data_4JRE
#
_model_server_result.job_id            LkgCAv1vE6SSg6rwzBqGQQ 
_model_server_result.datetime_utc      '2024-11-24 09:49:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jre 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":502}' 
#
_entry.id    4JRE 
#
_exptl.entry_id    4JRE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.182 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl alpha-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         100.07 
_cell.angle_beta          96.38 
_cell.angle_gamma         115.92 
_cell.entry_id            4JRE 
_cell.length_a            81.91 
_cell.length_b            81.407 
_cell.length_c            138.487 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JRE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf2 B SG CYS 145 B CYS 145 1_555 B SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 C SG CYS 23 C CYS 23 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
disulf ? disulf4 C SG CYS 133 C CYS 133 1_555 C SG CYS 193 C CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf6 E SG CYS 145 H CYS 145 1_555 E SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf7 F SG CYS 23 L CYS 23 1_555 F SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
disulf ? disulf8 F SG CYS 133 L CYS 133 1_555 F SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C7 H14 O6' 
_chem_comp.formula_weight    194.182 
_chem_comp.id                GYP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'methyl alpha-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'METHYL-ALPHA-D-GLUCOPYRANOSIDE;ALPHA-METHYL-D-GLUCOPYRANOSIDE;methyl alpha-D-glucoside;methyl D-glucoside;methyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GYP sing 129 n n 
C1 O1 GYP sing 130 n n 
C1 O5 GYP sing 131 n n 
C1 H1 GYP sing 132 n n 
C2 C3 GYP sing 133 n n 
C2 O2 GYP sing 134 n n 
C2 H2 GYP sing 135 n n 
C3 C4 GYP sing 136 n n 
C3 O3 GYP sing 137 n n 
C3 H3 GYP sing 138 n n 
C4 C5 GYP sing 139 n n 
C4 O4 GYP sing 140 n n 
C4 H4 GYP sing 141 n n 
C5 C6 GYP sing 142 n n 
C5 O5 GYP sing 143 n n 
C5 H5 GYP sing 144 n n 
C6 O6 GYP sing 145 n n 
C6 H61 GYP sing 146 n n 
C6 H62 GYP sing 147 n n 
C7 O1 GYP sing 148 n n 
C7 H7C1 GYP sing 149 n n 
C7 H7C2 GYP sing 150 n n 
C7 H7C3 GYP sing 151 n n 
O2 HO2 GYP sing 152 n n 
O3 HO3 GYP sing 153 n n 
O4 HO4 GYP sing 154 n n 
O6 HO6 GYP sing 155 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
GYP DGlcp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
GYP 1-methyl-a-D-glucopyranose 'COMMON NAME' GMML 1 
GYP methyl-a-D-glucopyranoside 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
#
_atom_sites.entry_id                     4JRE 
_atom_sites.fract_transf_matrix[1][1]    0.012209 
_atom_sites.fract_transf_matrix[1][2]    0.005932 
_atom_sites.fract_transf_matrix[1][3]    0.00294 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013657 
_atom_sites.fract_transf_matrix[2][3]    0.003525 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NO2 A 1 501 1 NO2 NO2 . 
H 5 GYP A 1 502 1 GYP MAL . 
I 4 NO2 D 1 501 1 NO2 NO2 . 
J 5 GYP D 1 502 1 GYP MAL . 
K 6 HOH A 1 601 15 HOH HOH . 
L 6 HOH B 1 301 2 HOH HOH . 
L 6 HOH B 2 302 13 HOH HOH . 
L 6 HOH B 3 303 14 HOH HOH . 
L 6 HOH B 4 304 16 HOH HOH . 
L 6 HOH B 5 305 18 HOH HOH . 
L 6 HOH B 6 306 21 HOH HOH . 
L 6 HOH B 7 307 24 HOH HOH . 
L 6 HOH B 8 308 30 HOH HOH . 
L 6 HOH B 9 309 34 HOH HOH . 
M 6 HOH C 1 301 5 HOH HOH . 
M 6 HOH C 2 302 9 HOH HOH . 
M 6 HOH C 3 303 19 HOH HOH . 
M 6 HOH C 4 304 26 HOH HOH . 
M 6 HOH C 5 305 29 HOH HOH . 
M 6 HOH C 6 306 31 HOH HOH . 
N 6 HOH D 1 601 20 HOH HOH . 
O 6 HOH H 1 301 3 HOH HOH . 
O 6 HOH H 2 302 4 HOH HOH . 
O 6 HOH H 3 303 7 HOH HOH . 
O 6 HOH H 4 304 10 HOH HOH . 
O 6 HOH H 5 305 17 HOH HOH . 
O 6 HOH H 6 306 22 HOH HOH . 
O 6 HOH H 7 307 25 HOH HOH . 
O 6 HOH H 8 308 27 HOH HOH . 
O 6 HOH H 9 309 28 HOH HOH . 
O 6 HOH H 10 310 32 HOH HOH . 
O 6 HOH H 11 311 33 HOH HOH . 
P 6 HOH L 1 301 1 HOH HOH . 
P 6 HOH L 2 302 6 HOH HOH . 
P 6 HOH L 3 303 8 HOH HOH . 
P 6 HOH L 4 304 11 HOH HOH . 
P 6 HOH L 5 305 12 HOH HOH . 
P 6 HOH L 6 306 23 HOH HOH . 
P 6 HOH L 7 307 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GYP . . . J 5 58.166 -24.561 -21.137 1 98.25 ? C1 GYP 502 D 1 
HETATM 2 C C2 GYP . . . J 5 58.109 -23.019 -21.153 1 96.25 ? C2 GYP 502 D 1 
HETATM 3 C C3 GYP . . . J 5 59.386 -22.364 -21.688 1 94.82 ? C3 GYP 502 D 1 
HETATM 4 C C4 GYP . . . J 5 60.591 -22.882 -20.912 1 96.5 ? C4 GYP 502 D 1 
HETATM 5 C C5 GYP . . . J 5 60.637 -24.411 -20.993 1 100.91 ? C5 GYP 502 D 1 
HETATM 6 C C6 GYP . . . J 5 61.748 -24.94 -20.096 1 108.18 ? C6 GYP 502 D 1 
HETATM 7 C C7 GYP . . . J 5 56.87 -26.144 -22.368 1 89.71 ? C7 GYP 502 D 1 
HETATM 8 O O1 GYP . . . J 5 57.907 -25.158 -22.419 1 99.1 ? O1 GYP 502 D 1 
HETATM 9 O O2 GYP . . . J 5 56.972 -22.574 -21.898 1 99.99 ? O2 GYP 502 D 1 
HETATM 10 O O3 GYP . . . J 5 59.308 -20.936 -21.575 1 86.55 ? O3 GYP 502 D 1 
HETATM 11 O O4 GYP . . . J 5 61.803 -22.308 -21.427 1 91.6 ? O4 GYP 502 D 1 
HETATM 12 O O5 GYP . . . J 5 59.408 -25.036 -20.581 1 98.7 ? O5 GYP 502 D 1 
HETATM 13 O O6 GYP . . . J 5 61.82 -26.363 -20.208 1 119.04 ? O6 GYP 502 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#