data_4JQC # _model_server_result.job_id upTQhKObssiWnzETYUNFWA _model_server_result.datetime_utc '2024-12-03 20:05:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4JQC # _exptl.entry_id 4JQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4JQC _cell.length_a 79.77 _cell.length_b 79.77 _cell.length_c 324.528 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 291 n n PA O2A NAD sing 292 n n PA O5B NAD sing 293 n n PA O3 NAD sing 294 n n O2A HOA2 NAD sing 295 n n O5B C5B NAD sing 296 n n C5B C4B NAD sing 297 n n C5B H51A NAD sing 298 n n C5B H52A NAD sing 299 n n C4B O4B NAD sing 300 n n C4B C3B NAD sing 301 n n C4B H4B NAD sing 302 n n O4B C1B NAD sing 303 n n C3B O3B NAD sing 304 n n C3B C2B NAD sing 305 n n C3B H3B NAD sing 306 n n O3B HO3A NAD sing 307 n n C2B O2B NAD sing 308 n n C2B C1B NAD sing 309 n n C2B H2B NAD sing 310 n n O2B HO2A NAD sing 311 n n C1B N9A NAD sing 312 n n C1B H1B NAD sing 313 n n N9A C8A NAD sing 314 n y N9A C4A NAD sing 315 n y C8A N7A NAD doub 316 n y C8A H8A NAD sing 317 n n N7A C5A NAD sing 318 n y C5A C6A NAD sing 319 n y C5A C4A NAD doub 320 n y C6A N6A NAD sing 321 n n C6A N1A NAD doub 322 n y N6A H61A NAD sing 323 n n N6A H62A NAD sing 324 n n N1A C2A NAD sing 325 n y C2A N3A NAD doub 326 n y C2A H2A NAD sing 327 n n N3A C4A NAD sing 328 n y O3 PN NAD sing 329 n n PN O1N NAD doub 330 n n PN O2N NAD sing 331 n n PN O5D NAD sing 332 n n O5D C5D NAD sing 333 n n C5D C4D NAD sing 334 n n C5D H51N NAD sing 335 n n C5D H52N NAD sing 336 n n C4D O4D NAD sing 337 n n C4D C3D NAD sing 338 n n C4D H4D NAD sing 339 n n O4D C1D NAD sing 340 n n C3D O3D NAD sing 341 n n C3D C2D NAD sing 342 n n C3D H3D NAD sing 343 n n O3D HO3N NAD sing 344 n n C2D O2D NAD sing 345 n n C2D C1D NAD sing 346 n n C2D H2D NAD sing 347 n n O2D HO2N NAD sing 348 n n C1D N1N NAD sing 349 n n C1D H1D NAD sing 350 n n N1N C2N NAD sing 351 n y N1N C6N NAD doub 352 n y C2N C3N NAD doub 353 n y C2N H2N NAD sing 354 n n C3N C7N NAD sing 355 n n C3N C4N NAD sing 356 n y C7N O7N NAD doub 357 n n C7N N7N NAD sing 358 n n N7N H71N NAD sing 359 n n N7N H72N NAD sing 360 n n C4N C5N NAD doub 361 n y C4N H4N NAD sing 362 n n C5N C6N NAD sing 363 n y C5N H5N NAD sing 364 n n C6N H6N NAD sing 365 n n # _atom_sites.entry_id 4JQC _atom_sites.fract_transf_matrix[1][1] 0.012536 _atom_sites.fract_transf_matrix[1][2] 0.007238 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 503 NAD NAD . D 3 0WE A 1 302 1 0WE LIG . E 2 NAD B 1 301 503 NAD NAD . F 3 0WE B 1 302 1 0WE LIG . G 4 HOH A 1 401 8 HOH HOH . G 4 HOH A 2 402 15 HOH HOH . G 4 HOH A 3 403 17 HOH HOH . G 4 HOH A 4 404 24 HOH HOH . G 4 HOH A 5 405 25 HOH HOH . G 4 HOH A 6 406 65 HOH HOH . G 4 HOH A 7 407 94 HOH HOH . G 4 HOH A 8 408 99 HOH HOH . G 4 HOH A 9 409 112 HOH HOH . G 4 HOH A 10 410 121 HOH HOH . G 4 HOH A 11 411 124 HOH HOH . H 4 HOH B 1 401 5 HOH HOH . H 4 HOH B 2 402 7 HOH HOH . H 4 HOH B 3 403 16 HOH HOH . H 4 HOH B 4 404 19 HOH HOH . H 4 HOH B 5 405 26 HOH HOH . H 4 HOH B 6 406 38 HOH HOH . H 4 HOH B 7 407 49 HOH HOH . H 4 HOH B 8 408 68 HOH HOH . H 4 HOH B 9 409 77 HOH HOH . H 4 HOH B 10 410 84 HOH HOH . H 4 HOH B 11 411 107 HOH HOH . H 4 HOH B 12 412 109 HOH HOH . H 4 HOH B 13 413 110 HOH HOH . H 4 HOH B 14 414 122 HOH HOH . H 4 HOH B 15 415 125 HOH HOH . H 4 HOH B 16 416 127 HOH HOH . H 4 HOH B 17 417 128 HOH HOH . H 4 HOH B 18 418 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 -6.481 16.346 26.609 1 55.2 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . C 2 -7.233 15.126 26.212 1 55.21 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . C 2 -5.186 16.142 27.305 1 55.29 