data_4JRX # _model_server_result.job_id tApSgncYljiOTaxtl5bjMQ _model_server_result.datetime_utc '2024-11-02 05:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4jrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":302}' # _entry.id 4JRX # _exptl.entry_id 4JRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.06 _cell.angle_gamma 90 _cell.entry_id 4JRX _cell.length_a 55.1 _cell.length_b 78.408 _cell.length_c 105.339 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? disulf ? disulf4 D SG CYS 22 D CYS 23 1_555 D SG CYS 91 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? disulf ? disulf5 D SG CYS 162 D CYS 179 1_555 E SG CYS 165 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? disulf ? disulf6 E SG CYS 21 E CYS 23 1_555 E SG CYS 89 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? disulf ? disulf7 E SG CYS 139 E CYS 154 1_555 E SG CYS 204 E CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc1 A O ARG 14 A ARG 14 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc2 A O GLY 16 A GLY 16 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A O GLY 18 A GLY 18 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc4 D O GLN 5 D GLN 6 1_555 K NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc5 D O GLN 7 D GLN 8 1_555 K NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc6 D OG1 THR 106 D THR 123 1_555 K NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc7 D O GLY 107 D GLY 124 1_555 K NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4JRX _atom_sites.fract_transf_matrix[1][1] 0.018149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00097 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NA A 1 301 1 NA NA . G 7 IOD A 1 302 5 IOD IOD . H 7 IOD A 1 303 6 IOD IOD . I 7 IOD A 1 304 8 IOD IOD . J 7 IOD C 1 101 1 IOD IOD . K 6 NA D 1 301 2 NA NA . L 7 IOD D 1 302 3 IOD IOD . M 7 IOD D 1 303 4 IOD IOD . N 7 IOD D 1 304 7 IOD IOD . O 6 NA E 1 301 3 NA NA . P 7 IOD E 1 302 2 IOD IOD . Q 8 HOH A 1 401 3 HOH HOH . Q 8 HOH A 2 402 5 HOH HOH . Q 8 HOH A 3 403 6 HOH HOH . Q 8 HOH A 4 404 16 HOH HOH . Q 8 HOH A 5 405 20 HOH HOH . Q 8 HOH A 6 406 25 HOH HOH . Q 8 HOH A 7 407 34 HOH HOH . Q 8 HOH A 8 408 37 HOH HOH . Q 8 HOH A 9 409 38 HOH HOH . Q 8 HOH A 10 410 44 HOH HOH . Q 8 HOH A 11 411 48 HOH HOH . Q 8 HOH A 12 412 49 HOH HOH . Q 8 HOH A 13 413 52 HOH HOH . Q 8 HOH A 14 414 53 HOH HOH . Q 8 HOH A 15 415 56 HOH HOH . Q 8 HOH A 16 416 57 HOH HOH . Q 8 HOH A 17 417 59 HOH HOH . Q 8 HOH A 18 418 60 HOH HOH . Q 8 HOH A 19 419 69 HOH HOH . Q 8 HOH A 20 420 70 HOH HOH . Q 8 HOH A 21 421 71 HOH HOH . Q 8 HOH A 22 422 73 HOH HOH . Q 8 HOH A 23 423 76 HOH HOH . Q 8 HOH A 24 424 80 HOH HOH . Q 8 HOH A 25 425 90 HOH HOH . Q 8 HOH A 26 426 91 HOH HOH . Q 8 HOH A 27 427 95 HOH HOH . Q 8 HOH A 28 428 99 HOH HOH . Q 8 HOH A 29 429 100 HOH HOH . Q 8 HOH A 30 430 103 HOH HOH . Q 8 HOH A 31 431 104 HOH HOH . Q 8 HOH A 32 432 106 HOH HOH . Q 8 HOH A 33 433 109 HOH HOH . Q 8 HOH A 34 434 115 HOH HOH . Q 8 HOH A 35 435 120 HOH HOH . Q 8 HOH A 36 436 123 HOH HOH . Q 8 HOH A 37 437 130 HOH HOH . R 8 HOH B 1 101 2 HOH HOH . R 8 HOH B 2 102 10 HOH HOH . R 8 HOH B 3 103 18 HOH HOH . R 8 HOH B 4 104 19 HOH HOH . R 8 HOH B 5 105 40 HOH HOH . R 8 HOH B 6 106 41 HOH HOH . R 8 HOH B 7 107 43 HOH HOH . R 8 HOH B 8 108 50 HOH HOH . R 8 HOH B 9 109 51 HOH HOH . R 8 HOH B 10 110 63 HOH HOH . R 8 HOH B 11 111 64 HOH HOH . R 8 HOH B 12 112 66 HOH HOH . R 8 HOH B 13 113 74 HOH HOH . R 8 HOH B 14 114 93 HOH HOH . R 8 HOH B 15 115 101 HOH HOH . R 8 HOH B 16 116 114 HOH HOH . R 8 HOH B 17 117 118 HOH HOH . R 8 HOH B 18 118 129 HOH HOH . S 8 HOH C 1 201 24 HOH HOH . S 8 HOH C 2 202 45 HOH HOH . S 8 HOH C 3 203 77 HOH HOH . T 8 HOH D 1 401 1 HOH HOH . T 8 HOH D 2 402 4 HOH HOH . T 8 HOH D 3 403 8 HOH HOH . T 8 HOH D 4 404 11 HOH HOH . T 8 HOH D 5 405 13 HOH HOH . T 8 HOH D 6 406 17 HOH HOH . T 8 HOH D 7 407 21 HOH HOH . T 8 HOH D 8 408 22 HOH HOH . T 8 HOH D 9 409 23 HOH HOH . T 8 HOH D 10 410 28 HOH HOH . T 8 HOH D 11 411 29 HOH HOH . T 8 HOH D 12 412 30 HOH HOH . T 8 HOH D 13 413 32 HOH HOH . T 8 HOH D 14 414 35 HOH HOH . T 8 HOH D 15 415 39 HOH HOH . T 8 HOH D 16 416 58 HOH HOH . T 8 HOH D 17 417 61 HOH HOH . T 8 HOH D 18 418 68 HOH HOH . T 8 HOH D 19 419 75 HOH HOH . T 8 HOH D 20 420 78 HOH HOH . T 8 HOH D 21 421 81 HOH HOH . T 8 HOH D 22 422 84 HOH HOH . T 8 HOH D 23 423 86 HOH HOH . T 8 HOH D 24 424 87 HOH HOH . T 8 HOH D 25 425 88 HOH HOH . T 8 HOH D 26 426 92 HOH HOH . T 8 HOH D 27 427 97 HOH HOH . T 8 HOH D 28 428 98 HOH HOH . T 8 HOH D 29 429 102 HOH HOH . T 8 HOH D 30 430 110 HOH HOH . T 8 HOH D 31 431 112 HOH HOH . T 8 HOH D 32 432 117 HOH HOH . T 8 HOH D 33 433 119 HOH HOH . T 8 HOH D 34 434 121 HOH HOH . T 8 HOH D 35 435 122 HOH HOH . T 8 HOH D 36 436 127 HOH HOH . U 8 HOH E 1 401 7 HOH HOH . U 8 HOH E 2 402 9 HOH HOH . U 8 HOH E 3 403 12 HOH HOH . U 8 HOH E 4 404 14 HOH HOH . U 8 HOH E 5 405 15 HOH HOH . U 8 HOH E 6 406 26 HOH HOH . U 8 HOH E 7 407 27 HOH HOH . U 8 HOH E 8 408 31 HOH HOH . U 8 HOH E 9 409 33 HOH HOH . U 8 HOH E 10 410 36 HOH HOH . U 8 HOH E 11 411 42 HOH HOH . U 8 HOH E 12 412 46 HOH HOH . U 8 HOH E 13 413 47 HOH HOH . U 8 HOH E 14 414 54 HOH HOH . U 8 HOH E 15 415 55 HOH HOH . U 8 HOH E 16 416 62 HOH HOH . U 8 HOH E 17 417 65 HOH HOH . U 8 HOH E 18 418 67 HOH HOH . U 8 HOH E 19 419 72 HOH HOH . U 8 HOH E 20 420 79 HOH HOH . U 8 HOH E 21 421 82 HOH HOH . U 8 HOH E 22 422 83 HOH HOH . U 8 HOH E 23 423 85 HOH HOH . U 8 HOH E 24 424 89 HOH HOH . U 8 HOH E 25 425 94 HOH HOH . U 8 HOH E 26 426 96 HOH HOH . U 8 HOH E 27 427 105 HOH HOH . U 8 HOH E 28 428 107 HOH HOH . U 8 HOH E 29 429 108 HOH HOH . U 8 HOH E 30 430 111 HOH HOH . U 8 HOH E 31 431 113 HOH HOH . U 8 HOH E 32 432 116 HOH HOH . U 8 HOH E 33 433 124 HOH HOH . U 8 HOH E 34 434 125 HOH HOH . U 8 HOH E 35 435 126 HOH HOH . U 8 HOH E 36 436 128 HOH HOH . U 8 HOH E 37 437 131 HOH HOH . U 8 HOH E 38 438 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 7 _atom_site.Cartn_x 7.414 _atom_site.Cartn_y 0.049 _atom_site.Cartn_z 17.169 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 67.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 302 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #