data_4JQH # _model_server_result.job_id OECo-wXSvw1EWUxaxHX46Q _model_server_result.datetime_utc '2025-01-13 09:47:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4JQH # _exptl.entry_id 4JQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 629.741 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4-{[(4-carboxybutyl)(2-{2-[(4'-phenoxybiphenyl-4-yl)methoxy]phenyl}ethyl)amino]methyl}benzoic acid" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JQH _cell.length_a 122.191 _cell.length_b 122.191 _cell.length_c 122.191 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 PISA hexameric 6 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 A,C,D,G 2 1,3,4 B,E,F,H 3 1,3,4 A,B,C,D,E,F,G,H 4 1,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -61.0955 0 61.0955 3 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 4 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C40 H39 N O6' _chem_comp.formula_weight 629.741 _chem_comp.id 1MF _chem_comp.mon_nstd_flag . _chem_comp.name "4-{[(4-carboxybutyl)(2-{2-[(4'-phenoxybiphenyl-4-yl)methoxy]phenyl}ethyl)amino]methyl}benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAE CAF 1MF doub 1 n y CAE CAG 1MF sing 2 n y CAF CAJ 1MF sing 3 n y CAG CAK 1MF doub 4 n y CAJ CBN 1MF doub 5 n y CAK CBN 1MF sing 6 n y CBN OBI 1MF sing 7 n n OBI CBO 1MF sing 8 n n CAR CBO 1MF doub 9 n y CAR CAX 1MF sing 10 n y CBO CAS 1MF sing 11 n y CAX CBR 1MF doub 12 n y CAS CAY 1MF doub 13 n y CBR CAY 1MF sing 14 n y CBR CBQ 1MF sing 15 n n CAV CBQ 1MF doub 16 n y CAV CAN 1MF sing 17 n y CBQ CAW 1MF sing 18 n y OAB CBK 1MF doub 19 n n CAN CBL 1MF doub 20 n y CAW CAO 1MF doub 21 n y CAT CAL 1MF doub 22 n y CAT CBP 1MF sing 23 n y CBL CAO 1MF sing 24 n y CBL CBF 1MF sing 25 n n CBK CBP 1MF sing 26 n n CBK OAD 1MF sing 27 n n CAL CBM 1MF sing 28 n y CBP CAU 1MF doub 29 n y CBF OBH 1MF sing 30 n n OBH CBT 1MF sing 31 n n CBM CBG 1MF sing 32 n n CBM CAM 1MF doub 33 n y CBC CBS 1MF sing 34 n n CBC CBE 1MF sing 35 n n CAU CAM 1MF sing 36 n y CBG NBU 1MF sing 37 n n CBT CBS 1MF doub 38 n y CBT CAQ 1MF sing 39 n y CBS CAP 1MF sing 40 n y CAQ CAI 1MF doub 41 n y OAC CBJ 1MF doub 42 n n CAP CAH 1MF doub 43 n y CAI CAH 1MF sing 44 n y CBE NBU 1MF sing 45 n n NBU CBD 1MF sing 46 n n CBJ OAA 1MF sing 47 n n CBJ CBB 1MF sing 48 n n CBB CAZ 1MF sing 49 n n CBD CBA 1MF sing 50 n n CAZ CBA 1MF sing 51 n n OAD H1 1MF sing 52 n n CAU H2 1MF sing 53 n n CAM H3 1MF sing 54 n n CAT H4 1MF sing 55 n n CAL H5 1MF sing 56 n n CBG H6 1MF sing 57 n n CBG H7 1MF sing 58 n n CBD H9 1MF sing 59 n n CBD H10 1MF sing 60 n n CBA H11 1MF sing 61 n n CBA H12 1MF sing 62 n n CAZ H13 1MF sing 63 n n CAZ H14 1MF sing 64 n n CBB H15 1MF sing 65 n n CBB H16 1MF sing 66 n n OAA H17 1MF sing 67 n n CBE H18 1MF sing 68 n n CBE H19 1MF sing 69 n n CBC H20 1MF sing 70 n n CBC H21 1MF sing 71 n n CAP H22 1MF sing 72 n n CAH H23 1MF sing 73 n n CAI H24 1MF sing 74 n n CAQ H25 1MF sing 75 n n CBF H26 1MF sing 76 n n CBF H27 1MF sing 77 n n CAO H28 1MF sing 78 n n CAW H29 1MF sing 79 n n CAV H30 1MF sing 80 n n CAN H31 1MF sing 81 n n CAY H32 1MF sing 82 n n CAS H33 1MF sing 83 n n CAR H34 1MF sing 84 n n CAX H35 1MF sing 85 n n CAJ H36 1MF sing 86 n n CAF H37 1MF sing 87 n n CAE H38 1MF sing 88 n n CAG H39 1MF sing 89 n n CAK H40 1MF sing 90 n n # _atom_sites.entry_id 4JQH _atom_sites.fract_transf_matrix[1][1] 0.008184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1MF A 1 201 1 1MF DRG . D 3 MLA A 1 202 1 MLA MLI . E 2 1MF B 1 201 1 1MF DRG . F 3 MLA B 1 202 1 MLA MLI . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 2 HOH HOH . G 4 HOH A 3 303 6 HOH HOH . G 4 HOH A 4 304 9 HOH HOH . G 4 HOH A 5 305 11 HOH HOH . G 4 HOH A 6 306 12 HOH HOH . G 4 HOH A 7 307 18 HOH HOH . G 4 HOH A 8 308 20 HOH HOH . G 4 HOH A 9 309 23 HOH HOH . G 4 HOH A 10 310 24 HOH HOH . G 4 HOH A 11 311 26 HOH HOH . G 4 HOH A 12 312 29 HOH HOH . G 4 HOH A 13 313 31 HOH HOH . G 4 HOH A 14 314 32 HOH HOH . G 4 HOH A 15 315 33 HOH HOH . G 4 HOH A 16 316 34 HOH HOH . G 4 HOH A 17 317 35 HOH HOH . G 4 HOH A 18 318 36 HOH HOH . G 4 HOH A 19 319 40 HOH HOH . G 4 HOH A 20 320 43 HOH HOH . G 4 HOH A 21 321 45 HOH HOH . G 4 HOH A 22 322 46 HOH HOH . G 4 HOH A 23 323 47 HOH HOH . G 4 HOH A 24 324 48 HOH HOH . G 4 HOH A 25 325 51 HOH HOH . G 4 HOH A 26 326 53 HOH HOH . G 4 HOH A 27 327 54 HOH HOH . G 4 HOH A 28 328 56 HOH HOH . G 4 HOH A 29 329 65 HOH HOH . G 4 HOH A 30 330 68 HOH HOH . G 4 HOH A 31 331 71 HOH HOH . G 4 HOH A 32 332 75 HOH HOH . G 4 HOH A 33 333 76 HOH HOH . G 4 HOH A 34 334 77 HOH HOH . G 4 HOH A 35 335 78 HOH HOH . G 4 HOH A 36 336 80 HOH HOH . G 4 HOH A 37 337 81 HOH HOH . G 4 HOH A 38 338 83 HOH HOH . G 4 HOH A 39 339 84 HOH HOH . G 4 HOH A 40 340 85 HOH HOH . G 4 HOH A 41 341 86 HOH HOH . G 4 HOH A 42 342 90 HOH HOH . G 4 HOH A 43 343 92 HOH HOH . G 4 HOH A 44 344 93 HOH HOH . G 4 HOH A 45 345 96 HOH HOH . G 4 HOH A 46 346 97 HOH HOH . G 4 HOH A 47 347 103 HOH HOH . G 4 HOH A 48 348 105 HOH HOH . G 4 HOH A 49 349 107 HOH HOH . G 4 HOH A 50 350 108 HOH HOH . G 4 HOH A 51 351 109 HOH HOH . G 4 HOH A 52 352 110 HOH HOH . G 4 HOH A 53 353 114 HOH HOH . G 4 HOH A 54 354 116 HOH HOH . H 4 HOH B 1 301 3 HOH HOH . H 4 HOH B 2 302 4 HOH HOH . H 4 HOH B 3 303 5 HOH HOH . H 4 HOH B 4 304 7 HOH HOH . H 4 HOH B 5 305 8 HOH HOH . H 4 HOH B 6 306 10 HOH HOH . H 4 HOH B 7 307 13 HOH HOH . H 4 HOH