data_4JPY # _model_server_result.job_id AtC2IKLh373zzfcJEzfHVg _model_server_result.datetime_utc '2024-11-22 04:08:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jpy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4JPY # _exptl.entry_id 4JPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENYLALANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 107.7 _cell.angle_beta 103.88 _cell.angle_gamma 84.58 _cell.entry_id 4JPY _cell.length_a 38.294 _cell.length_b 36.846 _cell.length_c 48.388 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 138 A HIS 138 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc2 A NE2 HIS 143 A HIS 143 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc3 A OE2 GLU 184 A GLU 184 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 A OE1 GLU 184 A GLU 184 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 B FE FE . A FE 301 1_555 D O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id PHE _chem_comp.mon_nstd_flag y _chem_comp.name PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PHE sing 237 n n N H PHE sing 238 n n N H2 PHE sing 239 n n CA C PHE sing 240 n n CA CB PHE sing 241 n n CA HA PHE sing 242 n n C O PHE doub 243 n n C OXT PHE sing 244 n n CB CG PHE sing 245 n n CB HB2 PHE sing 246 n n CB HB3 PHE sing 247 n n CG CD1 PHE doub 248 n y CG CD2 PHE sing 249 n y CD1 CE1 PHE sing 250 n y CD1 HD1 PHE sing 251 n n CD2 CE2 PHE doub 252 n y CD2 HD2 PHE sing 253 n n CE1 CZ PHE doub 254 n y CE1 HE1 PHE sing 255 n n CE2 CZ PHE sing 256 n y CE2 HE2 PHE sing 257 n n CZ HZ PHE sing 258 n n OXT HXT PHE sing 259 n n # _atom_sites.entry_id 4JPY _atom_sites.fract_transf_matrix[1][1] 0.026114 _atom_sites.fract_transf_matrix[1][2] -0.002479 _atom_sites.fract_transf_matrix[1][3] 0.005992 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027262 _atom_sites.fract_transf_matrix[2][3] 0.008298 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 301 1 FE FE . C 3 PHE A 1 302 1 PHE PHE . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 13 HOH HOH . D 4 HOH A 13 413 14 HOH HOH . D 4 HOH A 14 414 15 HOH HOH . D 4 HOH A 15 415 16 HOH HOH . D 4 HOH A 16 416 17 HOH HOH . D 4 HOH A 17 417 18 HOH HOH . D 4 HOH A 18 418 19 HOH HOH . D 4 HOH A 19 419 20 HOH HOH . D 4 HOH A 20 420 21 HOH HOH . D 4 HOH A 21 421 22 HOH HOH . D 4 HOH A 22 422 23 HOH HOH . D 4 HOH A 23 423 24 HOH HOH . D 4 HOH A 24 424 25 HOH HOH . D 4 HOH A 25 425 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PHE . . . C 3 -7.563 5.471 17.009 1 27.03 ? N PHE 302 A 1 HETATM 2 C CA PHE . . . C 3 -7.142 6.56 16.078 1 28.14 ? CA PHE 302 A 1 HETATM 3 C C PHE . . . C 3 -7.488 7.923 16.659 1 30.39 ? C PHE 302 A 1 HETATM 4 O O PHE . . . C 3 -7.431 8.945 15.988 1 28.07 ? O PHE 302 A 1 HETATM 5 C CB PHE . . . C 3 -7.758 6.361 14.682 1 26.9 ? CB PHE 302 A 1 HETATM 6 C CG PHE . . . C 3 -6.956 5.425 13.794 1 26.16 ? CG PHE 302 A 1 HETATM 7 C CD1 PHE . . . C 3 -5.836 5.898 13.078 1 25.7 ? CD1 PHE 302 A 1 HETATM 8 C CD2 PHE . . . C 3 -7.288 4.087 13.687 1 25.04 ? CD2 PHE 302 A 1 HETATM 9 C CE1 PHE . . . C 3 -5.091 5.042 12.269 1 24.93 ? CE1 PHE 302 A 1 HETATM 10 C CE2 PHE . . . C 3 -6.542 3.227 12.867 1 25.5 ? CE2 PHE 302 A 1 HETATM 11 C CZ PHE . . . C 3 -5.447 3.704 12.156 1 24.07 ? CZ PHE 302 A 1 HETATM 12 O OXT PHE . . . C 3 -7.818 8.019 17.845 1 33.26 ? OXT PHE 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #