data_4JPK
#
_model_server_result.job_id            kiMUvkAeFheToU6ZVqUmwA 
_model_server_result.datetime_utc      '2024-10-19 03:53:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    4JPK 
#
_exptl.entry_id    4JPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.43 
_cell.angle_gamma         90 
_cell.entry_id            4JPK 
_cell.length_a            179.26 
_cell.length_b            63.3 
_cell.length_c            61.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 148 H CYS 140 1_555 A SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf4 B SG CYS 130 L CYS 136 1_555 B SG CYS 190 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 C SG CYS 7 A CYS 7 1_555 C SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf6 C SG CYS 15 A CYS 15 1_555 C SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf7 C SG CYS 51 A CYS 51 1_555 C SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 C SG CYS 99 A CYS 99 1_555 C SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
covale ? covale1 C ND2 ASN 18 A ASN 18 1_555 D C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale2 C ND2 ASN 65 A ASN 65 1_555 E C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4JPK 
_atom_sites.fract_transf_matrix[1][1]    0.005578 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000042 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015798 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016314 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 201 218 NAG NAG . 
E 4 NAG A 1 202 265 NAG NAG . 
F 5 HOH H 1 301 3 HOH HOH . 
F 5 HOH H 2 302 4 HOH HOH . 
F 5 HOH H 3 303 6 HOH HOH . 
F 5 HOH H 4 304 14 HOH HOH . 
F 5 HOH H 5 305 16 HOH HOH . 
F 5 HOH H 6 306 17 HOH HOH . 
F 5 HOH H 7 307 20 HOH HOH . 
F 5 HOH H 8 308 21 HOH HOH . 
F 5 HOH H 9 309 25 HOH HOH . 
F 5 HOH H 10 310 26 HOH HOH . 
F 5 HOH H 11 311 35 HOH HOH . 
F 5 HOH H 12 312 37 HOH HOH . 
F 5 HOH H 13 313 38 HOH HOH . 
F 5 HOH H 14 314 39 HOH HOH . 
F 5 HOH H 15 315 41 HOH HOH . 
F 5 HOH H 16 316 42 HOH HOH . 
F 5 HOH H 17 317 44 HOH HOH . 
F 5 HOH H 18 318 47 HOH HOH . 
F 5 HOH H 19 319 52 HOH HOH . 
F 5 HOH H 20 320 53 HOH HOH . 
F 5 HOH H 21 321 54 HOH HOH . 
F 5 HOH H 22 322 56 HOH HOH . 
F 5 HOH H 23 323 58 HOH HOH . 
F 5 HOH H 24 324 63 HOH HOH . 
F 5 HOH H 25 325 65 HOH HOH . 
F 5 HOH H 26 326 67 HOH HOH . 
F 5 HOH H 27 327 69 HOH HOH . 
F 5 HOH H 28 328 70 HOH HOH . 
F 5 HOH H 29 329 71 HOH HOH . 
F 5 HOH H 30 330 72 HOH HOH . 
F 5 HOH H 31 331 73 HOH HOH . 
F 5 HOH H 32 332 74 HOH HOH . 
F 5 HOH H 33 333 78 HOH HOH . 
F 5 HOH H 34 334 79 HOH HOH . 
F 5 HOH H 35 335 80 HOH HOH . 
F 5 HOH H 36 336 81 HOH HOH . 
F 5 HOH H 37 337 82 HOH HOH . 
F 5 HOH H 38 338 87 HOH HOH . 
F 5 HOH H 39 339 88 HOH HOH . 
F 5 HOH H 40 340 90 HOH HOH . 
F 5 HOH H 41 341 100 HOH HOH . 
F 5 HOH H 42 342 101 HOH HOH . 
F 5 HOH H 43 343 102 HOH HOH . 
F 5 HOH H 44 344 105 HOH HOH . 
F 5 HOH H 45 345 107 HOH HOH . 
F 5 HOH H 46 346 108 HOH HOH . 
F 5 HOH H 47 347 109 HOH HOH . 
F 5 HOH H 48 348 111 HOH HOH . 
F 5 HOH H 49 349 116 HOH HOH . 
F 5 HOH H 50 350 118 HOH HOH . 
F 5 HOH H 51 351 121 HOH HOH . 
F 5 HOH H 52 352 129 HOH HOH . 
F 5 HOH H 53 353 130 HOH HOH . 
F 5 HOH H 54 354 131 HOH HOH . 
F 5 HOH H 55 355 133 HOH HOH . 
F 5 HOH H 56 356 134 HOH HOH . 
F 5 HOH H 57 357 136 HOH HOH . 
F 5 HOH H 58 358 140 HOH HOH . 
F 5 HOH H 59 359 141 HOH HOH . 
F 5 HOH H 60 360 143 HOH HOH . 
F 5 HOH H 61 361 145 HOH HOH . 
F 5 HOH H 62 362 154 HOH HOH . 
F 5 HOH H 63 363 156 HOH HOH . 
F 5 HOH H 64 364 157 HOH HOH . 
F 5 HOH H 65 365 163 HOH HOH . 
F 5 HOH H 66 366 171 HOH HOH . 
F 5 HOH H 67 367 172 HOH HOH . 
F 5 HOH H 68 368 173 HOH HOH . 
G 5 HOH L 1 301 5 HOH HOH . 
G 5 HOH L 2 302 9 HOH HOH . 
G 5 HOH L 3 303 10 HOH HOH . 
G 5 HOH L 4 304 11 HOH HOH . 
G 5 HOH L 5 305 13 HOH HOH . 
G 5 HOH L 6 306 23 HOH HOH . 
G 5 HOH L 7 307 27 HOH HOH . 
G 5 HOH L 8 308 30 HOH HOH . 
G 5 HOH L 9 309 31 HOH HOH . 
G 5 HOH L 10 310 32 HOH HOH . 
G 5 HOH L 11 311 33 HOH HOH . 
G 5 HOH L 12 312 43 HOH HOH . 
G 5 HOH L 13 313 45 HOH HOH . 
G 5 HOH L 14 314 55 HOH HOH . 
G 5 HOH L 15 315 59 HOH HOH . 
G 5 HOH L 16 316 60 HOH HOH . 
G 5 HOH L 17 317 64 HOH HOH . 
G 5 HOH L 18 318 66 HOH HOH . 
G 5 HOH L 19 319 68 HOH HOH . 
G 5 HOH L 20 320 77 HOH HOH . 
G 5 HOH L 21 321 84 HOH HOH . 
G 5 HOH L 22 322 86 HOH HOH . 
G 5 HOH L 23 323 89 HOH HOH . 
G 5 HOH L 24 324 91 HOH HOH . 
G 5 HOH L 25 325 92 HOH HOH . 
G 5 HOH L 26 326 93 HOH HOH . 
G 5 HOH L 27 327 94 HOH HOH . 
G 5 HOH L 28 328 98 HOH HOH . 
G 5 HOH L 29 329 99 HOH HOH . 
G 5 HOH L 30 330 104 HOH HOH . 
G 5 HOH L 31 331 106 HOH HOH . 
G 5 HOH L 32 332 115 HOH HOH . 
G 5 HOH L 33 333 125 HOH HOH . 
G 5 HOH L 34 334 126 HOH HOH . 
G 5 HOH L 35 335 127 HOH HOH . 
G 5 HOH L 36 336 128 HOH HOH . 
G 5 HOH L 37 337 137 HOH HOH . 
G 5 HOH L 38 338 138 HOH HOH . 
G 5 HOH L 39 339 142 HOH HOH . 
G 5 HOH L 40 340 146 HOH HOH . 
G 5 HOH L 41 341 148 HOH HOH . 
G 5 HOH L 42 342 150 HOH HOH . 
G 5 HOH L 43 343 151 HOH HOH . 
G 5 HOH L 44 344 152 HOH HOH . 
G 5 HOH L 45 345 155 HOH HOH . 
G 5 HOH L 46 346 161 HOH HOH . 
G 5 HOH L 47 347 162 HOH HOH . 
H 5 HOH A 1 301 1 HOH HOH . 
H 5 HOH A 2 302 2 HOH HOH . 
H 5 HOH A 3 303 7 HOH HOH . 
H 5 HOH A 4 304 8 HOH HOH . 
H 5 HOH A 5 305 12 HOH HOH . 
H 5 HOH A 6 306 15 HOH HOH . 
H 5 HOH A 7 307 18 HOH HOH . 
H 5 HOH A 8 308 19 HOH HOH . 
H 5 HOH A 9 309 22 HOH HOH . 
H 5 HOH A 10 310 24 HOH HOH . 
H 5 HOH A 11 311 28 HOH HOH . 
H 5 HOH A 12 312 29 HOH HOH . 
H 5 HOH A 13 313 34 HOH HOH . 
H 5 HOH A 14 314 36 HOH HOH . 
H 5 HOH A 15 315 40 HOH HOH . 
