 HOH B 18 1618 1554 HOH HOH . H 3 HOH B 19 1619 1561 HOH HOH . H 3 HOH B 20 1620 1562 HOH HOH . H 3 HOH B 21 1621 1563 HOH HOH . H 3 HOH B 22 1622 1566 HOH HOH . H 3 HOH B 23 1623 1568 HOH HOH . H 3 HOH B 24 1624 1569 HOH HOH . H 3 HOH B 25 1625 1570 HOH HOH . H 3 HOH B 26 1626 1573 HOH HOH . H 3 HOH B 27 1627 1585 HOH HOH . H 3 HOH B 28 1628 1587 HOH HOH . H 3 HOH B 29 1629 1589 HOH HOH . H 3 HOH B 30 1630 1590 HOH HOH . H 3 HOH B 31 1631 1594 HOH HOH . H 3 HOH B 32 1632 1595 HOH HOH . H 3 HOH B 33 1633 1596 HOH HOH . H 3 HOH B 34 1634 1599 HOH HOH . H 3 HOH B 35 1635 1603 HOH HOH . H 3 HOH B 36 1636 1605 HOH HOH . H 3 HOH B 37 1637 1606 HOH HOH . H 3 HOH B 38 1638 1610 HOH HOH . H 3 HOH B 39 1639 1611 HOH HOH . H 3 HOH B 40 1640 1614 HOH HOH . H 3 HOH B 41 1641 1621 HOH HOH . H 3 HOH B 42 1642 1622 HOH HOH . H 3 HOH B 43 1643 1628 HOH HOH . H 3 HOH B 44 1644 1647 HOH HOH . H 3 HOH B 45 1645 1652 HOH HOH . H 3 HOH B 46 1646 1654 HOH HOH . H 3 HOH B 47 1647 1661 HOH HOH . H 3 HOH B 48 1648 1667 HOH HOH . H 3 HOH B 49 1649 1668 HOH HOH . H 3 HOH B 50 1650 1671 HOH HOH . H 3 HOH B 51 1651 1673 HOH HOH . H 3 HOH B 52 1652 1686 HOH HOH . H 3 HOH B 53 1653 1687 HOH HOH . H 3 HOH B 54 1654 1689 HOH HOH . H 3 HOH B 55 1655 1690 HOH HOH . H 3 HOH B 56 1656 1693 HOH HOH . H 3 HOH B 57 1657 1698 HOH HOH . H 3 HOH B 58 1658 1704 HOH HOH . H 3 HOH B 59 1659 1707 HOH HOH . H 3 HOH B 60 1660 1709 HOH HOH . H 3 HOH B 61 1661 1716 HOH HOH . H 3 HOH B 62 1662 1719 HOH HOH . H 3 HOH B 63 1663 1720 HOH HOH . H 3 HOH B 64 1664 1723 HOH HOH . H 3 HOH B 65 1665 1732 HOH HOH . H 3 HOH B 66 1666 1736 HOH HOH . H 3 HOH B 67 1667 1739 HOH HOH . H 3 HOH B 68 1668 1741 HOH HOH . H 3 HOH B 69 1669 1743 HOH HOH . H 3 HOH B 70 1670 1744 HOH HOH . H 3 HOH B 71 1671 1745 HOH HOH . H 3 HOH B 72 1672 1761 HOH HOH . H 3 HOH B 73 1673 1765 HOH HOH . H 3 HOH B 74 1674 1770 HOH HOH . H 3 HOH B 75 1675 1772 HOH HOH . H 3 HOH B 76 1676 1773 HOH HOH . H 3 HOH B 77 1677 1779 HOH HOH . H 3 HOH B 78 1678 1781 HOH HOH . H 3 HOH B 79 1679 1786 HOH HOH . H 3 HOH B 80 1680 1788 HOH HOH . H 3 HOH B 81 1681 1796 HOH HOH . H 3 HOH B 82 1682 1797 HOH HOH . I 3 HOH C 1 201 1502 HOH HOH . I 3 HOH C 2 202 1505 HOH HOH . I 3 HOH C 3 203 1506 HOH HOH . I 3 HOH C 4 204 1507 HOH HOH . I 3 HOH C 5 205 1509 HOH HOH . I 3 HOH C 6 206 1516 HOH HOH . I 3 HOH C 7 207 1521 HOH HOH . I 3 HOH C 8 208 1531 HOH HOH . I 3 HOH C 9 209 1532 HOH HOH . I 3 HOH C 10 210 1539 