data_4JRB # _model_server_result.job_id B9ydUuSiIhzkFi1ZShjrFw _model_server_result.datetime_utc '2024-11-14 12:18:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jrb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1304}' # _entry.id 4JRB # _exptl.entry_id 4JRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JRB _cell.length_a 91.768 _cell.length_b 141.92 _cell.length_c 93.465 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 67 A PHE 64 1_555 A N1 CR2 68 A CR2 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C3 CR2 68 A CR2 66 1_555 A N VAL 69 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 117 n n C1 H11 D12 sing 118 n n C1 H12 D12 sing 119 n n C1 H13 D12 sing 120 n n C2 C3 D12 sing 121 n n C2 H21 D12 sing 122 n n C2 H22 D12 sing 123 n n C3 C4 D12 sing 124 n n C3 H31 D12 sing 125 n n C3 H32 D12 sing 126 n n C4 C5 D12 sing 127 n n C4 H41 D12 sing 128 n n C4 H42 D12 sing 129 n n C5 C6 D12 sing 130 n n C5 H51 D12 sing 131 n n C5 H52 D12 sing 132 n n C6 C7 D12 sing 133 n n C6 H61 D12 sing 134 n n C6 H62 D12 sing 135 n n C7 C8 D12 sing 136 n n C7 H71 D12 sing 137 n n C7 H72 D12 sing 138 n n C8 C9 D12 sing 139 n n C8 H81 D12 sing 140 n n C8 H82 D12 sing 141 n n C9 C10 D12 sing 142 n n C9 H91 D12 sing 143 n n C9 H92 D12 sing 144 n n C10 C11 D12 sing 145 n n C10 H101 D12 sing 146 n n C10 H102 D12 sing 147 n n C11 C12 D12 sing 148 n n C11 H111 D12 sing 149 n n C11 H112 D12 sing 150 n n C12 H121 D12 sing 151 n n C12 H122 D12 sing 152 n n C12 H123 D12 sing 153 n n # _atom_sites.entry_id 4JRB _atom_sites.fract_transf_matrix[1][1] 0.010897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 1301 1 CL CL . C 2 CL A 1 1302 2 CL CL . D 3 PGT A 1 1303 778 PGT PC1 . E 4 D12 A 1 1304 1 D12 D4E . F 4 D12 A 1 1305 2 D12 D4E . G 4 D12 A 1 1306 3 D12 D4E . H 4 D12 A 1 1307 4 D12 D4E . I 4 D12 A 1 1308 5 D12 D4E . J 4 D12 A 1 1309 6 D12 D4E . K 5 HOH A 1 1401 1 HOH HOH . K 5 HOH A 2 1402 2 HOH HOH . K 5 HOH A 3 1403 3 HOH HOH . K 5 HOH A 4 1404 4 HOH HOH . K 5 HOH A 5 1405 5 HOH HOH . K 5 HOH A 6 1406 7 HOH HOH . K 5 HOH A 7 1407 8 HOH HOH . K 5 HOH A 8 1408 9 HOH HOH . K 5 HOH A 9 1409 10 HOH HOH . K 5 HOH A 10 1410 11 HOH HOH . K 5 HOH A 11 1411 14 HOH HOH . K 5 HOH A 12 1412 15 HOH HOH . K 5 HOH A 13 1413 17 HOH HOH . K 5 HOH A 14 1414 18 HOH HOH . K 5 HOH A 15 1415 19 HOH HOH . K 5 HOH A 16 1416 20 HOH HOH . K 5 HOH A 17 1417 21 HOH HOH . K 5 HOH A 18 1418 22 HOH HOH . K 5 HOH A 19 1419 23 HOH HOH . K 5 HOH A 20 1420 24 HOH HOH . K 5 HOH A 21 1421 25 HOH HOH . K 5 HOH A 22 1422 26 HOH HOH . K 5 HOH A 23 1423 27 HOH HOH . K 5 HOH A 24 1424 28 HOH HOH . K 5 HOH A 25 1425 29 HOH HOH . K 5 HOH A 26 1426 30 HOH HOH . K 5 HOH A 27 1427 32 HOH HOH . K 5 HOH A 28 1428 33 HOH HOH . K 5 HOH A 29 1429 35 HOH HOH . K 5 HOH A 30 1430 36 HOH HOH . K 5 HOH A 31 1431 37 HOH HOH . K 5 HOH A 32 