B 8 308 14 HOH HOH . H 4 HOH B 9 309 15 HOH HOH . H 4 HOH B 10 310 16 HOH HOH . H 4 HOH B 11 311 17 HOH HOH . H 4 HOH B 12 312 19 HOH HOH . H 4 HOH B 13 313 21 HOH HOH . H 4 HOH B 14 314 22 HOH HOH . H 4 HOH B 15 315 25 HOH HOH . H 4 HOH B 16 316 27 HOH HOH . H 4 HOH B 17 317 28 HOH HOH . H 4 HOH B 18 318 30 HOH HOH . H 4 HOH B 19 319 37 HOH HOH . H 4 HOH B 20 320 38 HOH HOH . H 4 HOH B 21 321 39 HOH HOH . H 4 HOH B 22 322 41 HOH HOH . H 4 HOH B 23 323 42 HOH HOH . H 4 HOH B 24 324 44 HOH HOH . H 4 HOH B 25 325 49 HOH HOH . H 4 HOH B 26 326 50 HOH HOH . H 4 HOH B 27 327 52 HOH HOH . H 4 HOH B 28 328 55 HOH HOH . H 4 HOH B 29 329 57 HOH HOH . H 4 HOH B 30 330 58 HOH HOH . H 4 HOH B 31 331 59 HOH HOH . H 4 HOH B 32 332 60 HOH HOH . H 4 HOH B 33 333 61 HOH HOH . H 4 HOH B 34 334 62 HOH HOH . H 4 HOH B 35 335 63 HOH HOH . H 4 HOH B 36 336 64 HOH HOH . H 4 HOH B 37 337 66 HOH HOH . H 4 HOH B 38 338 67 HOH HOH . H 4 HOH B 39 339 69 HOH HOH . H 4 HOH B 40 340 70 HOH HOH . H 4 HOH B 41 341 72 HOH HOH . H 4 HOH B 42 342 73 HOH HOH . H 4 HOH B 43 343 74 HOH HOH . H 4 HOH B 44 344 79 HOH HOH . H 4 HOH B 45 345 82 HOH HOH . H 4 HOH B 46 346 87 HOH HOH . H 4 HOH B 47 347 88 HOH HOH . H 4 HOH B 48 348 89 HOH HOH . H 4 HOH B 49 349 91 HOH HOH . H 4 HOH B 50 350 94 HOH HOH . H 4 HOH B 51 351 95 HOH HOH . H 4 HOH B 52 352 98 HOH HOH . H 4 HOH B 53 353 99 HOH HOH . H 4 HOH B 54 354 100 HOH HOH . H 4 HOH B 55 355 101 HOH HOH . H 4 HOH B 56 356 102 HOH HOH . H 4 HOH B 57 357 104 HOH HOH . H 4 HOH B 58 358 106 HOH HOH . H 4 HOH B 59 359 111 HOH HOH . H 4 HOH B 60 360 112 HOH HOH . H 4 HOH B 61 361 113 HOH HOH . H 4 HOH B 62 362 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD 1MF . . . C 2 -19.01 -15.958 2.852 1 35.42 ? OAD 1MF 201 A 1 HETATM 2 C CBK 1MF . . . C 2 -19.819 -15.169 2.337 1 31.58 ? CBK 1MF 201 A 1 HETATM 3 O OAB 1MF . . . C 2 -20.768 -15.594 1.627 1 43.73 ? OAB 1MF 201 A 1 HETATM 4 C CBP 1MF . . . C 2 -19.662 -13.701 2.642 1 35.15 ? CBP 1MF 201 A 1 HETATM 5 C CAU 1MF . . . C 2 -18.655 -13.26 3.512 1 33.22 ? CAU 1MF 201 A 1 HETATM 6 C CAM 1MF . . . C 2 -18.531 -11.887 3.81 1 31.85 ? CAM 1MF 201 A 1 HETATM 7 C CAT 1MF . . . C 2 -20.548 -12.771 2.094 1 31.86 ? CAT 1MF 201 A 1 HETATM 8 C CAL 1MF . . . C 2 -20.423 -11.413 2.398 1 41.12 ? CAL 1MF 201 A 1 HETATM 9 C CBM 1MF . . . C 2 -19.424 -10.955 3.264 1 44.69 ? CBM 1MF 201 A 1 HETATM 10 C CBG 1MF . . . C 2 -19.317 -9.459 3.558 1 29.3 ? CBG 1MF 201 A 1 HETATM 11 N NBU 1MF . . . C 2 -19.93 -8.93 4.815 1 39.51 ? NBU 1MF 201 A 1 HETATM 12 C CBD 1MF . . . C 2 -20.679 -9.97 5.554 1 23.74 ? CBD 1MF 201 A 1 HETATM 13 C CBA 1MF . . . C 2 -21.788 -9.569 6.536 1 36.74 ? CBA 1MF 201 A 1 HETATM 14 C CAZ 1MF . . . C 2 -23.204 -9.997 6.098 1 58.14 ? CAZ 1MF 201 A 1 HETATM 15 C CBB 1MF . . . C 2 -23.262 -11.335 5.342 1 39.79 ? CBB 1MF 201 A 1 HETATM 16 C CBJ 1MF . . . C 2 -24.651 -11.742 4.88 1 37.92 ? CBJ 1MF 201 A 1 HETATM 17 O OAC 1MF . . . C 2 -24.784 -12.846 4.317 1 38.13 ? OAC 1MF 201 A 1 HETATM 18 O OAA 1MF . . . C 2 -25.63 -10.991 5.054 1 34.32 ? OAA 1MF 201 A 1 HETATM 19 C CBE 1MF . . . C 2 -20.682 -7.647 4.63 1 36.96 ? CBE 1MF 201 A 1 HETATM 20 C CBC 1MF . . . C 2 -20.182 -6.769 3.47 1 36.36 ? CBC 1MF 201 A 1 HETATM 21 C CBS 1MF . . . C 2 -19.867 -5.319 3.848 1 34.56 ? CBS 1MF 201 A 1 HETATM 22 C CAP 1MF . . . C 2 -20.875 -4.495 4.36 1 36.74 ? CAP 1MF 201 A 1 HETATM 23 C CAH 1MF . . . C 2 -20.582 -3.174 4.713 1 37.66 ? CAH 1MF 201 A 1 HETATM 24 C CAI 1MF . . . C 2 -19.287 -2.666 4.515 1 37.42 ? CAI 1MF 201 A 1 HETATM 25 C CAQ 1MF . . . C 2 -18.281 -3.474 3.962 1 27.45 ? CAQ 1MF 201 A 1 HETATM 26 C CBT 1MF . . . C 2 -18.574 -4.799 3.629 1 41.66 ? CBT 1MF 201 A 1 HETATM 27 O OBH 1MF . . . C 2 -17.627 -5.631 3.068 1 57.07 ? OBH 1MF 201 A 1 HETATM 28 C CBF 1MF . . . C 2 -16.242 -5.367 2.684 1 54.06 ? CBF 1MF 201 A 1 HETATM 29 C CBL 1MF . . . C 2 -15.585 -6.623 2.264 1 35.06 ? CBL 1MF 201 A 1 HETATM 30 C CAO 1MF . . . C 2 -16.4 -7.743 2.308 1 75.19 ? CAO 1MF 201 A 1 HETATM 31 C CAW 1MF . . . C 2 -15.922 -8.988 1.944 1 41.45 ? CAW 1MF 201 A 1 HETATM 32 C CBQ 1MF . . . C 2 -14.606 -9.151 1.546 1 63.48 ? CBQ 1MF 201 A 1 HETATM 33 C CAV 1MF . . . C 2 -13.774 -8.02 1.504 1 54.69 ? CAV 1MF 201 A 1 HETATM 34 C CAN 1MF . . . C 2 -14.26 -6.747 1.861 1 42.72 ? CAN 1MF 201 A 1 HETATM 35 C CBR 1MF . . . C 2 -14.216 -10.449 1.207 1 66.8 ? CBR 1MF 201 A 1 HETATM 36 C CAY 1MF . . . C 2 -15.157 -11.483 1.313 1 76.92 ? CAY 1MF 201 A 1 HETATM 37 C CAS 1MF . . . C 2 -14.83 -12.8 0.992 1 95.64 ? CAS 1MF 201 A 1 HETATM 38 C CBO 1MF . . . C 2 -13.544 -13.113 0.551 1 97.31 ? CBO 1MF 201 A 1 HETATM 39 C CAR 1MF . . . C 2 -12.596 -12.088 0.457 1 56.13 ? CAR 1MF 201 A 1 HETATM 40 C CAX 1MF . . . C 2 -12.926 -10.767 0.78 1 77.73 ? CAX 1MF 201 A 1 HETATM 41 O OBI 1MF . . . C 2 -13.26 -14.433 0.259 1 99.58 ? OBI 1MF 201 A 1 HETATM 42 C CBN 1MF . . . C 2 -12.311 -14.91 -0.618 1 130.69 ? CBN 1MF 201 A 1 HETATM 43 C CAJ 1MF . . . C 2 -11.242 -14.131 -1.069 1 130.67 ? CAJ 1MF 201 A 1 HETATM 44 C CAF 1MF . . . C 2 -10.313 -14.656 -1.962 1 136.45 ? CAF 1MF 201 A 1 HETATM 45 C CAE 1MF . . . C 2 -10.441 -15.972 -2.405 1 148.38 ? CAE 1MF 201 A 1 HETATM 46 C CAG 1MF . . . C 2 -11.497 -16.758 -1.949 1 146.39 ? CAG 1MF 201 A 1 HETATM 47 C CAK 1MF . . . C 2 -12.428 -16.226 -1.061 1 134.22 ? CAK 1MF 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 47 #