data_4JPH # _model_server_result.job_id M6j7qzSciFAeg7RYg_QH-Q _model_server_result.datetime_utc '2025-08-31 13:50:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":204}' # _entry.id 4JPH # _exptl.entry_id 4JPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.5 _cell.angle_gamma 90 _cell.entry_id 4JPH _cell.length_a 73.312 _cell.length_b 65.558 _cell.length_c 85.077 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,W,X 1 1 C,D,P,Q,R,S,T,U,V,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 O N N ? 3 S N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 73 1_555 A SG CYS 103 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 67 A CYS 87 1_555 A SG CYS 117 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 77 A CYS 97 1_555 A SG CYS 135 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 81 A CYS 101 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 B SG CYS 53 B CYS 73 1_555 B SG CYS 103 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 B SG CYS 67 B CYS 87 1_555 B SG CYS 117 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 B SG CYS 77 B CYS 97 1_555 B SG CYS 135 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 B SG CYS 81 B CYS 101 1_555 B SG CYS 137 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf9 C SG CYS 53 C CYS 73 1_555 C SG CYS 103 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf10 C SG CYS 67 C CYS 87 1_555 C SG CYS 117 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 C SG CYS 77 C CYS 97 1_555 C SG CYS 135 C CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 C SG CYS 81 C CYS 101 1_555 C SG CYS 137 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf13 D SG CYS 53 D CYS 73 1_555 D SG CYS 103 D CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 D SG CYS 67 D CYS 87 1_555 D SG CYS 117 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf15 D SG CYS 77 D CYS 97 1_555 D SG CYS 135 D CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 D SG CYS 81 D CYS 101 1_555 D SG CYS 137 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A SG CYS 100 A CYS 120 1_555 J SG2 GSH . A GSH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? covale ? covale2 B SG CYS 100 B CYS 120 1_555 O SG2 GSH . B GSH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? covale ? covale3 C SG CYS 100 C CYS 120 1_555 S SG2 GSH . C GSH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? covale ? covale4 D SG CYS 100 D CYS 120 1_555 V SG2 GSH . D GSH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 162 n n N1 HN11 GSH sing 163 n n N1 HN12 GSH sing 164 n n CA1 C1 GSH sing 165 n n CA1 CB1 GSH sing 166 n n CA1 HA1 GSH sing 167 n n C1 O11 GSH doub 168 n n C1 O12 GSH sing 169 n n O12 H12 GSH sing 170 n n CB1 CG1 GSH sing 171 n n CB1 HB12 GSH sing 172 n n CB1 HB13 GSH sing 173 n n CG1 CD1 GSH sing 174 n n CG1 HG12 GSH sing 175 n n CG1 HG13 GSH sing 176 n n CD1 OE1 GSH doub 177 n n CD1 N2 GSH sing 178 n n N2 CA2 GSH sing 179 n n N2 HN2 GSH sing 180 n n CA2 C2 GSH sing 181 n n CA2 CB2 GSH sing 182 n n CA2 HA2 GSH sing 183 n n C2 O2 GSH doub 184 n n C2 N3 GSH sing 185 n n CB2 SG2 GSH sing 186 n n CB2 HB22 GSH sing 187 n n CB2 HB23 GSH sing 188 n n SG2 HSG GSH sing 189 n n N3 CA3 GSH sing 190 n n N3 HN3 GSH sing 191 n n CA3 C3 GSH sing 192 n n CA3 HA31 GSH sing 193 n n CA3 HA32 GSH sing 194 n n C3 O31 GSH doub 195 n n C3 O32 GSH sing 196 n n O32 H32 GSH sing 197 n n # _atom_sites.entry_id 4JPH _atom_sites.fract_transf_matrix[1][1] 0.01364 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003783 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 201 4 GOL GOL . F 2 GOL A 1 202 5 GOL GOL . G 2 GOL A 1 203 6 GOL GOL . H 2 GOL A 1 204 8 GOL GOL . I 2 GOL A 1 205 14 GOL GOL . J 3 GSH A 1 206 1 GSH GSH . K 4 CIT B 1 201 1 CIT CIT . L 2 GOL B 1 202 2 GOL GOL . M 2 GOL B 1 203 7 GOL GOL . N 2 GOL B 1 204 15 GOL GOL . O 3 GSH B 1 205 2 GSH GSH . P 2 GOL C 1 201 1 GOL GOL . Q 2 GOL C 1 202 10 GOL GOL . R 2 GOL C 1 203 12 GOL GOL . S 3 GSH C 1 204 3 GSH GSH . T 4 CIT D 1 201 2 CIT CIT . U 2 GOL D 1 202 11 GOL GOL . V 3 GSH D 1 203 4 GSH GSH . W 5 HOH A 1 301 1 HOH HOH . W 5 HOH A 2 302 3 HOH HOH . W 5 HOH A 3 303 4 HOH HOH . W 5 HOH A 4 304 6 HOH HOH . W 5 HOH A 5 305 10 HOH HOH . W 5 HOH A 6 306 11 HOH HOH . W 5 HOH A 7 307 14 HOH HOH . W 5 HOH A 8 308 17 HOH HOH . W 5 HOH A 9 309 25 HOH HOH . W 5 HOH A 10 310 26 HOH HOH . W 5 HOH A 11 311 36 HOH HOH . W 5 HOH A 12 312 38 HOH HOH . W 5 HOH A 13 313 39 HOH HOH . W 5 HOH A 14 314 41 HOH HOH . W 5 HOH A 15 315 45 HOH HOH . W 5 HOH A 16 316 52 HOH HOH . W 5 HOH A 17 317 53 HOH HOH . W 5 HOH A 18 318 54 HOH HOH . W 5 HOH A 19 319 58 HOH HOH . W 5 HOH A 20 320 71 HOH HOH . W 5 HOH A 21 321 72 HOH HOH . W 5 HOH A 22 322 74 HOH HOH . W 5 HOH A 23 323 98 HOH HOH . W 5 HOH A 24 324 100 HOH HOH . W 5 HOH A 25 325 101 HOH HOH . W 5 HOH A 26 326 103 HOH HOH . W 5 HOH A 27 327 105 HOH HOH . W 5 HOH A 28 328 111 HOH HOH . W 5 HOH A 29 329 114 HOH HOH . W 5 HOH A 30 330 125 HOH HOH . W 5 HOH A 31 331 126 HOH HOH . W 5 HOH A 32 332 128 HOH HOH . W 5 HOH A 33 333 130 HOH HOH . W 5 HOH A 34 334 138 HOH HOH . W 5 HOH A 35 335 141 HOH HOH . W 5 HOH A 36 336 150 HOH HOH . W 5 HOH A 37 337 154 HOH HOH . W 5 HOH A 38 338 167 HOH HOH . W 5 HOH A 39 339 168 HOH HOH . W 5 HOH A 40 340 173 HOH HOH . W 5 HOH A 41 341 175 HOH HOH . W 5 HOH A 42 342 179 HOH HOH . W 5 HOH A 43 343 180 HOH HOH . W 5 HOH A 44 344 184 HOH HOH . W 5 HOH A 45 345 187 HOH HOH . W 5 HOH A 46 346 189 HOH HOH . W 5 HOH A 47 347 190 HOH HOH . W 5 HOH A 48 348 191 HOH HOH . W 5 HOH A 49 349 192 HOH HOH . X 5 HOH B 1 301 2 HOH HOH . X 5 HOH B 2 302 5 HOH HOH . X 5 HOH B 3 303 7 HOH HOH . X 5 HOH B 4 304 9 HOH HOH . X 5 HOH B 5 305 15 HOH HOH . X 5 HOH B 6 306 16 HOH HOH . X 5 HOH B 7 307 18 HOH HOH . X 5 HOH B 8 308 19 HOH HOH . X 5 HOH B 9 309 23 HOH HOH . X 5 HOH B 10 310 27 HOH HOH . X 5 HOH B 11 311 28 HOH HOH . X 5 HOH B 12 312 30 HOH HOH . X 5 HOH B 13 313 34 HOH HOH . X 5 HOH B 14 314 40 HOH HOH . X 5 HOH B 15 315 42 HOH HOH . X 5 HOH B 16 316 44 HOH HOH . X 5 HOH B 17 317 88 HOH HOH . X 5 HOH B 18 318 94 HOH HOH . X 5 HOH B 19 319 95 HOH HOH . X 5 HOH B 20 320 102 HOH HOH . X 5 HOH B 21 321 106 HOH HOH . X 5 HOH B 22 322 107 HOH HOH . X 5 HOH B 23 323 108 HOH HOH . X 5 HOH B 24 324 110 HOH HOH . X 5 HOH B 25 325 113 HOH HOH . X 5 HOH B 26 326 120 HOH HOH . X 5 HOH B 27 327 131 HOH HOH . X 5 HOH B 28 328 137 HOH HOH . X 5 HOH B 29 329 142 HOH HOH . X 5 HOH B 30 330 146 HOH HOH . X 5 HOH B 31 331 149 HOH HOH . X 5 HOH B 32 332 169 HOH HOH . X 5 HOH B 33 333 174 HOH HOH . X 5 HOH B 34 334 177 HOH HOH . X 5 HOH B 35 335 178 HOH HOH . X 5 HOH B 36 336 181 HOH HOH . X 5 HOH B 37 337 182 HOH HOH . Y 5 HOH C 1 301 22 HOH HOH . Y 5 HOH C 2 302 29 HOH HOH . Y 5 HOH C 3 303 55 HOH HOH . Y 5 HOH C 4 304 56 HOH HOH . Y 5 HOH C 5 305 77 HOH HOH . Y 5 HOH C 6 306 92 HOH HOH . Y 5 HOH C 7 307 93 HOH HOH . Y 5 HOH C 8 308 127 HOH HOH . Y 5 HOH C 9 309 129 HOH HOH . Y 5 HOH C 10 310 134 HOH HOH . Y 5 HOH C 11 311 136 HOH HOH . Y 5 HOH C 12 312 183 HOH HOH . Y 5 HOH C 13 313 185 HOH HOH . Y 5 HOH C 14 314 186 HOH HOH . Z 5 HOH D 1 301 12 HOH HOH . Z 5 HOH D 2 302 21 HOH HOH . Z 5 HOH D 3 303 47 HOH HOH . Z 5 HOH D 4 304 51 HOH HOH . Z 5 HOH D 5 305 65 HOH HOH . Z 5 HOH D 6 306 80 HOH HOH . Z 5 HOH D 7 307 82 HOH HOH . Z 5 HOH D 8 308 89 HOH HOH . Z 5 HOH D 9 309 135 HOH HOH . Z 5 HOH D 10 310 144 HOH HOH . Z 5 HOH D 11 311 156 HOH HOH . Z 5 HOH D 12 312 171 HOH HOH . Z 5 HOH D 13 313 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CD1 GSH . . . S 3 -1.979 7.413 5.592 1 129.14 ? CD1 GSH 204 C 1 HETATM 2 O OE1 GSH . . . S 3 -3.057 6.859 5.598 1 129.89 ? OE1 GSH 204 C 1 HETATM 3 N N2 GSH . . . S 3 -0.959 7.018 4.645 1 127.94 ? N2 GSH 204 C 1 HETATM 4 C CA2 GSH . . . S 3 0.423 6.894 5.065 1 126.06 ? CA2 GSH 204 C 1 HETATM 5 C C2 GSH . . . S 3 1.272 7.739 4.184 1 124.57 ? C2 GSH 204 C 1 HETATM 6 C CB2 GSH . . . S 3 0.883 5.476 4.981 1 125.05 ? CB2 GSH 204 C 1 HETATM 7 S SG2 GSH . . . S 3 -0.082 4.382 6.026 1 123.31 ? SG2 GSH 204 C 1 HETATM 8 N N3 GSH . . . S 3 0.971 9.163 4.023 1 123.74 ? N3 GSH 204 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #