data_4JQH # _model_server_result.job_id 9ahXPppsajOUW97kljqWYg _model_server_result.datetime_utc '2025-01-13 09:49:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 4JQH # _exptl.entry_id 4JQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JQH _cell.length_a 122.191 _cell.length_b 122.191 _cell.length_c 122.191 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 PISA hexameric 6 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 A,C,D,G 2 1,3,4 B,E,F,H 3 1,3,4 A,B,C,D,E,F,G,H 4 1,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -61.0955 0 61.0955 3 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 4 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 327 n n C1 O1B MLA doub 328 n n C1 C2 MLA sing 329 n n O1A H1A MLA sing 330 n n C2 C3 MLA sing 331 n n C2 HC21 MLA sing 332 n n C2 HC22 MLA sing 333 n n C3 O3A MLA doub 334 n n C3 O3B MLA sing 335 n n O3B H3B MLA sing 336 n n # _atom_sites.entry_id 4JQH _atom_sites.fract_transf_matrix[1][1] 0.008184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1MF A 1 201 1 1MF DRG . D 3 MLA A 1 202 1 MLA MLI . E 2 1MF B 1 201 1 1MF DRG . F 3 MLA B 1 202 1 MLA MLI . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 2 HOH HOH . G 4 HOH A 3 303 6 HOH HOH . G 4 HOH A 4 304 9 HOH HOH . G 4 HOH A 5 305 11 HOH HOH . G 4 HOH A 6 306 12 HOH HOH . G 4 HOH A 7 307 18 HOH HOH . G 4 HOH A 8 308 20 HOH HOH . G 4 HOH A 9 309 23 HOH HOH . G 4 HOH A 10 310 24 HOH HOH . G 4 HOH A 11 311 26 HOH HOH . G 4 HOH A 12 312 29 HOH HOH . G 4 HOH A 13 313 31 HOH HOH . G 4 HOH A 14 314 32 HOH HOH . G 4 HOH A 15 315 33 HOH HOH . G 4 HOH A 16 316 34 HOH HOH . G 4 HOH A 17 317 35 HOH HOH . G 4 HOH A 18 318 36 HOH HOH . G 4 HOH A 19 319 40 HOH HOH . G 4 HOH A 20 320 43 HOH HOH . G 4 HOH A 21 321 45 HOH HOH . G 4 HOH A 22 322 46 HOH HOH . G 4 HOH A 23 323 47 HOH HOH . G 4 HOH A 24 324 48 HOH HOH . G 4 HOH A 25 325 51 HOH HOH . G 4 HOH A 26 326 53 HOH HOH . G 4 HOH A 27 327 54 HOH HOH . G 4 HOH A 28 328 56 HOH HOH . G 4 HOH A 29 329 65 HOH HOH . G 4 HOH A 30 330 68 HOH HOH . G 4 HOH A 31 331 71 HOH HOH . G 4 HOH A 32 332 75 HOH HOH . G 4 HOH A 33 333 76 HOH HOH . G 4 HOH A 34 334 77 HOH HOH . G 4 HOH A 35 335 78 HOH HOH . G 4 HOH A 36 336 80 HOH HOH . G 4 HOH A 37 337 81 HOH HOH . G 4 HOH A 38 338 83 HOH HOH . G 4 HOH A 39 339 84 HOH HOH . G 4 HOH A 40 340 85 HOH HOH . G 4 HOH A 41 341 86 HOH HOH . G 4 HOH A 42 342 90 HOH HOH . G 4 HOH A 43 343 92 HOH HOH . G 4 HOH A 44 344 93 HOH HOH . G 4 HOH A 45 345 96 HOH HOH . G 4 HOH A 46 346 97 HOH HOH . G 4 HOH A 47 347 103 HOH HOH . G 4 HOH A 48 348 105 HOH HOH . G 4 HOH A 49 349 107 HOH HOH . G 4 HOH A 50 350 108 HOH HOH . G 4 HOH A 51 351 109 HOH HOH . G 4 HOH A 52 352 110 HOH HOH . G 4 HOH A 53 353 114 HOH HOH . G 4 HOH A 54 354 116 HOH HOH . H 4 HOH B 1 301 3 HOH HOH . H 4 HOH B 2 302 4 HOH HOH . H 4 HOH B 3 303 5 HOH HOH . H 4 HOH B 4 304 7 HOH HOH . H 4 HOH B 5 305 8 HOH HOH . H 4 HOH B 6 306 10 HOH HOH . H 4 HOH B 7 307 13 HOH HOH . H 4 HOH B 8 308 14 HOH HOH . H 4 HOH B 9 309 15 HOH HOH . H 4 HOH B 10 310 16 HOH HOH . H 4 HOH B 11 311 17 HOH HOH . H 4 HOH B 12 312 19 HOH HOH . H 4 HOH B 13 313 21 HOH HOH . H 4 HOH B 14 314 22 HOH HOH . H 4 HOH B 15 315 25 HOH HOH . H 4 HOH B 16 316 27 HOH HOH . H 4 HOH B 17 317 28 HOH HOH . H 4 HOH B 18 318 30 HOH HOH . H 4 HOH B 19 319 37 HOH HOH . H 4 HOH B 20 320 38 HOH HOH . H 4 HOH B 21 321 39 HOH HOH . H 4 HOH B 22 322 41 HOH HOH . H 4 HOH B 23 323 42 HOH HOH . H 4 HOH B 24 324 44 HOH HOH . H 4 HOH B 25 325 49 HOH HOH . H 4 HOH B 26 326 50 HOH HOH . H 4 HOH B 27 327 52 HOH HOH . H 4 HOH B 28 328 55 HOH HOH . H 4 HOH B 29 329 57 HOH HOH . H 4 HOH B 30 330 58 HOH HOH . H 4 HOH B 31 331 59 HOH HOH . H 4 HOH B 32 332 60 HOH HOH . H 4 HOH B 33 333 61 HOH HOH . H 4 HOH B 34 334 62 HOH HOH . H 4 HOH B 35 335 63 HOH HOH . H 4 HOH B 36 336 64 HOH HOH . H 4 HOH B 37 337 66 HOH HOH . H 4 HOH B 38 338 67 HOH HOH . H 4 HOH B 39 339 69 HOH HOH . H 4 HOH B 40 340 70 HOH HOH . H 4 HOH B 41 341 72 HOH HOH . H 4 HOH B 42 342 73 HOH HOH . H 4 HOH B 43 343 74 HOH HOH . H 4 HOH B 44 344 79 HOH HOH . H 4 HOH B 45 345 82 HOH HOH . H 4 HOH B 46 346 87 HOH HOH . H 4 HOH B 47 347 88 HOH HOH . H 4 HOH B 48 348 89 HOH HOH . H 4 HOH B 49 349 91 HOH HOH . H 4 HOH B 50 350 94 HOH HOH . H 4 HOH B 51 351 95 HOH HOH . H 4 HOH B 52 352 98 HOH HOH . H 4 HOH B 53 353 99 HOH HOH . H 4 HOH B 54 354 100 HOH HOH . H 4 HOH B 55 355 101 HOH HOH . H 4 HOH B 56 356 102 HOH HOH . H 4 HOH B 57 357 104 HOH HOH . H 4 HOH B 58 358 106 HOH HOH . H 4 HOH B 59 359 111 HOH HOH . H 4 HOH B 60 360 112 HOH HOH . H 4 HOH B 61 361 113 HOH HOH . H 4 HOH B 62 362 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . F 3 -52.327 -22.113 -14.583 1 121.44 ? C1 MLA 202 B 1 HETATM 2 O O1A MLA . . . F 3 -53.029 -21.207 -14.083 1 95.68 ? O1A MLA 202 B 1 HETATM 3 O O1B MLA . . . F 3 -52.795 -23.202 -14.981 1 122.06 ? O1B MLA 202 B 1 HETATM 4 C C2 MLA . . . F 3 -50.843 -21.873 -14.715 1 97.34 ? C2 MLA 202 B 1 HETATM 5 C C3 MLA . . . F 3 -50.639 -20.488 -15.281 1 83.49 ? C3 MLA 202 B 1 HETATM 6 O O3A MLA . . . F 3 -50.546 -20.355 -16.519 1 56.79 ? O3A MLA 202 B 1 HETATM 7 O O3B MLA . . . F 3 -50.581 -19.523 -14.492 1 108.59 ? O3B MLA 202 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 7 #