data_4JRA
#
_model_server_result.job_id            T80YcnjMB8WHNt1bn-fFtQ 
_model_server_result.datetime_utc      '2024-12-21 12:44:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jra 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1307}' 
#
_entry.id    4JRA 
#
_exptl.entry_id    4JRA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.02 
_cell.angle_gamma         90 
_cell.entry_id            4JRA 
_cell.length_a            115.44 
_cell.length_b            105.26 
_cell.length_c            127.96 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JRA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,L,M,P 1 1 
B,C,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 149 A SER 1002 1_555 J NA NA . A NA 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc2 A OG SER 155 A SER 1008 1_555 J NA NA . A NA 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc3 A OD2 ASP 246 A ASP 1099 1_555 K NA NA . A NA 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc4 A O TYR 251 A TYR 1104 1_555 K NA NA . A NA 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc5 A OH TYR 258 A TYR 1111 1_555 K NA NA . A NA 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4JRA 
_atom_sites.fract_transf_matrix[1][1]    0.008663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000003 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007815 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 CL A 1 1301 1 CL CL . 
F 3 CL A 1 1302 1 CL CL . 
G 3 CL A 1 1303 1 CL CL . 
H 3 CL A 1 1304 1 CL CL . 
I 3 CL A 1 1305 1 CL CL . 
J 4 NA A 1 1306 1 NA NA . 
K 4 NA A 1 1307 1 NA NA . 
L 3 CL A 1 1308 1 CL CL . 
M 5 HOH A 1 1401 2 HOH HOH . 
M 5 HOH A 2 1402 8 HOH HOH . 
M 5 HOH A 3 1403 11 HOH HOH . 
M 5 HOH A 4 1404 12 HOH HOH . 
M 5 HOH A 5 1405 13 HOH HOH . 
M 5 HOH A 6 1406 15 HOH HOH . 
M 5 HOH A 7 1407 16 HOH HOH . 
M 5 HOH A 8 1408 17 HOH HOH . 
M 5 HOH A 9 1409 29 HOH HOH . 
M 5 HOH A 10 1410 30 HOH HOH . 
M 5 HOH A 11 1411 31 HOH HOH . 
M 5 HOH A 12 1412 32 HOH HOH . 
M 5 HOH A 13 1413 33 HOH HOH . 
M 5 HOH A 14 1414 34 HOH HOH . 
M 5 HOH A 15 1415 42 HOH HOH . 
M 5 HOH A 16 1416 43 HOH HOH . 
M 5 HOH A 17 1417 44 HOH HOH . 
M 5 HOH A 18 1418 45 HOH HOH . 
M 5 HOH A 19 1419 46 HOH HOH . 
M 5 HOH A 20 1420 47 HOH HOH . 
M 5 HOH A 21 1421 48 HOH HOH . 
M 5 HOH A 22 1422 50 HOH HOH . 
M 5 HOH A 23 1423 51 HOH HOH . 
M 5 HOH A 24 1424 52 HOH HOH . 
M 5 HOH A 25 1425 58 HOH HOH . 
M 5 HOH A 26 1426 59 HOH HOH . 
M 5 HOH A 27 1427 60 HOH HOH . 
M 5 HOH A 28 1428 63 HOH HOH . 
M 5 HOH A 29 1429 72 HOH HOH . 
M 5 HOH A 30 1430 73 HOH HOH . 
M 5 HOH A 31 1431 74 HOH HOH . 
M 5 HOH A 32 1432 76 HOH HOH . 
M 5 HOH A 33 1433 77 HOH HOH . 
M 5 HOH A 34 1434 78 HOH HOH . 
M 5 HOH A 35 1435 79 HOH HOH . 
M 5 HOH A 36 1436 80 HOH HOH . 
M 5 HOH A 37 1437 81 HOH HOH . 
M 5 HOH A 38 1438 88 HOH HOH . 
M 5 HOH A 39 1439 94 HOH HOH . 
M 5 HOH A 40 1440 95 HOH HOH . 
M 5 HOH A 41 1441 96 HOH HOH . 
M 5 HOH A 42 1442 97 HOH HOH . 
M 5 HOH A 43 1443 98 HOH HOH . 
M 5 HOH A 44 1444 100 HOH HOH . 
M 5 HOH A 45 1445 101 HOH HOH . 
M 5 HOH A 46 1446 102 HOH HOH . 
M 5 HOH A 47 1447 103 HOH HOH . 
M 5 HOH A 48 1448 108 HOH HOH . 
M 5 HOH A 49 1449 109 HOH HOH . 
M 5 HOH A 50 1450 110 HOH HOH . 
N 5 HOH B 1 1301 18 HOH HOH . 
N 5 HOH B 2 1302 40 HOH HOH . 
N 5 HOH B 3 1303 54 HOH HOH . 
N 5 HOH B 4 1304 55 HOH HOH . 
N 5 HOH B 5 1305 56 HOH HOH . 
N 5 HOH B 6 1306 65 HOH HOH . 
N 5 HOH B 7 1307 66 HOH HOH . 
N 5 HOH B 8 1308 67 HOH HOH . 
N 5 HOH B 9 1309 75 HOH HOH . 
N 5 HOH B 10 1310 84 HOH HOH . 
N 5 HOH B 11 1311 85 HOH HOH . 
N 5 HOH B 12 1312 89 HOH HOH . 
N 5 HOH B 13 1313 90 HOH HOH . 
N 5 HOH B 14 1314 92 HOH HOH . 
N 5 HOH B 15 1315 93 HOH HOH . 
N 5 HOH B 16 1316 104 HOH HOH . 
N 5 HOH B 17 1317 105 HOH HOH . 
N 5 HOH B 18 1318 107 HOH HOH . 
O 5 HOH C 1 601 19 HOH HOH . 
O 5 HOH C 2 602 20 HOH HOH . 
O 5 HOH C 3 603 21 HOH HOH . 
O 5 HOH C 4 604 22 HOH HOH . 
O 5 HOH C 5 605 24 HOH HOH . 
O 5 HOH C 6 606 64 HOH HOH . 
P 5 HOH D 1 601 3 HOH HOH . 
P 5 HOH D 2 602 4 HOH HOH . 
P 5 HOH D 3 603 5 HOH HOH . 
P 5 HOH D 4 604 9 HOH HOH . 
P 5 HOH D 5 605 23 HOH HOH . 
P 5 HOH D 6 606 26 HOH HOH . 
P 5 HOH D 7 607 68 HOH HOH . 
P 5 HOH D 8 608 71 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -24.362 
_atom_site.Cartn_y               22.028 
_atom_site.Cartn_z               19.535 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.89 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1307 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#