data_4JQ3 # _model_server_result.job_id W7qeXEokN3nkGaiNqx689g _model_server_result.datetime_utc '2024-11-23 23:54:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":405}' # _entry.id 4JQ3 # _exptl.entry_id 4JQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JQ3 _cell.length_a 143.65 _cell.length_b 143.65 _cell.length_c 203.882 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,O 1 1 B,G,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4JQ3 _atom_sites.fract_transf_matrix[1][1] 0.006961 _atom_sites.fract_transf_matrix[1][2] 0.004019 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZOM A 1 401 401 ZOM ZOM . D 3 NAP A 1 402 501 NAP NAP . E 4 EDO A 1 403 1 EDO EDO . F 5 TLA A 1 404 8 TLA TLA . G 2 ZOM B 1 401 401 ZOM ZOM . H 3 NAP B 1 402 501 NAP NAP . I 4 EDO B 1 403 2 EDO EDO . J 4 EDO B 1 404 3 EDO EDO . K 4 EDO B 1 405 4 EDO EDO . L 4 EDO B 1 406 5 EDO EDO . M 6 PO4 B 1 407 6 PO4 PO4 . N 5 TLA B 1 408 7 TLA TLA . O 7 HOH A 1 501 1 HOH HOH . O 7 HOH A 2 502 9 HOH HOH . O 7 HOH A 3 503 13 HOH HOH . O 7 HOH A 4 504 22 HOH HOH . O 7 HOH A 5 505 23 HOH HOH . O 7 HOH A 6 506 28 HOH HOH . O 7 HOH A 7 507 29 HOH HOH . O 7 HOH A 8 508 30 HOH HOH . O 7 HOH A 9 509 32 HOH HOH . O 7 HOH A 10 510 33 HOH HOH . O 7 HOH A 11 511 35 HOH HOH . O 7 HOH A 12 512 39 HOH HOH . O 7 HOH A 13 513 40 HOH HOH . O 7 HOH A 14 514 41 HOH HOH . O 7 HOH A 15 515 42 HOH HOH . O 7 HOH A 16 516 44 HOH HOH . O 7 HOH A 17 517 47 HOH HOH . O 7 HOH A 18 518 48 HOH HOH . O 7 HOH A 19 519 50 HOH HOH . O 7 HOH A 20 520 52 HOH HOH . O 7 HOH A 21 521 53 HOH HOH . O 7 HOH A 22 522 54 HOH HOH . O 7 HOH A 23 523 55 HOH HOH . O 7 HOH A 24 524 56 HOH HOH . O 7 HOH A 25 525 57 HOH HOH . O 7 HOH A 26 526 59 HOH HOH . O 7 HOH A 27 527 65 HOH HOH . O 7 HOH A 28 528 68 HOH HOH . O 7 HOH A 29 529 69 HOH HOH . O 7 HOH A 30 530 70 HOH HOH . O 7 HOH A 31 531 72 HOH HOH . O 7 HOH A 32 532 73 HOH HOH . O 7 HOH A 33 533 75 HOH HOH . O 7 HOH A 34 534 76 HOH HOH . O 7 HOH A 35 535 78 HOH HOH . O 7 HOH A 36 536 79 HOH HOH . O 7 HOH A 37 537 82 HOH HOH . O 7 HOH A 38 538 83 HOH HOH . O 7 HOH A 39 539 85 HOH HOH . O 7 HOH A 40 540 89 HOH HOH . O 7 HOH A 41 541 93 HOH HOH . O 7 HOH A 42 542 94 HOH HOH . O 7 HOH A 43 543 95 HOH HOH . O 7 HOH A 44 544 97 HOH HOH . O 7 HOH A 45 545 98 HOH HOH . O 7 HOH A 46 546 100 HOH HOH . O 7 HOH A 47 547 101 HOH HOH . O 7 HOH A 48 548 106 HOH HOH . O 7 HOH A 49 549 109 HOH HOH . O 7 HOH A 50 550 111 HOH HOH . O 7 HOH A 51 551 112 HOH HOH . O 7 HOH A 52 552 116 HOH HOH . O 7 HOH A 53 553 118 HOH HOH . O 7 HOH A 54 554 120 HOH HOH . O 7 HOH A 55 555 121 HOH HOH . O 7 HOH A 56 556 123 HOH HOH . O 7 HOH A 57 557 125 HOH HOH . O 7 HOH A 58 558 129 HOH HOH . O 7 HOH A 59 559 133 HOH HOH . O 7 HOH A 60 560 135 HOH HOH . O 7 HOH A 61 561 137 HOH HOH . O 7 HOH A 62 562 139 HOH HOH . O 7 HOH A 63 563 141 HOH HOH . O 7 HOH A 64 564 142 HOH HOH . O 7 HOH A 65 565 144 HOH HOH . O 7 HOH A 66 566 146 HOH HOH . O 7 HOH A 67 567 147 HOH HOH . O 7 HOH A 68 568 149 HOH HOH . O 7 HOH A 69 569 150 HOH HOH . O 7 HOH A 70 570 153 HOH HOH . O 7 HOH A 71 571 154 HOH HOH . O 7 HOH A 72 572 156 HOH HOH . O 7 HOH A 73 573 157 HOH HOH . O 7 HOH A 74 574 158 HOH HOH . O 7 HOH A 75 575 159 HOH HOH . O 7 HOH A 76 576 160 HOH HOH . O 7 HOH A 77 577 162 HOH HOH . O 7 HOH A 78 578 168 HOH HOH . O 7 HOH A 79 579 169 HOH HOH . O 7 HOH A 80 580 170 HOH HOH . O 7 HOH A 81 581 172 HOH HOH . O 7 HOH A 82 582 175 HOH HOH . O 7 HOH A 83 583 178 HOH HOH . O 7 HOH A 84 584 179 HOH HOH . O 7 HOH A 85 585 181 HOH HOH . O 7 HOH A 86 586 182 HOH HOH . O 7 HOH A 87 587 183 HOH HOH . O 7 HOH A 88 588 184 HOH HOH . O 7 HOH A 89 589 185 HOH HOH . O 7 HOH A 90 590 187 HOH HOH . O 7 HOH A 91 591 188 HOH HOH . O 7 HOH A 92 592 190 HOH HOH . O 7 HOH A 93 593 192 HOH HOH . O 7 HOH A 94 594 193 HOH HOH . O 7 HOH A 95 595 195 HOH HOH . O 7 HOH A 96 596 196 HOH HOH . O 7 HOH A 97 597 197 HOH HOH . O 7 HOH A 98 598 198 HOH HOH . O 7 HOH A 99 599 199 HOH HOH . O 7 HOH A 100 600 200 HOH HOH . O 7 HOH A 101 601 202 HOH HOH . O 7 HOH A 102 602 205 HOH HOH . O 7 HOH A 103 603 206 HOH HOH . O 7 HOH A 104 604 207 HOH HOH . O 7 HOH A 105 605 209 HOH HOH . O 7 HOH A 106 606 211 HOH HOH . O 7 HOH A 107 607 212 HOH HOH . O 7 HOH A 108 608 213 HOH HOH . O 7 HOH A 109 609 215 HOH HOH . O 7 HOH A 110 610 216 HOH HOH . O 7 HOH A 111 611 217 HOH HOH . O 7 HOH A 112 612 219 HOH HOH . O 7 HOH A 113 613 225 HOH HOH . O 7 HOH A 114 614 229 HOH HOH . O 7 HOH A 115 615 231 HOH HOH . O 7 HOH A 116 616 234 HOH HOH . O 7 HOH A 117 617 237 HOH HOH . O 7 HOH A 118 618 239 HOH HOH . O 7 HOH A 119 619 241 HOH HOH . O 7 HOH A 120 620 245 HOH HOH . O 7 HOH A 121 621 247 HOH HOH . O 7 HOH A 122 622 258 HOH HOH . O 7 HOH A 123 623 259 HOH HOH . O 7 HOH A 124 624 260 HOH HOH . O 7 HOH A 125 625 264 HOH HOH . O 7 HOH A 126 626 265 HOH HOH . O 7 HOH A 127 627 266 HOH HOH . O 7 HOH A 128 628 270 HOH HOH . O 7 HOH A 129 629 271 HOH HOH . O 7 HOH A 130 630 273 HOH HOH . O 7 HOH A 131 631 279 HOH HOH . O 7 HOH A 132 632 281 HOH HOH . O 7 HOH A 133 633 285 HOH HOH . O 7 HOH A 134 634 286 HOH HOH . O 7 HOH A 135 635 287 HOH HOH . O 7 HOH A 136 636 288 HOH HOH . O 7 HOH A 137 637 294 HOH HOH . O 7 HOH A 138 638 295 HOH HOH . O 7 HOH A 139 639 296 HOH HOH . O 7 HOH A 140 640 298 HOH HOH . O 7 HOH A 141 641 299 HOH HOH . O 7 HOH A 142 642 301 HOH HOH . O 7 HOH A 143 643 303 HOH HOH . O 7 HOH A 144 644 305 HOH HOH . O 7 HOH A 145 645 308 HOH HOH . P 7 HOH B 1 501 2 HOH HOH . P 7 HOH B 2 502 3 HOH HOH . P 7 HOH B 3 503 4 HOH HOH . P 7 HOH B 4 504 5 HOH HOH . P 7 HOH B 5 505 6 HOH HOH . P 7 HOH B 6 506 7 HOH HOH . P 7 HOH B 7 507 8 HOH HOH . P 7 HOH B 8 508 10 HOH HOH . P 7 HOH B 9 509 12 HOH HOH . P 7 HOH B 10 510 14 HOH HOH . P 7 HOH B 11 511 15 HOH HOH . P 7 HOH B 12 512 16 HOH HOH . P 7 HOH B 13 513 17 HOH HOH . P 7 HOH B 14 514 18 HOH HOH . P 7 HOH B 15 515 19 HOH HOH . P 7 HOH B 16 516 20 HOH HOH . P 7 HOH B 17 517 21 HOH HOH . P 7 HOH B 18 518 24 HOH HOH . P 7 HOH B 19 519 25 HOH HOH . P 7 HOH B 20 520 26 HOH HOH . P 7 HOH B 21 521 27 HOH HOH . P 7 HOH B 22 522 31 HOH HOH . P 7 HOH B 23 523 36 HOH HOH . P 7 HOH B 24 524 37 HOH HOH . P 7 HOH B 25 525 38 HOH HOH . P 7 HOH B 26 526 43 HOH HOH . P 7 HOH B 27 527 45 HOH HOH . P 7 HOH B 28 528 46 HOH HOH . P 7 HOH B 29 529 49 HOH HOH . P 7 HOH B 30 530 51 HOH HOH . P 7 HOH B 31 531 58 HOH HOH . P 7 HOH B 32 532 60 HOH HOH . P 7 HOH B 33 533 61 HOH HOH . P 7 HOH B 34 534 62 HOH HOH . P 7 HOH B 35 535 63 HOH HOH . P 7 HOH B 36 536 64 HOH HOH . P 7 HOH B 37 537 66 HOH HOH . P 7 HOH B 38 538 67 HOH HOH . P 7 HOH B 39 539 71 HOH HOH . P 7 HOH B 40 540 74 HOH HOH . P 7 HOH B 41 541 77 HOH HOH . P 7 HOH B 42 542 80 HOH HOH . P 7 HOH B 43 543 81 HOH HOH . P 7 HOH B 44 544 84 HOH HOH . P 7 HOH B 45 545 86 HOH HOH . P 7 HOH B 46 546 87 HOH HOH . P 7 HOH B 47 547 88 HOH HOH . P 7 HOH B 48 548 90 HOH HOH . P 7 HOH B 49 549 91 HOH HOH . P 7 HOH B 50 550 92 HOH HOH . P 7 HOH B 51 551 96 HOH HOH . P 7 HOH B 52 552 99 HOH HOH . P 7 HOH B 53 553 102 HOH HOH . P 7 HOH B 54 554 103 HOH HOH . P 7 HOH B 55 555 104 HOH HOH . P 7 HOH B 56 556 105 HOH HOH . P 7 HOH B 57 557 107 HOH HOH . P 7 HOH B 58 558 108 HOH HOH . P 7 HOH B 59 559 113 HOH HOH . P 7 HOH B 60 560 114 HOH HOH . P 7 HOH B 61 561 115 HOH HOH . P 7 HOH B 62 562 117 HOH HOH . P 7 HOH B 63 563 119 HOH HOH . P 7 HOH B 64 564 122 HOH HOH . P 7 HOH B 65 565 124 HOH HOH . P 7 HOH B 66 566 126 HOH HOH . P 7 HOH B 67 567 127 HOH HOH . P 7 HOH B 68 568 128 HOH HOH . P 7 HOH B 69 569 130 HOH HOH . P 7 HOH B 70 570 131 HOH HOH . P 7 HOH B 71 571 132 HOH HOH . P 7 HOH B 72 572 134 HOH HOH . P 7 HOH B 73 573 136 HOH HOH . P 7 HOH B 74 574 138 HOH HOH . P 7 HOH B 75 575 140 HOH HOH . P 7 HOH B 76 576 143 HOH HOH . P 7 HOH B 77 577 145 HOH HOH . P 7 HOH B 78 578 148 HOH HOH . P 7 HOH B 79 579 152 HOH HOH . P 7 HOH B 80 580 155 HOH HOH . P 7 HOH B 81 581 161 HOH HOH . P 7 HOH B 82 582 163 HOH HOH . P 7 HOH B 83 583 164 HOH HOH . P 7 HOH B 84 584 165 HOH HOH . P 7 HOH B 85 585 167 HOH HOH . P 7 HOH B 86 586 171 HOH HOH . P 7 HOH B 87 587 173 HOH HOH . P 7 HOH B 88 588 176 HOH HOH . P 7 HOH B 89 589 177 HOH HOH . P 7 HOH B 90 590 180 HOH HOH . P 7 HOH B 91 591 186 HOH HOH . P 7 HOH B 92 592 189 HOH HOH . P 7 HOH B 93 593 191 HOH HOH . P 7 HOH B 94 594 194 HOH HOH . P 7 HOH B 95 595 201 HOH HOH . P 7 HOH B 96 596 203 HOH HOH . P 7 HOH B 97 597 204 HOH HOH . P 7 HOH B 98 598 208 HOH HOH . P 7 HOH B 99 599 210 HOH HOH . P 7 HOH B 100 600 218 HOH HOH . P 7 HOH B 101 601 220 HOH HOH . P 7 HOH B 102 602 221 HOH HOH . P 7 HOH B 103 603 222 HOH HOH . P 7 HOH B 104 604 223 HOH HOH . P 7 HOH B 105 605 224 HOH HOH . P 7 HOH B 106 606 226 HOH HOH . P 7 HOH B 107 607 227 HOH HOH . P 7 HOH B 108 608 228 HOH HOH . P 7 HOH B 109 609 230 HOH HOH . P 7 HOH B 110 610 232 HOH HOH . P 7 HOH B 111 611 233 HOH HOH . P 7 HOH B 112 612 235 HOH HOH . P 7 HOH B 113 613 236 HOH HOH . P 7 HOH B 114 614 238 HOH HOH . P 7 HOH B 115 615 240 HOH HOH . P 7 HOH B 116 616 242 HOH HOH . P 7 HOH B 117 617 243 HOH HOH . P 7 HOH B 118 618 244 HOH HOH . P 7 HOH B 119 619 246 HOH HOH . P 7 HOH B 120 620 248 HOH HOH . P 7 HOH B 121 621 249 HOH HOH . P 7 HOH B 122 622 250 HOH HOH . P 7 HOH B 123 623 251 HOH HOH . P 7 HOH B 124 624 252 HOH HOH . P 7 HOH B 125 625 253 HOH HOH . P 7 HOH B 126 626 254 HOH HOH . P 7 HOH B 127 627 255 HOH HOH . P 7 HOH B 128 628 257 HOH HOH . P 7 HOH B 129 629 261 HOH HOH . P 7 HOH B 130 630 263 HOH HOH . P 7 HOH B 131 631 267 HOH HOH . P 7 HOH B 132 632 268 HOH HOH . P 7 HOH B 133 633 269 HOH HOH . P 7 HOH B 134 634 272 HOH HOH . P 7 HOH B 135 635 274 HOH HOH . P 7 HOH B 136 636 275 HOH HOH . P 7 HOH B 137 637 276 HOH HOH . P 7 HOH B 138 638 277 HOH HOH . P 7 HOH B 139 639 278 HOH HOH . P 7 HOH B 140 640 280 HOH HOH . P 7 HOH B 141 641 282 HOH HOH . P 7 HOH B 142 642 283 HOH HOH . P 7 HOH B 143 643 284 HOH HOH . P 7 HOH B 144 644 289 HOH HOH . P 7 HOH B 145 645 290 HOH HOH . P 7 HOH B 146 646 291 HOH HOH . P 7 HOH B 147 647 292 HOH HOH . P 7 HOH B 148 648 293 HOH HOH . P 7 HOH B 149 649 297 HOH HOH . P 7 HOH B 150 650 300 HOH HOH . P 7 HOH B 151 651 302 HOH HOH . P 7 HOH B 152 652 304 HOH HOH . P 7 HOH B 153 653 306 HOH HOH . P 7 HOH B 154 654 307 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 4 72.226 110.814 274.196 1 51.9 ? C1 EDO 405 B 1 HETATM 2 O O1 EDO . . . K 4 73.256 111.749 274.612 1 51.23 ? O1 EDO 405 B 1 HETATM 3 C C2 EDO . . . K 4 71.144 111.549 273.391 1 53.35 ? C2 EDO 405 B 1 HETATM 4 O O2 EDO . . . K 4 71.706 112.443 272.393 1 48.53 ? O2 EDO 405 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 456 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #