data_4JPV
#
_model_server_result.job_id            16V71A1ReaAjUWfOySsNEA 
_model_server_result.datetime_utc      '2025-01-09 03:36:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jpv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":301}' 
#
_entry.id    4JPV 
#
_exptl.entry_id    4JPV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JPV 
_cell.length_a            68.627 
_cell.length_b            69.887 
_cell.length_c            231.633 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JPV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 G CYS 54 1_555 A SG CYS 31 G CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 76 G CYS 119 1_555 A SG CYS 89 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 A SG CYS 102 G CYS 218 1_555 A SG CYS 131 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 A SG CYS 112 G CYS 228 1_555 A SG CYS 123 G CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 A SG CYS 245 G CYS 378 1_555 A SG CYS 306 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 A SG CYS 252 G CYS 385 1_555 A SG CYS 279 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 A SG CYS 262 G CYS 395 1_555 A SG CYS 271 G CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 B SG CYS 22 H CYS 22 1_555 B SG CYS 100 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 B SG CYS 150 H CYS 140 1_555 B SG CYS 206 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 C SG CYS 23 L CYS 23 1_555 C SG CYS 84 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 C SG CYS 126 L CYS 134 1_555 C SG CYS 186 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 118 G ASN 234 1_555 D C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale2 A ND2 ASN 125 G ASN 241 1_555 E C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 146 G ASN 262 1_555 F C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 A ND2 ASN 160 G ASN 276 1_555 G C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 A ND2 ASN 173 G ASN 289 1_555 H C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale6 A ND2 ASN 179 G ASN 295 1_555 I C1 NAG . G NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale7 A ND2 ASN 202 G ASN 334 1_555 J C1 NAG . G NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale8 A ND2 ASN 253 G ASN 386 1_555 K C1 NAG . G NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale9 A ND2 ASN 259 G ASN 392 1_555 L C1 NAG . G NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale10 A ND2 ASN 309 G ASN 448 1_555 M C1 NAG . G NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale11 C ND2 ASN 68 L ASN 72 1_555 R C1 NAG . L NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 279 n n 
C1 O1 NAG sing 280 n n 
C1 O5 NAG sing 281 n n 
C1 H1 NAG sing 282 n n 
C2 C3 NAG sing 283 n n 
C2 N2 NAG sing 284 n n 
C2 H2 NAG sing 285 n n 
C3 C4 NAG sing 286 n n 
C3 O3 NAG sing 287 n n 
C3 H3 NAG sing 288 n n 
C4 C5 NAG sing 289 n n 
C4 O4 NAG sing 290 n n 
C4 H4 NAG sing 291 n n 
C5 C6 NAG sing 292 n n 
C5 O5 NAG sing 293 n n 
C5 H5 NAG sing 294 n n 
C6 O6 NAG sing 295 n n 
C6 H61 NAG sing 296 n n 
C6 H62 NAG sing 297 n n 
C7 C8 NAG sing 298 n n 
C7 N2 NAG sing 299 n n 
C7 O7 NAG doub 300 n n 
C8 H81 NAG sing 301 n n 
C8 H82 NAG sing 302 n n 
C8 H83 NAG sing 303 n n 
N2 HN2 NAG sing 304 n n 
O1 HO1 NAG sing 305 n n 
O3 HO3 NAG sing 306 n n 
O4 HO4 NAG sing 307 n n 
O6 HO6 NAG sing 308 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4JPV 
_atom_sites.fract_transf_matrix[1][1]    0.014572 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014309 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004317 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG G 1 501 734 NAG NAG . 
E 4 NAG G 1 502 741 NAG NAG . 
F 4 NAG G 1 503 762 NAG NAG . 
G 4 NAG G 1 504 776 NAG NAG . 
H 4 NAG G 1 505 789 NAG NAG . 
I 4 NAG G 1 506 795 NAG NAG . 
J 4 NAG G 1 507 834 NAG NAG . 
K 4 NAG G 1 508 886 NAG NAG . 
L 4 NAG G 1 509 892 NAG NAG . 
M 4 NAG G 1 510 948 NAG NAG . 
N 5 EPE G 1 511 800 EPE EPE . 
O 6 EDO G 1 512 901 EDO EDO . 
P 6 EDO G 1 513 902 EDO EDO . 
Q 6 EDO G 1 514 903 EDO EDO . 
R 4 NAG L 1 301 572 NAG NAG . 
S 6 EDO L 1 302 900 EDO EDO . 
T 7 HOH G 1 601 1 HOH HOH . 
T 7 HOH G 2 602 2 HOH HOH . 
T 7 HOH G 3 603 3 HOH HOH . 
T 7 HOH G 4 604 4 HOH HOH . 
T 7 HOH G 5 605 5 HOH HOH . 
T 7 HOH G 6 606 6 HOH HOH . 
T 7 HOH G 7 607 7 HOH HOH . 
T 7 HOH G 8 608 8 HOH HOH . 
T 7 HOH G 9 609 9 HOH HOH . 
T 7 HOH G 10 610 11 HOH HOH . 
T 7 HOH G 11 611 12 HOH HOH . 
T 7 HOH G 12 612 14 HOH HOH . 
T 7 HOH G 13 613 15 HOH HOH . 
T 7 HOH G 14 614 1 HOH HOH . 
T 7 HOH G 15 615 2 HOH HOH . 
T 7 HOH G 16 616 3 HOH HOH . 
T 7 HOH G 17 617 4 HOH HOH . 
T 7 HOH G 18 618 5 HOH HOH . 
T 7 HOH G 19 619 7 HOH HOH . 
T 7 HOH G 20 620 8 HOH HOH . 