HOH HOH . I 3 HOH C 11 211 1546 HOH HOH . I 3 HOH C 12 212 1549 HOH HOH . I 3 HOH C 13 213 1551 HOH HOH . I 3 HOH C 14 214 1552 HOH HOH . I 3 HOH C 15 215 1555 HOH HOH . I 3 HOH C 16 216 1556 HOH HOH . I 3 HOH C 17 217 1560 HOH HOH . I 3 HOH C 18 218 1571 HOH HOH . I 3 HOH C 19 219 1572 HOH HOH . I 3 HOH C 20 220 1579 HOH HOH . I 3 HOH C 21 221 1581 HOH HOH . I 3 HOH C 22 222 1584 HOH HOH . I 3 HOH C 23 223 1588 HOH HOH . I 3 HOH C 24 224 1591 HOH HOH . I 3 HOH C 25 225 1592 HOH HOH . I 3 HOH C 26 226 1597 HOH HOH . I 3 HOH C 27 227 1609 HOH HOH . I 3 HOH C 28 228 1615 HOH HOH . I 3 HOH C 29 229 1616 HOH HOH . I 3 HOH C 30 230 1617 HOH HOH . I 3 HOH C 31 231 1618 HOH HOH . I 3 HOH C 32 232 1623 HOH HOH . I 3 HOH C 33 233 1624 HOH HOH . I 3 HOH C 34 234 1626 HOH HOH . I 3 HOH C 35 235 1630 HOH HOH . I 3 HOH C 36 236 1631 HOH HOH . I 3 HOH C 37 237 1632 HOH HOH . I 3 HOH C 38 238 1634 HOH HOH . I 3 HOH C 39 239 1643 HOH HOH . I 3 HOH C 40 240 1648 HOH HOH . I 3 HOH C 41 241 1650 HOH HOH . I 3 HOH C 42 242 1656 HOH HOH . I 3 HOH C 43 243 1663 HOH HOH . I 3 HOH C 44 244 1665 HOH HOH . I 3 HOH C 45 245 1666 HOH HOH . I 3 HOH C 46 246 1670 HOH HOH . I 3 HOH C 47 247 1677 HOH HOH . I 3 HOH C 48 248 1685 HOH HOH . I 3 HOH C 49 249 1694 HOH HOH . I 3 HOH C 50 250 1695 HOH HOH . I 3 HOH C 51 251 1700 HOH HOH . I 3 HOH C 52 252 1713 HOH HOH . I 3 HOH C 53 253 1714 HOH HOH . I 3 HOH C 54 254 1727 HOH HOH . I 3 HOH C 55 255 1730 HOH HOH . I 3 HOH C 56 256 1746 HOH HOH . I 3 HOH C 57 257 1749 HOH HOH . I 3 HOH C 58 258 1751 HOH HOH . I 3 HOH C 59 259 1755 HOH HOH . I 3 HOH C 60 260 1757 HOH HOH . I 3 HOH C 61 261 1763 HOH HOH . I 3 HOH C 62 262 1769 HOH HOH . I 3 HOH C 63 263 1782 HOH HOH . I 3 HOH C 64 264 1783 HOH HOH . I 3 HOH C 65 265 1787 HOH HOH . I 3 HOH C 66 266 1794 HOH HOH . I 3 HOH C 67 267 1795 HOH HOH . J 3 HOH D 1 201 1522 HOH HOH . J 3 HOH D 2 202 1523 HOH HOH . J 3 HOH D 3 203 1525 HOH HOH . J 3 HOH D 4 204 1526 HOH HOH . J 3 HOH D 5 205 1550 HOH HOH . J 3 HOH D 6 206 1553 HOH HOH . J 3 HOH D 7 207 1557 HOH HOH . J 3 HOH D 8 208 1558 HOH HOH . J 3 HOH D 9 209 1559 HOH HOH . J 3 HOH D 10 210 1564 HOH HOH . J 3 HOH D 11 211 1567 HOH HOH . J 3 HOH D 12 212 1580 HOH HOH . J 3 HOH D 13 213 1586 HOH HOH . J 3 HOH D 14 214 1602 HOH HOH . J 3 HOH D 15 215 1607 HOH HOH . J 3 HOH D 16 216 1612 HOH HOH . J 3 HOH D 17 217 1613 HOH HOH . J 3 HOH D 18 218 1627 HOH HOH . J 3 HOH D 19 219 1633 HOH HOH . J 3 HOH D 20 220 1637 HOH HOH . J 3 HOH D 21 221 1639 HOH HOH . J 3 HOH D 22 222 1649 HOH HOH . J 3 HOH D 23 223 1658 HOH HOH . J 3 HOH D 24 224 1672 HOH HOH . J 3 HOH D 25 225 1675 HOH HOH . J 3 HOH D 26 226 1682 HOH HOH . J 3 HOH D 27 227 1683 HOH HOH . J 3 HOH D 28 228 1684 HOH HOH . J 3 HOH D 29 229 1691 HOH HOH . J 3 HOH D 30 230 1706 HOH HOH . J 3 HOH D 31 231 1708 HOH HOH . J 3 HOH D 32 232 1711 HOH HOH . J 3 HOH D 33 233 1715 HOH HOH . J 3 HOH D 34 234 1717 HOH HOH . J 3 HOH D 35 235 1718 HOH HOH . J 3 HOH D 36 236 1724 HOH HOH . J 3 HOH D 37 237 1725 HOH HOH . J 3 HOH D 38 238 1733 HOH HOH . J 3 HOH D 39 239 1734 HOH HOH . J 3 HOH D 40 240 1737 HOH HOH . J 3 HOH D 41 241 1740 HOH HOH . J 3 HOH D 42 242 1742 HOH HOH . J 3 HOH D 43 243 1752 HOH HOH . J 3 HOH D 44 244 1753 HOH HOH . J 3 HOH D 45 245 1759 HOH HOH . J 3 HOH D 46 246 1777 HOH HOH . J 3 HOH D 47 247 1778 HOH HOH . J 3 HOH D 48 248 1780 HOH HOH . K 3 HOH E 1 201 1528 HOH HOH . K 3 HOH E 2 202 1530 HOH HOH . K 3 HOH E 3 203 1536 HOH HOH . K 3 HOH E 4 204 1541 HOH HOH . K 3 HOH E 5 205 1565 HOH HOH . K 3 HOH E 6 206 1582 HOH HOH . K 3 HOH E 7 207 1600 HOH HOH . K 3 HOH E 8 208 1601 HOH HOH . K 3 HOH E 9 209 1629 HOH HOH . K 3 HOH E 10 210 1635 HOH HOH . K 3 HOH E 11 211 1636 HOH HOH . K 3 HOH E 12 212 1638 HOH HOH . K 3 HOH E 13 213 1641 HOH HOH . K 3 HOH E 14 214 1646 HOH HOH . K 3 HOH E 15 215 1676 HOH HOH . K 3 HOH E 16 216 1680 HOH HOH . K 3 HOH E 17 217 1681 HOH HOH . K 3 HOH E 18 218 1692 HOH HOH . K 3 HOH E 19 219 1701 HOH HOH . K 3 HOH E 20 220 1702 HOH HOH . K 3 HOH E 21 221 1703 HOH HOH . K 3 HOH E 22 222 1712 HOH HOH . K 3 HOH E 23 223 1728 HOH HOH . K 3 HOH E 24 224 1731 HOH HOH . K 3 HOH E 25 225 1735 HOH HOH . K 3 HOH E 26 226 1750 HOH HOH . K 3 HOH E 27 227 1754 HOH HOH . K 3 HOH E 28 228 1758 HOH HOH . K 3 HOH E 29 229 1760 HOH HOH . K 3 HOH E 30 230 1766 HOH HOH . K 3 HOH E 31 231 1767 HOH HOH . K 3 HOH E 32 232 1768 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 21.296 18.089 28.249 1 69.82 ? C1 GOL 1501 B 1 HETATM 2 O O1 GOL . . . F 2 22.007 17.958 27.02 1 67.82 ? O1 GOL 1501 B 1 HETATM 3 C C2 GOL . . . F 2 21.89 17.252 29.362 1 70.45 ? C2 GOL 1501 B 1 HETATM 4 O O2 GOL . . . F 2 23.26 17.612 29.587 1 71.64 ? O2 GOL 1501 B 1 HETATM 5 C C3 GOL . . . F 2 21.803 15.775 29.058 1 67.98 ? C3 GOL 1501 B 1 HETATM 6 O O3 GOL . . . F 2 20.501 15.419 28.627 1 64.85 ? O3 GOL 1501 B 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #