data_4JPJ
#
_model_server_result.job_id            Wiru9nHGPzLaLxuXf1RYRQ 
_model_server_result.datetime_utc      '2024-10-19 02:24:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jpj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":202}' 
#
_entry.id    4JPJ 
#
_exptl.entry_id    4JPJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.97 
_cell.angle_gamma         90 
_cell.entry_id            4JPJ 
_cell.length_a            44.96 
_cell.length_b            217.73 
_cell.length_c            44.99 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JPJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 7 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 15 A CYS 15 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 51 A CYS 51 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 99 A CYS 99 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 B SG CYS 7 B CYS 7 1_555 B SG CYS 158 B CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 B SG CYS 15 B CYS 15 1_555 B SG CYS 151 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 B SG CYS 51 B CYS 51 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf8 B SG CYS 99 B CYS 99 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf9 C SG CYS 7 C CYS 7 1_555 C SG CYS 158 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 C SG CYS 15 C CYS 15 1_555 C SG CYS 151 C CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf11 C SG CYS 51 C CYS 51 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf12 C SG CYS 99 C CYS 99 1_555 C SG CYS 105 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf13 D SG CYS 7 D CYS 7 1_555 D SG CYS 158 D CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf14 D SG CYS 15 D CYS 15 1_555 D SG CYS 151 D CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf15 D SG CYS 51 D CYS 51 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf16 D SG CYS 99 D CYS 99 1_555 D SG CYS 105 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 18 A ASN 18 1_555 E C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 A ND2 ASN 65 A ASN 65 1_555 F C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale3 B ND2 ASN 18 B ASN 18 1_555 G C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale4 B ND2 ASN 65 B ASN 65 1_555 H C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 C ND2 ASN 18 C ASN 18 1_555 I C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 C ND2 ASN 65 C ASN 65 1_555 J C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale7 D ND2 ASN 18 D ASN 18 1_555 K C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 D ND2 ASN 65 D ASN 65 1_555 L C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4JPJ 
_atom_sites.fract_transf_matrix[1][1]    0.022242 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.012825 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004593 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025658 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 201 218 NAG NAG . 
F 2 NAG A 1 202 265 NAG NAG . 
G 2 NAG B 1 201 218 NAG NAG . 
H 2 NAG B 1 202 265 NAG NAG . 
I 2 NAG C 1 201 218 NAG NAG . 
J 2 NAG C 1 202 265 NAG NAG . 
K 2 NAG D 1 201 218 NAG NAG . 
L 2 NAG D 1 202 265 NAG NAG . 
M 3 HOH A 1 301 6 HOH HOH . 
M 3 HOH A 2 302 18 HOH HOH . 
M 3 HOH A 3 303 25 HOH HOH . 
M 3 HOH A 4 304 26 HOH HOH . 
M 3 HOH A 5 305 27 HOH HOH . 
M 3 HOH A 6 306 28 HOH HOH . 
M 3 HOH A 7 307 29 HOH HOH . 
M 3 HOH A 8 308 30 HOH HOH . 
M 3 HOH A 9 309 31 HOH HOH . 
N 3 HOH B 1 301 1 HOH HOH . 
N 3 HOH B 2 302 2 HOH HOH . 
N 3 HOH B 3 303 3 HOH HOH . 
N 3 HOH B 4 304 5 HOH HOH . 
N 3 HOH B 5 305 9 HOH HOH . 
N 3 HOH B 6 306 12 HOH HOH . 
N 3 HOH B 7 307 15 HOH HOH . 
N 3 HOH B 8 308 21 HOH HOH . 
N 3 HOH B 9 309 24 HOH HOH . 
N 3 HOH B 10 310 33 HOH HOH . 
N 3 HOH B 11 311 35 HOH HOH . 
N 3 HOH B 12 312 36 HOH HOH . 
N 3 HOH B 13 313 37 HOH HOH . 
N 3 HOH B 14 314 38 HOH HOH . 
N 3 HOH B 15 315 39 HOH HOH . 
N 3 HOH B 16 316 40 HOH HOH . 
N 3 HOH B 17 317 41 HOH HOH . 
N 3 HOH B 18 318 42 HOH HOH . 
N 3 HOH B 19 319 56 HOH HOH . 
N 3 HOH B 20 320 57 HOH HOH . 
N 3 HOH B 21 321 58 HOH HOH . 
N 3 HOH B 22 322 59 HOH HOH . 
N 3 HOH B 23 323 60 HOH HOH . 
O 3 HOH C 1 301 43 HOH HOH . 
O 3 HOH C 2 302 44 HOH HOH . 
O 3 HOH C 3 303 45 HOH HOH . 
O 3 HOH C 4 304 46 HOH HOH . 
O 3 HOH C 5 305 47 HOH HOH . 
O 3 HOH C 6 306 48 HOH HOH . 
O 3 HOH C 7 307 49 HOH HOH . 
O 3 HOH C 8 308 51 HOH HOH . 
O 3 HOH C 9 309 52 HOH HOH . 
P 3 HOH D 1 301 34 HOH HOH . 
P 3 HOH D 2 302 53 HOH HOH . 
P 3 HOH D 3 303 54 HOH HOH . 
P 3 HOH D 4 304 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 2 67.536 -42.619 33.84 1 22.54 ? C1 NAG 202 C 1 
HETATM 2 C C2 NAG . . . J 2 68.845 -43.126 33.226 1 21.69 ? C2 NAG 202 C 1 
HETATM 3 C C3 NAG . . . J 2 69.198 -42.421 31.919 1 21.7 ? C3 NAG 202 C 1 
HETATM 4 C C4 NAG . . . J 2 67.977 -42.446 31.005 1 21.64 ? C4 NAG 202 C 1 
HETATM 5 C C5 NAG . . . J 2 66.896 -41.639 31.712 1 21.92 ? C5 NAG 202 C 1 
HETATM 6 C C6 NAG . . . J 2 65.672 -41.341 30.839 1 21.81 ? C6 NAG 202 C 1 
HETATM 7 C C7 NAG . . . J 2 70.734 -44.061 34.478 1 21.05 ? C7 NAG 202 C 1 
HETATM 8 C C8 NAG . . . J 2 71.853 -43.816 35.448 1 20.89 ? C8 NAG 202 C 1 
HETATM 9 N N2 NAG . . . J 2 69.959 -43.022 34.162 1 21.22 ? N2 NAG 202 C 1 
HETATM 10 O O3 NAG . . . J 2 70.327 -43.039 31.337 1 22.01 ? O3 NAG 202 C 1 
HETATM 11 O O4 NAG . . . J 2 68.253 -41.908 29.735 1 21.41 ? O4 NAG 202 C 1 
HETATM 12 O O5 NAG . . . J 2 66.52 -42.349 32.872 1 22.14 ? O5 NAG 202 C 1 
HETATM 13 O O6 NAG . . . J 2 65.167 -42.515 30.242 1 21.98 ? O6 NAG 202 C 1 
HETATM 14 O O7 NAG . . . J 2 70.571 -45.191 34.022 1 21.2 ? O7 NAG 202 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#