H 5 HOH A 16 316 46 HOH HOH . 
H 5 HOH A 17 317 48 HOH HOH . 
H 5 HOH A 18 318 49 HOH HOH . 
H 5 HOH A 19 319 50 HOH HOH . 
H 5 HOH A 20 320 51 HOH HOH . 
H 5 HOH A 21 321 57 HOH HOH . 
H 5 HOH A 22 322 61 HOH HOH . 
H 5 HOH A 23 323 62 HOH HOH . 
H 5 HOH A 24 324 75 HOH HOH . 
H 5 HOH A 25 325 76 HOH HOH . 
H 5 HOH A 26 326 83 HOH HOH . 
H 5 HOH A 27 327 85 HOH HOH . 
H 5 HOH A 28 328 95 HOH HOH . 
H 5 HOH A 29 329 96 HOH HOH . 
H 5 HOH A 30 330 97 HOH HOH . 
H 5 HOH A 31 331 103 HOH HOH . 
H 5 HOH A 32 332 110 HOH HOH . 
H 5 HOH A 33 333 112 HOH HOH . 
H 5 HOH A 34 334 113 HOH HOH . 
H 5 HOH A 35 335 114 HOH HOH . 
H 5 HOH A 36 336 117 HOH HOH . 
H 5 HOH A 37 337 119 HOH HOH . 
H 5 HOH A 38 338 120 HOH HOH . 
H 5 HOH A 39 339 122 HOH HOH . 
H 5 HOH A 40 340 123 HOH HOH . 
H 5 HOH A 41 341 124 HOH HOH . 
H 5 HOH A 42 342 132 HOH HOH . 
H 5 HOH A 43 343 135 HOH HOH . 
H 5 HOH A 44 344 139 HOH HOH . 
H 5 HOH A 45 345 144 HOH HOH . 
H 5 HOH A 46 346 147 HOH HOH . 
H 5 HOH A 47 347 149 HOH HOH . 
H 5 HOH A 48 348 153 HOH HOH . 
H 5 HOH A 49 349 158 HOH HOH . 
H 5 HOH A 50 350 159 HOH HOH . 
H 5 HOH A 51 351 160 HOH HOH . 
H 5 HOH A 52 352 164 HOH HOH . 
H 5 HOH A 53 353 165 HOH HOH . 
H 5 HOH A 54 354 166 HOH HOH . 
H 5 HOH A 55 355 167 HOH HOH . 
H 5 HOH A 56 356 168 HOH HOH . 
H 5 HOH A 57 357 169 HOH HOH . 
H 5 HOH A 58 358 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 4 19.874 -25.37 15.621 1 36.33 ? C1 NAG 202 A 1 
HETATM 2 C C2 NAG . . . E 4 20.788 -24.278 15.07 1 40.52 ? C2 NAG 202 A 1 
HETATM 3 C C3 NAG . . . E 4 21.914 -24.827 14.192 1 46 ? C3 NAG 202 A 1 
HETATM 4 C C4 NAG . . . E 4 22.56 -26.046 14.831 1 44.78 ? C4 NAG 202 A 1 
HETATM 5 C C5 NAG . . . E 4 21.456 -27.033 15.162 1 44.68 ? C5 NAG 202 A 1 
HETATM 6 C C6 NAG . . . E 4 22.02 -28.338 15.696 1 42.92 ? C6 NAG 202 A 1 
HETATM 7 C C7 NAG . . . E 4 20.186 -22.009 14.497 1 38.91 ? C7 NAG 202 A 1 
HETATM 8 C C8 NAG . . . E 4 19.443 -21.104 13.561 1 33.08 ? C8 NAG 202 A 1 
HETATM 9 N N2 NAG . . . E 4 19.998 -23.314 14.33 1 38.95 ? N2 NAG 202 A 1 
HETATM 10 O O3 NAG . . . E 4 22.895 -23.836 13.977 1 49.59 ? O3 NAG 202 A 1 
HETATM 11 O O4 NAG . . . E 4 23.498 -26.626 13.954 1 44.92 ? O4 NAG 202 A 1 
HETATM 12 O O5 NAG . . . E 4 20.641 -26.431 16.14 1 44.78 ? O5 NAG 202 A 1 
HETATM 13 O O6 NAG . . . E 4 22.956 -28.009 16.692 1 42.81 ? O6 NAG 202 A 1 
HETATM 14 O O7 NAG . . . E 4 20.936 -21.546 15.359 1 46.61 ? O7 NAG 202 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#