1432 38 HOH HOH . K 5 HOH A 33 1433 39 HOH HOH . K 5 HOH A 34 1434 40 HOH HOH . K 5 HOH A 35 1435 42 HOH HOH . K 5 HOH A 36 1436 43 HOH HOH . K 5 HOH A 37 1437 46 HOH HOH . K 5 HOH A 38 1438 47 HOH HOH . K 5 HOH A 39 1439 48 HOH HOH . K 5 HOH A 40 1440 49 HOH HOH . K 5 HOH A 41 1441 50 HOH HOH . K 5 HOH A 42 1442 51 HOH HOH . K 5 HOH A 43 1443 52 HOH HOH . K 5 HOH A 44 1444 53 HOH HOH . K 5 HOH A 45 1445 55 HOH HOH . K 5 HOH A 46 1446 56 HOH HOH . K 5 HOH A 47 1447 57 HOH HOH . K 5 HOH A 48 1448 58 HOH HOH . K 5 HOH A 49 1449 59 HOH HOH . K 5 HOH A 50 1450 60 HOH HOH . K 5 HOH A 51 1451 61 HOH HOH . K 5 HOH A 52 1452 62 HOH HOH . K 5 HOH A 53 1453 63 HOH HOH . K 5 HOH A 54 1454 64 HOH HOH . K 5 HOH A 55 1455 65 HOH HOH . K 5 HOH A 56 1456 66 HOH HOH . K 5 HOH A 57 1457 67 HOH HOH . K 5 HOH A 58 1458 69 HOH HOH . K 5 HOH A 59 1459 70 HOH HOH . K 5 HOH A 60 1460 71 HOH HOH . K 5 HOH A 61 1461 74 HOH HOH . K 5 HOH A 62 1462 75 HOH HOH . K 5 HOH A 63 1463 76 HOH HOH . K 5 HOH A 64 1464 77 HOH HOH . K 5 HOH A 65 1465 78 HOH HOH . K 5 HOH A 66 1466 80 HOH HOH . K 5 HOH A 67 1467 82 HOH HOH . K 5 HOH A 68 1468 83 HOH HOH . K 5 HOH A 69 1469 84 HOH HOH . K 5 HOH A 70 1470 85 HOH HOH . K 5 HOH A 71 1471 87 HOH HOH . K 5 HOH A 72 1472 88 HOH HOH . K 5 HOH A 73 1473 89 HOH HOH . K 5 HOH A 74 1474 90 HOH HOH . K 5 HOH A 75 1475 91 HOH HOH . K 5 HOH A 76 1476 92 HOH HOH . K 5 HOH A 77 1477 93 HOH HOH . K 5 HOH A 78 1478 94 HOH HOH . K 5 HOH A 79 1479 97 HOH HOH . K 5 HOH A 80 1480 98 HOH HOH . K 5 HOH A 81 1481 99 HOH HOH . K 5 HOH A 82 1482 100 HOH HOH . K 5 HOH A 83 1483 101 HOH HOH . K 5 HOH A 84 1484 102 HOH HOH . K 5 HOH A 85 1485 104 HOH HOH . K 5 HOH A 86 1486 105 HOH HOH . K 5 HOH A 87 1487 106 HOH HOH . K 5 HOH A 88 1488 107 HOH HOH . K 5 HOH A 89 1489 108 HOH HOH . K 5 HOH A 90 1490 109 HOH HOH . K 5 HOH A 91 1491 112 HOH HOH . K 5 HOH A 92 1492 113 HOH HOH . K 5 HOH A 93 1493 114 HOH HOH . K 5 HOH A 94 1494 115 HOH HOH . K 5 HOH A 95 1495 116 HOH HOH . K 5 HOH A 96 1496 117 HOH HOH . K 5 HOH A 97 1497 119 HOH HOH . K 5 HOH A 98 1498 121 HOH HOH . K 5 HOH A 99 1499 122 HOH HOH . K 5 HOH A 100 1500 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 D12 . . . E 4 -30.088 -24.987 15.561 1 69.91 ? C3 D12 1304 A 1 HETATM 2 C C4 D12 . . . E 4 -30.268 -24.393 14.202 1 65.51 ? C4 D12 1304 A 1 HETATM 3 C C5 D12 . . . E 4 -29.037 -24.574 13.376 1 56.57 ? C5 D12 1304 A 1 HETATM 4 C C6 D12 . . . E 4 -29.12 -23.659 12.204 1 52.41 ? C6 D12 1304 A 1 HETATM 5 C C7 D12 . . . E 4 -27.754 -23.336 11.695 1 54.14 ? C7 D12 1304 A 1 HETATM 6 C C8 D12 . . . E 4 -27.765 -22.016 10.992 1 55.88 ? C8 D12 1304 A 1 HETATM 7 C C9 D12 . . . E 4 -26.548 -21.887 10.135 1 60.41 ? C9 D12 1304 A 1 HETATM 8 C C10 D12 . . . E 4 -26.621 -20.663 9.277 1 62.89 ? C10 D12 1304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #