data_4JRB
#
_model_server_result.job_id            -ncLz6_wpJbpqzKxxNARDw 
_model_server_result.datetime_utc      '2024-11-14 12:09:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jrb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1305}' 
#
_entry.id    4JRB 
#
_exptl.entry_id    4JRB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              170.335 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECANE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JRB 
_cell.length_a            91.768 
_cell.length_b            141.92 
_cell.length_c            93.465 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JRB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 67 A PHE 64 1_555 A N1 CR2 68 A CR2 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C3 CR2 68 A CR2 66 1_555 A N VAL 69 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C12 H26' 
_chem_comp.formula_weight    170.335 
_chem_comp.id                D12 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D12 sing 117 n n 
C1 H11 D12 sing 118 n n 
C1 H12 D12 sing 119 n n 
C1 H13 D12 sing 120 n n 
C2 C3 D12 sing 121 n n 
C2 H21 D12 sing 122 n n 
C2 H22 D12 sing 123 n n 
C3 C4 D12 sing 124 n n 
C3 H31 D12 sing 125 n n 
C3 H32 D12 sing 126 n n 
C4 C5 D12 sing 127 n n 
C4 H41 D12 sing 128 n n 
C4 H42 D12 sing 129 n n 
C5 C6 D12 sing 130 n n 
C5 H51 D12 sing 131 n n 
C5 H52 D12 sing 132 n n 
C6 C7 D12 sing 133 n n 
C6 H61 D12 sing 134 n n 
C6 H62 D12 sing 135 n n 
C7 C8 D12 sing 136 n n 
C7 H71 D12 sing 137 n n 
C7 H72 D12 sing 138 n n 
C8 C9 D12 sing 139 n n 
C8 H81 D12 sing 140 n n 
C8 H82 D12 sing 141 n n 
C9 C10 D12 sing 142 n n 
C9 H91 D12 sing 143 n n 
C9 H92 D12 sing 144 n n 
C10 C11 D12 sing 145 n n 
C10 H101 D12 sing 146 n n 
C10 H102 D12 sing 147 n n 
C11 C12 D12 sing 148 n n 
C11 H111 D12 sing 149 n n 
C11 H112 D12 sing 150 n n 
C12 H121 D12 sing 151 n n 
C12 H122 D12 sing 152 n n 
C12 H123 D12 sing 153 n n 
#
_atom_sites.entry_id                     4JRB 
_atom_sites.fract_transf_matrix[1][1]    0.010897 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007046 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010699 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 1301 1 CL CL . 
C 2 CL A 1 1302 2 CL CL . 
D 3 PGT A 1 1303 778 PGT PC1 . 
E 4 D12 A 1 1304 1 D12 D4E . 
F 4 D12 A 1 1305 2 D12 D4E . 
G 4 D12 A 1 1306 3 D12 D4E . 
H 4 D12 A 1 1307 4 D12 D4E . 
I 4 D12 A 1 1308 5 D12 D4E . 
J 4 D12 A 1 1309 6 D12 D4E . 
K 5 HOH A 1 1401 1 HOH HOH . 
K 5 HOH A 2 1402 2 HOH HOH . 
K 5 HOH A 3 1403 3 HOH HOH . 
K 5 HOH A 4 1404 4 HOH HOH . 
K 5 HOH A 5 1405 5 HOH HOH . 
K 5 HOH A 6 1406 7 HOH HOH . 
K 5 HOH A 7 1407 8 HOH HOH . 
K 5 HOH A 8 1408 9 HOH HOH . 
K 5 HOH A 9 1409 10 HOH HOH . 
K 5 HOH A 10 1410 11 HOH HOH . 
K 5 HOH A 11 1411 14 HOH HOH . 
K 5 HOH A 12 1412 15 HOH HOH . 
K 5 HOH A 13 1413 17 HOH HOH . 
K 5 HOH A 14 1414 18 HOH HOH . 
K 5 HOH A 15 1415 19 HOH HOH . 
K 5 HOH A 16 1416 20 HOH HOH . 
K 5 HOH A 17 1417 21 HOH HOH . 
K 5 HOH A 18 1418 22 HOH HOH . 
K 5 HOH A 19 1419 23 HOH HOH . 
K 5 HOH A 20 1420 24 HOH HOH . 
K 5 HOH A 21 1421 25 HOH HOH . 
K 5 HOH A 22 1422 26 HOH HOH . 
K 5 HOH A 23 1423 27 HOH HOH . 
K 5 HOH A 24 1424 28 HOH HOH . 
K 5 HOH A 25 1425 29 HOH HOH . 
K 5 HOH A 26 1426 30 HOH HOH . 
K 5 HOH A 27 1427 32 HOH HOH . 
K 5 HOH A 28 1428 33 HOH HOH . 
K 5 HOH A 29 1429 35 HOH HOH . 
K 5 HOH A 30 1430 36 HOH HOH . 
K 5 HOH A 31 1431 37 HOH HOH . 
K 5 HOH A 32 1432 38 HOH HOH . 
K 5 HOH A 33 1433 39 HOH HOH . 
K 5 HOH A 34 1434 40 HOH HOH . 
K 5 HOH A 35 1435 42 HOH HOH . 
K 5 HOH A 36 1436 43 HOH HOH . 
K 5 HOH A 37 1437 46 HOH HOH . 
K 5 HOH A 38 1438 47 HOH HOH . 
K 5 HOH A 39 1439 48 HOH HOH . 
K 5 HOH A 40 1440 49 HOH HOH . 
K 5 HOH A 41 1441 50 HOH HOH . 
K 5 HOH A 42 1442 51 HOH HOH . 
K 5 HOH A 43 1443 52 HOH HOH . 
K 5 HOH A 44 1444 53 HOH HOH . 
K 5 HOH A 45 1445 55 HOH HOH . 
K 5 HOH A 46 1446 56 HOH HOH . 
K 5 HOH A 47 1447 57 HOH HOH . 
K 5 HOH A 48 1448 58 HOH HOH . 
K 5 HOH A 49 1449 59 HOH HOH . 
K 5 HOH A 50 1450 60 HOH HOH . 
K 5 HOH A 51 1451 61 HOH HOH . 
K 5 HOH A 52 1452 62 HOH HOH . 
K 5 HOH A 53 1453 63 HOH HOH . 
K 5 HOH A 54 1454 64 HOH HOH . 
K 5 HOH A 55 1455 65 HOH HOH . 
K 5 HOH A 56 1456 66 HOH HOH . 
K 5 HOH A 57 1457 67 HOH HOH . 
K 5 HOH A 58 1458 69 HOH HOH . 
K 5 HOH A 59 1459 70 HOH HOH . 
K 5 HOH A 60 1460 71 HOH HOH . 
K 5 HOH A 61 1461 74 HOH HOH . 
K 5 HOH A 62 1462 75 HOH HOH . 
K 5 HOH A 63 1463 76 HOH HOH . 
K 5 HOH A 64 1464 77 HOH HOH . 
K 5 HOH A 65 1465 78 HOH HOH . 
K 5 HOH A 66 1466 80 HOH HOH . 
K 5 HOH A 67 1467 82 HOH HOH . 
K 5 HOH A 68 1468 83 HOH HOH . 
K 5 HOH A 69 1469 84 HOH HOH . 
K 5 HOH A 70 1470 85 HOH HOH . 
K 5 HOH A 71 1471 87 HOH HOH . 
K 5 HOH A 72 1472 88 HOH HOH . 
K 5 HOH A 73 1473 89 HOH HOH . 
K 5 HOH A 74 1474 90 HOH HOH . 
K 5 HOH A 75 1475 91 HOH HOH . 
K 5 HOH A 76 1476 92 HOH HOH . 
K 5 HOH A 77 1477 93 HOH HOH . 
K 5 HOH A 78 1478 94 HOH HOH . 
K 5 HOH A 79 1479 97 HOH HOH . 
K 5 HOH A 80 1480 98 HOH HOH . 
K 5 HOH A 81 1481 99 HOH HOH . 
K 5 HOH A 82 1482 100 HOH HOH . 
K 5 HOH A 83 1483 101 HOH HOH . 
K 5 HOH A 84 1484 102 HOH HOH . 
K 5 HOH A 85 1485 104 HOH HOH . 
K 5 HOH A 86 1486 105 HOH HOH . 
K 5 HOH A 87 1487 106 HOH HOH . 
K 5 HOH A 88 1488 107 HOH HOH . 
K 5 HOH A 89 1489 108 HOH HOH . 
K 5 HOH A 90 1490 109 HOH HOH . 
K 5 HOH A 91 1491 112 HOH HOH . 
K 5 HOH A 92 1492 113 HOH HOH . 
K 5 HOH A 93 1493 114 HOH HOH . 
K 5 HOH A 94 1494 115 HOH HOH . 
K 5 HOH A 95 1495 116 HOH HOH . 
K 5 HOH A 96 1496 117 HOH HOH . 
K 5 HOH A 97 1497 119 HOH HOH . 
K 5 HOH A 98 1498 121 HOH HOH . 
K 5 HOH A 99 1499 122 HOH HOH . 
K 5 HOH A 100 1500 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 D12 . . . F 4 -25.54 -20.298 14.592 1 78.59 ? C3 D12 1305 A 1 
HETATM 2 C C4 D12 . . . F 4 -24.256 -19.801 14.013 1 79.78 ? C4 D12 1305 A 1 
HETATM 3 C C5 D12 . . . F 4 -23.668 -20.863 13.141 1 79.71 ? C5 D12 1305 A 1 
HETATM 4 C C6 D12 . . . F 4 -23.096 -20.273 11.891 1 76.93 ? C6 D12 1305 A 1 
HETATM 5 C C7 D12 . . . F 4 -22.774 -21.352 10.904 1 75.34 ? C7 D12 1305 A 1 
HETATM 6 C C8 D12 . . . F 4 -21.305 -21.627 10.888 1 71.89 ? C8 D12 1305 A 1 
HETATM 7 C C9 D12 . . . F 4 -20.978 -22.622 9.824 1 70.06 ? C9 D12 1305 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           7 
#