T 7 HOH G 21 621 10 HOH HOH . 
T 7 HOH G 22 622 12 HOH HOH . 
T 7 HOH G 23 623 14 HOH HOH . 
T 7 HOH G 24 624 15 HOH HOH . 
T 7 HOH G 25 625 16 HOH HOH . 
T 7 HOH G 26 626 19 HOH HOH . 
T 7 HOH G 27 627 20 HOH HOH . 
T 7 HOH G 28 628 21 HOH HOH . 
T 7 HOH G 29 629 22 HOH HOH . 
T 7 HOH G 30 630 24 HOH HOH . 
T 7 HOH G 31 631 29 HOH HOH . 
T 7 HOH G 32 632 30 HOH HOH . 
T 7 HOH G 33 633 31 HOH HOH . 
T 7 HOH G 34 634 32 HOH HOH . 
T 7 HOH G 35 635 34 HOH HOH . 
T 7 HOH G 36 636 35 HOH HOH . 
T 7 HOH G 37 637 36 HOH HOH . 
T 7 HOH G 38 638 37 HOH HOH . 
T 7 HOH G 39 639 40 HOH HOH . 
T 7 HOH G 40 640 45 HOH HOH . 
T 7 HOH G 41 641 48 HOH HOH . 
T 7 HOH G 42 642 49 HOH HOH . 
T 7 HOH G 43 643 52 HOH HOH . 
T 7 HOH G 44 644 54 HOH HOH . 
T 7 HOH G 45 645 55 HOH HOH . 
T 7 HOH G 46 646 56 HOH HOH . 
T 7 HOH G 47 647 58 HOH HOH . 
T 7 HOH G 48 648 60 HOH HOH . 
T 7 HOH G 49 649 61 HOH HOH . 
T 7 HOH G 50 650 63 HOH HOH . 
T 7 HOH G 51 651 64 HOH HOH . 
T 7 HOH G 52 652 66 HOH HOH . 
T 7 HOH G 53 653 67 HOH HOH . 
T 7 HOH G 54 654 68 HOH HOH . 
T 7 HOH G 55 655 69 HOH HOH . 
T 7 HOH G 56 656 70 HOH HOH . 
T 7 HOH G 57 657 71 HOH HOH . 
U 7 HOH H 1 301 10 HOH HOH . 
U 7 HOH H 2 302 9 HOH HOH . 
U 7 HOH H 3 303 11 HOH HOH . 
U 7 HOH H 4 304 17 HOH HOH . 
U 7 HOH H 5 305 27 HOH HOH . 
U 7 HOH H 6 306 28 HOH HOH . 
U 7 HOH H 7 307 33 HOH HOH . 
U 7 HOH H 8 308 43 HOH HOH . 
U 7 HOH H 9 309 46 HOH HOH . 
U 7 HOH H 10 310 59 HOH HOH . 
U 7 HOH H 11 311 72 HOH HOH . 
V 7 HOH L 1 401 13 HOH HOH . 
V 7 HOH L 2 402 17 HOH HOH . 
V 7 HOH L 3 403 18 HOH HOH . 
V 7 HOH L 4 404 6 HOH HOH . 
V 7 HOH L 5 405 13 HOH HOH . 
V 7 HOH L 6 406 38 HOH HOH . 
V 7 HOH L 7 407 39 HOH HOH . 
V 7 HOH L 8 408 42 HOH HOH . 
V 7 HOH L 9 409 47 HOH HOH . 
V 7 HOH L 10 410 51 HOH HOH . 
V 7 HOH L 11 411 53 HOH HOH . 
V 7 HOH L 12 412 57 HOH HOH . 
V 7 HOH L 13 413 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . R 4 -8.429 -0.216 -52.868 1 104.68 ? C1 NAG 301 L 1 
HETATM 2 C C2 NAG . . . R 4 -8.227 -1.11 -54.1 1 122.43 ? C2 NAG 301 L 1 
HETATM 3 C C3 NAG . . . R 4 -9.132 -2.34 -54.17 1 121.49 ? C3 NAG 301 L 1 
HETATM 4 C C4 NAG . . . R 4 -9.364 -2.954 -52.798 1 127.35 ? C4 NAG 301 L 1 
HETATM 5 C C5 NAG . . . R 4 -9.839 -1.857 -51.857 1 121.06 ? C5 NAG 301 L 1 
HETATM 6 C C6 NAG . . . R 4 -10.257 -2.398 -50.495 1 121.53 ? C6 NAG 301 L 1 
HETATM 7 C C7 NAG . . . R 4 -7.636 -0.395 -56.354 1 139.37 ? C7 NAG 301 L 1 
HETATM 8 C C8 NAG . . . R 4 -7.754 0.711 -57.362 1 137.52 ? C8 NAG 301 L 1 
HETATM 9 N N2 NAG . . . R 4 -8.439 -0.315 -55.296 1 135.4 ? N2 NAG 301 L 1 
HETATM 10 O O3 NAG . . . R 4 -8.555 -3.3 -55.03 1 110.24 ? O3 NAG 301 L 1 
HETATM 11 O O4 NAG . . . R 4 -10.332 -3.978 -52.884 1 133.46 ? O4 NAG 301 L 1 
HETATM 12 O O5 NAG . . . R 4 -8.807 -0.91 -51.693 1 115.27 ? O5 NAG 301 L 1 
HETATM 13 O O6 NAG . . . R 4 -9.35 -3.388 -50.073 1 125.63 ? O6 NAG 301 L 1 
HETATM 14 O O7 NAG . . . R 4 -6.837 -1.316 -56.524 1 138.69 ? O7 NAG 301 L 1 
#
_model_server_stats.io_time_ms              84 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           14 
#