data_4JP8
#
_model_server_result.job_id            phy_51Mwu7E6_RO9W7umRg 
_model_server_result.datetime_utc      '2024-10-19 17:19:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    4JP8 
#
_exptl.entry_id    4JP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JP8 
_cell.length_a            77.323 
_cell.length_b            92.498 
_cell.length_c            122.222 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 84 A GLN 84 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc2 A O VAL 108 A VAL 108 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc3 A OE1 GLN 110 A GLN 110 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc4 A OD1 ASP 124 A ASP 124 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc5 A OD2 ASP 124 A ASP 124 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc6 A O LEU 164 A LEU 164 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc7 A OD1 ASN 166 A ASN 166 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? 
metalc ? metalc8 A O ILE 168 A ILE 168 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc9 A O VAL 170 A VAL 170 1_555 B CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc10 A O LEU 205 A LEU 205 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc11 A OD1 ASP 208 A ASP 208 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? 
metalc ? metalc12 A O ALA 211 A ALA 211 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.172 ? 
metalc ? metalc13 A OD1 ASP 212 A ASP 212 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc14 A OD2 ASP 214 A ASP 214 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc15 A OD1 ASP 214 A ASP 214 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc16 A OD1 ASP 214 A ASP 214 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc17 A OD1 ASP 216 A ASP 216 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc18 A OD2 ASP 216 A ASP 216 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc19 A O ILE 218 A ILE 218 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc20 A OD1 ASP 222 A ASP 222 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc21 A OD1 ASP 222 A ASP 222 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc22 A OD2 ASP 222 A ASP 222 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
metalc ? metalc23 A OD2 ASP 224 A ASP 224 1_555 E CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc24 A OD2 ASP 225 A ASP 225 1_555 D CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc25 A OD2 ASP 226 A ASP 226 1_555 C CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc26 A O ALA 227 A ALA 227 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc27 A OE1 GLU 229 A GLU 229 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc28 A OE2 GLU 229 A GLU 229 1_555 F CA CA . A CA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc29 A OD1 ASP 372 A ASP 372 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc30 A O LEU 373 A LEU 373 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc31 A O PRO 375 A PRO 375 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc32 A O GLY 377 A GLY 377 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc33 A OD1 ASP 379 A ASP 379 1_555 G CA CA . A CA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? 
metalc ? metalc34 F CA CA . A CA 705 1_555 H O HOH . A HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4JP8 
_atom_sites.fract_transf_matrix[1][1]    0.012933 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010811 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008182 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 701 701 CA CA . 
C 2 CA A 1 702 702 CA CA . 
D 2 CA A 1 703 703 CA CA . 
E 2 CA A 1 704 704 CA CA . 
F 2 CA A 1 705 705 CA CA . 
G 2 CA A 1 706 706 CA CA . 
H 3 HOH A 1 801 1 HOH HOH . 
H 3 HOH A 2 802 2 HOH HOH . 
H 3 HOH A 3 803 3 HOH HOH . 
H 3 HOH A 4 804 4 HOH HOH . 
H 3 HOH A 5 805 5 HOH HOH . 
H 3 HOH A 6 806 6 HOH HOH . 
H 3 HOH A 7 807 7 HOH HOH . 
H 3 HOH A 8 808 9 HOH HOH . 
H 3 HOH A 9 809 10 HOH HOH . 
H 3 HOH A 10 810 11 HOH HOH . 
H 3 HOH A 11 811 12 HOH HOH . 
H 3 HOH A 12 812 13 HOH HOH . 
H 3 HOH A 13 813 14 HOH HOH . 
H 3 HOH A 14 814 15 HOH HOH . 
H 3 HOH A 15 815 16 HOH HOH . 
H 3 HOH A 16 816 17 HOH HOH . 
H 3 HOH A 17 817 18 HOH HOH . 
H 3 HOH A 18 818 19 HOH HOH . 
H 3 HOH A 19 819 20 HOH HOH . 
H 3 HOH A 20 820 21 HOH HOH . 
H 3 HOH A 21 821 22 HOH HOH . 
H 3 HOH A 22 822 25 HOH HOH . 
H 3 HOH A 23 823 26 HOH HOH . 
H 3 HOH A 24 824 27 HOH HOH . 
H 3 HOH A 25 825 28 HOH HOH . 
H 3 HOH A 26 826 29 HOH HOH . 
H 3 HOH A 27 827 30 HOH HOH . 
H 3 HOH A 28 828 34 HOH HOH . 
H 3 HOH A 29 829 35 HOH HOH . 
H 3 HOH A 30 830 36 HOH HOH . 
H 3 HOH A 31 831 37 HOH HOH . 
H 3 HOH A 32 832 38 HOH HOH . 
H 3 HOH A 33 833 39 HOH HOH . 
H 3 HOH A 34 834 40 HOH HOH . 
H 3 HOH A 35 835 41 HOH HOH . 
H 3 HOH A 36 836 43 HOH HOH . 
H 3 HOH A 37 837 44 HOH HOH . 
H 3 HOH A 38 838 45 HOH HOH . 
H 3 HOH A 39 839 46 HOH HOH . 
H 3 HOH A 40 840 47 HOH HOH . 
H 3 HOH A 41 841 48 HOH HOH . 
H 3 HOH A 42 842 49 HOH HOH . 
H 3 HOH A 43 843 50 HOH HOH . 
H 3 HOH A 44 844 51 HOH HOH . 
H 3 HOH A 45 845 52 HOH HOH . 
H 3 HOH A 46 846 53 HOH HOH . 
H 3 HOH A 47 847 55 HOH HOH . 
H 3 HOH A 48 848 56 HOH HOH . 
H 3 HOH A 49 849 57 HOH HOH . 
H 3 HOH A 50 850 58 HOH HOH . 
H 3 HOH A 51 851 59 HOH HOH . 
H 3 HOH A 52 852 60 HOH HOH . 
H 3 HOH A 53 853 61 HOH HOH . 
H 3 HOH A 54 854 62 HOH HOH . 
H 3 HOH A 55 855 64 HOH HOH . 
H 3 HOH A 56 856 66 HOH HOH . 
H 3 HOH A 57 857 67 HOH HOH . 
H 3 HOH A 58 858 68 HOH HOH . 
H 3 HOH A 59 859 70 HOH HOH . 
H 3 HOH A 60 860 71 HOH HOH . 
H 3 HOH A 61 861 72 HOH HOH . 
H 3 HOH A 62 862 73 HOH HOH . 
H 3 HOH A 63 863 75 HOH HOH . 
H 3 HOH A 64 864 76 HOH HOH . 
H 3 HOH A 65 865 77 HOH HOH . 
H 3 HOH A 66 866 78 HOH HOH . 
H 3 HOH A 67 867 79 HOH HOH . 
H 3 HOH A 68 868 80 HOH HOH . 
H 3 HOH A 69 869 81 HOH HOH . 
H 3 HOH A 70 870 82 HOH HOH . 
H 3 HOH A 71 871 83 HOH HOH . 
H 3 HOH A 72 872 85 HOH HOH . 
H 3 HOH A 73 873 87 HOH HOH . 
H 3 HOH A 74 874 88 HOH HOH . 
H 3 HOH A 75 875 89 HOH HOH . 
H 3 HOH A 76 876 90 HOH HOH . 
H 3 HOH A 77 877 91 HOH HOH . 
H 3 HOH A 78 878 92 HOH HOH . 
H 3 HOH A 79 879 93 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -27.765 
_atom_site.Cartn_y               -33.657 
_atom_site.Cartn_z               -32.215 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        55.04 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           702 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#