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . C 2 -6.136 17.182 25.191 1 55.81 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . C 2 -5.213 16.702 24.248 1 56.23 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . C 2 -6.008 16.234 23.029 1 56.61 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . C 2 -5.16 16.242 21.901 1 57.02 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . C 2 -6.553 14.801 23.147 1 56.62 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . C 2 -7.969 14.835 23.327 1 56.14 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . C 2 -6.122 14.086 21.855 1 56.76 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . C 2 -7.231 13.451 21.221 1 56.57 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . C 2 -5.561 15.24 21.024 1 57.07 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . C 2 -4.355 14.944 20.208 1 57.19 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . C 2 -3.03 15.074 20.575 1 57.14 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . C 2 -2.239 15.417 19.58 1 57 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . C 2 -3.064 15.404 18.454 1 56.9 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . C 2 -2.927 15.741 17.075 1 57.06 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . C 2 -1.811 16.244 16.532 1 57.22 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . C 2 -3.99 15.563 16.254 1 57.06 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . C 2 -5.144 15.093 16.743 1 57.07 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . C 2 -5.427 14.792 18.012 1 57.16 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . C 2 -4.357 14.963 18.837 1 57.12 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . C 2 -7.49 17.41 27.421 1 53.51 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . C 2 -7.179 18.972 27.95 1 52.03 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . C 2 -8.423 19.618 28.446 1 52.23 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . C 2 -6.017 18.988 28.867 1 52.07 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . C 2 -6.698 19.875 26.612 1 51.25 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . C 2 -7.604 20.179 25.567 1 50.52 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . C 2 -7.269 21.567 25.019 1 50.12 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . C 2 -7.579 22.552 26.006 1 49.78 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . C 2 -5.774 21.754 24.683 1 49.84 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . C 2 -5.652 22.546 23.505 1 49.68 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . C 2 -5.223 22.514 25.887 1 49.74 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . C 2 -4.086 23.277 25.502 1 49.75 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . C 2 -6.454 23.357 26.246 1 49.69 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . C 2 -6.467 23.789 27.676 1 49.39 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . C 2 -6.339 22.856 28.734 1 49.33 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . C 2 -6.167 23.271 30.065 1 49.23 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . C 2 -5.911 22.243 31.119 1 49.01 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . C 2 -6.142 21.052 30.941 1 48.96 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . C 2 -5.356 22.692 32.231 1 48.64 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . C 2 -6.269 24.644 30.386 1 49.14 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . C 2 -6.494 25.587 29.368 1 49.1 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . C 2 -6.591 25.161 28.03 1 48.92 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #