data_4JQI
#
_model_server_result.job_id            k8hU9Kxqhdtv3r-wGxLKRA 
_model_server_result.datetime_utc      '2024-11-23 07:07:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jqi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":304}' 
#
_entry.id    4JQI 
#
_exptl.entry_id    4JQI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JQI 
_cell.length_a            116.84 
_cell.length_b            125.128 
_cell.length_c            144.203 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JQI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,N,Q 1 1 
B,C,G,H,I,J,K,L,M,O,P 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 25 H CYS 25 1_555 B SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 B SG CYS 150 H CYS 150 1_555 B SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 C SG CYS 24 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 D C ARG 4 V ARG 346 1_555 D N TPO 5 V TPO 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 D C TPO 5 V TPO 347 1_555 D N PRO 6 V PRO 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale3 D C PRO 7 V PRO 349 1_555 D N SEP 8 V SEP 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 D C SEP 8 V SEP 350 1_555 D N LEU 9 V LEU 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 D C GLU 14 V GLU 356 1_555 D N SEP 15 V SEP 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 D C SEP 15 V SEP 357 1_555 D N CYS 16 V CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 D C CYS 16 V CYS 358 1_555 D N TPO 17 V TPO 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 D C TPO 17 V TPO 359 1_555 D N TPO 18 V TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 D C TPO 18 V TPO 360 1_555 D N ALA 19 V ALA 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 D C ALA 19 V ALA 361 1_555 D N SEP 20 V SEP 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale11 D C SEP 20 V SEP 362 1_555 D N SEP 21 V SEP 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 D C SEP 21 V SEP 363 1_555 D N SEP 22 V SEP 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale13 D C SEP 22 V SEP 364 1_555 D N LEU 23 V LEU 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4JQI 
_atom_sites.fract_transf_matrix[1][1]    0.008559 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007992 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 CL A 1 401 401 CL CL . 
F 6 EDO A 1 402 402 EDO EDO . 
G 5 CL H 1 301 301 CL CL . 
H 6 EDO H 1 302 302 EDO EDO . 
I 6 EDO H 1 303 303 EDO EDO . 
J 6 EDO H 1 304 304 EDO EDO . 
K 6 EDO L 1 301 301 EDO EDO . 
L 6 EDO L 1 302 302 EDO EDO . 
M 7 PRO L 1 303 303 PRO PRO . 
N 8 HOH A 1 501 501 HOH HOH . 
N 8 HOH A 2 502 502 HOH HOH . 
N 8 HOH A 3 503 503 HOH HOH . 
N 8 HOH A 4 504 504 HOH HOH . 
N 8 HOH A 5 505 505 HOH HOH . 
N 8 HOH A 6 506 506 HOH HOH . 
N 8 HOH A 7 507 507 HOH HOH . 
N 8 HOH A 8 508 508 HOH HOH . 
N 8 HOH A 9 509 509 HOH HOH . 
N 8 HOH A 10 510 510 HOH HOH . 
N 8 HOH A 11 511 511 HOH HOH . 
N 8 HOH A 12 512 512 HOH HOH . 
N 8 HOH A 13 513 513 HOH HOH . 
N 8 HOH A 14 514 514 HOH HOH . 
N 8 HOH A 15 515 515 HOH HOH . 
N 8 HOH A 16 516 516 HOH HOH . 
N 8 HOH A 17 517 517 HOH HOH . 
N 8 HOH A 18 518 518 HOH HOH . 
N 8 HOH A 19 519 519 HOH HOH . 
N 8 HOH A 20 520 520 HOH HOH . 
N 8 HOH A 21 521 521 HOH HOH . 
N 8 HOH A 22 522 522 HOH HOH . 
N 8 HOH A 23 523 523 HOH HOH . 
N 8 HOH A 24 524 524 HOH HOH . 
N 8 HOH A 25 525 525 HOH HOH . 
N 8 HOH A 26 526 526 HOH HOH . 
N 8 HOH A 27 527 527 HOH HOH . 
N 8 HOH A 28 528 528 HOH HOH . 
N 8 HOH A 29 529 529 HOH HOH . 
N 8 HOH A 30 530 530 HOH HOH . 
N 8 HOH A 31 531 531 HOH HOH . 
N 8 HOH A 32 532 532 HOH HOH . 
N 8 HOH A 33 533 533 HOH HOH . 
N 8 HOH A 34 534 534 HOH HOH . 
N 8 HOH A 35 535 535 HOH HOH . 
N 8 HOH A 36 536 536 HOH HOH . 
N 8 HOH A 37 537 537 HOH HOH . 
N 8 HOH A 38 538 538 HOH HOH . 
N 8 HOH A 39 539 539 HOH HOH . 
N 8 HOH A 40 540 540 HOH HOH . 
N 8 HOH A 41 541 541 HOH HOH . 
N 8 HOH A 42 542 542 HOH HOH . 
N 8 HOH A 43 543 543 HOH HOH . 
N 8 HOH A 44 544 544 HOH HOH . 
N 8 HOH A 45 545 545 HOH HOH . 
N 8 HOH A 46 546 546 HOH HOH . 
N 8 HOH A 47 547 547 HOH HOH . 
N 8 HOH A 48 548 548 HOH HOH . 
N 8 HOH A 49 549 549 HOH HOH . 
N 8 HOH A 50 550 550 HOH HOH . 
N 8 HOH A 51 551 551 HOH HOH . 
N 8 HOH A 52 552 552 HOH HOH . 
N 8 HOH A 53 553 553 HOH HOH . 
N 8 HOH A 54 554 554 HOH HOH . 
N 8 HOH A 55 555 555 HOH HOH . 
N 8 HOH A 56 556 556 HOH HOH . 
N 8 HOH A 57 557 557 HOH HOH . 
N 8 HOH A 58 558 558 HOH HOH . 
N 8 HOH A 59 559 559 HOH HOH . 
N 8 HOH A 60 560 560 HOH HOH . 
N 8 HOH A 61 561 561 HOH HOH . 
N 8 HOH A 62 562 562 HOH HOH . 
N 8 HOH A 63 563 563 HOH HOH . 
N 8 HOH A 64 564 564 HOH HOH . 
N 8 HOH A 65 565 565 HOH HOH . 
N 8 HOH A 66 566 566 HOH HOH . 
N 8 HOH A 67 567 567 HOH HOH . 
N 8 HOH A 68 568 568 HOH HOH . 
N 8 HOH A 69 569 569 HOH HOH . 
O 8 HOH H 1 401 401 HOH HOH . 
O 8 HOH H 2 402 402 HOH HOH . 
O 8 HOH H 3 403 403 HOH HOH . 
O 8 HOH H 4 404 404 HOH HOH . 
O 8 HOH H 5 405 405 HOH HOH . 
O 8 HOH H 6 406 406 HOH HOH . 
O 8 HOH H 7 407 407 HOH HOH . 
O 8 HOH H 8 408 408 HOH HOH . 
O 8 HOH H 9 409 409 HOH HOH . 
O 8 HOH H 10 410 410 HOH HOH . 
O 8 HOH H 11 411 411 HOH HOH . 
O 8 HOH H 12 412 412 HOH HOH . 
O 8 HOH H 13 413 413 HOH HOH . 
O 8 HOH H 14 414 414 HOH HOH . 
O 8 HOH H 15 415 415 HOH HOH . 
O 8 HOH H 16 416 416 HOH HOH . 
O 8 HOH H 17 417 417 HOH HOH . 
O 8 HOH H 18 418 418 HOH HOH . 
O 8 HOH H 19 419 419 HOH HOH . 
O 8 HOH H 20 420 420 HOH HOH . 
O 8 HOH H 21 421 421 HOH HOH . 
O 8 HOH H 22 422 422 HOH HOH . 
O 8 HOH H 23 423 423 HOH HOH . 
O 8 HOH H 24 424 424 HOH HOH . 
O 8 HOH H 25 425 425 HOH HOH . 
O 8 HOH H 26 426 426 HOH HOH . 
O 8 HOH H 27 427 427 HOH HOH . 
P 8 HOH L 1 401 401 HOH HOH . 
P 8 HOH L 2 402 402 HOH HOH . 
P 8 HOH L 3 403 403 HOH HOH . 
P 8 HOH L 4 404 404 HOH HOH . 
P 8 HOH L 5 405 405 HOH HOH . 
P 8 HOH L 6 406 406 HOH HOH . 
P 8 HOH L 7 407 407 HOH HOH . 
P 8 HOH L 8 408 408 HOH HOH . 
Q 8 HOH V 1 401 401 HOH HOH . 
Q 8 HOH V 2 402 402 HOH HOH . 
Q 8 HOH V 3 403 403 HOH HOH . 
Q 8 HOH V 4 404 404 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 6 4.917 -9.209 1.626 1 119.59 ? C1 EDO 304 H 1 
HETATM 2 O O1 EDO . . . J 6 5.549 -7.938 1.428 1 118.72 ? O1 EDO 304 H 1 
HETATM 3 C C2 EDO . . . J 6 4.935 -9.61 3.094 1 107.48 ? C2 EDO 304 H 1 
HETATM 4 O O2 EDO . . . J 6 3.819 -10.453 3.37 1 84.6 ? O2 EDO 304 H 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#