data_4JRY
#
_model_server_result.job_id            PTrWP0H-9De7ehfMPKs7RQ 
_model_server_result.datetime_utc      '2024-12-12 20:09:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4jry 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":103}' 
#
_entry.id    4JRY 
#
_exptl.entry_id    4JRY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4JRY 
_cell.length_a            237.6 
_cell.length_b            237.6 
_cell.length_c            61.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4JRY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 89 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
disulf ? disulf5 D SG CYS 134 D CYS 149 1_555 D SG CYS 184 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf6 D SG CYS 159 D CYS 174 1_555 E SG CYS 169 E CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
disulf ? disulf7 E SG CYS 22 E CYS 23 1_555 E SG CYS 90 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
disulf ? disulf8 E SG CYS 143 E CYS 157 1_555 E SG CYS 208 E CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc1 B OD1 ASN 84 B ASN 83 1_555 G MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc2 B O HIS 85 B HIS 84 1_555 G MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc3 B O LEU 88 B LEU 87 1_555 G MG MG . B MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4JRY 
_atom_sites.fract_transf_matrix[1][1]    0.004209 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004209 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NA B 1 101 1 NA NA . 
G 7 MG B 1 102 2 MG MG . 
H 7 MG B 1 103 3 MG MG . 
I 8 HOH A 1 301 1 HOH HOH . 
I 8 HOH A 2 302 2 HOH HOH . 
I 8 HOH A 3 303 21 HOH HOH . 
I 8 HOH A 4 304 30 HOH HOH . 
I 8 HOH A 5 305 33 HOH HOH . 
I 8 HOH A 6 306 35 HOH HOH . 
I 8 HOH A 7 307 38 HOH HOH . 
I 8 HOH A 8 308 60 HOH HOH . 
I 8 HOH A 9 309 62 HOH HOH . 
I 8 HOH A 10 310 64 HOH HOH . 
I 8 HOH A 11 311 65 HOH HOH . 
I 8 HOH A 12 312 69 HOH HOH . 
I 8 HOH A 13 313 73 HOH HOH . 
I 8 HOH A 14 314 83 HOH HOH . 
I 8 HOH A 15 315 91 HOH HOH . 
I 8 HOH A 16 316 97 HOH HOH . 
I 8 HOH A 17 317 101 HOH HOH . 
I 8 HOH A 18 318 104 HOH HOH . 
I 8 HOH A 19 319 118 HOH HOH . 
I 8 HOH A 20 320 123 HOH HOH . 
J 8 HOH B 1 201 13 HOH HOH . 
J 8 HOH B 2 202 17 HOH HOH . 
J 8 HOH B 3 203 32 HOH HOH . 
J 8 HOH B 4 204 39 HOH HOH . 
J 8 HOH B 5 205 43 HOH HOH . 
J 8 HOH B 6 206 49 HOH HOH . 
J 8 HOH B 7 207 52 HOH HOH . 
J 8 HOH B 8 208 58 HOH HOH . 
J 8 HOH B 9 209 75 HOH HOH . 
J 8 HOH B 10 210 80 HOH HOH . 
J 8 HOH B 11 211 89 HOH HOH . 
J 8 HOH B 12 212 98 HOH HOH . 
J 8 HOH B 13 213 107 HOH HOH . 
J 8 HOH B 14 214 121 HOH HOH . 
K 8 HOH C 1 101 47 HOH HOH . 
K 8 HOH C 2 102 55 HOH HOH . 
L 8 HOH D 1 301 3 HOH HOH . 
L 8 HOH D 2 302 4 HOH HOH . 
L 8 HOH D 3 303 6 HOH HOH . 
L 8 HOH D 4 304 8 HOH HOH . 
L 8 HOH D 5 305 11 HOH HOH . 
L 8 HOH D 6 306 12 HOH HOH . 
L 8 HOH D 7 307 14 HOH HOH . 
L 8 HOH D 8 308 18 HOH HOH . 
L 8 HOH D 9 309 19 HOH HOH . 
L 8 HOH D 10 310 20 HOH HOH . 
L 8 HOH D 11 311 31 HOH HOH . 
L 8 HOH D 12 312 36 HOH HOH . 
L 8 HOH D 13 313 40 HOH HOH . 
L 8 HOH D 14 314 46 HOH HOH . 
L 8 HOH D 15 315 51 HOH HOH . 
L 8 HOH D 16 316 54 HOH HOH . 
L 8 HOH D 17 317 66 HOH HOH . 
L 8 HOH D 18 318 72 HOH HOH . 
L 8 HOH D 19 319 86 HOH HOH . 
L 8 HOH D 20 320 87 HOH HOH . 
L 8 HOH D 21 321 88 HOH HOH . 
L 8 HOH D 22 322 92 HOH HOH . 
L 8 HOH D 23 323 96 HOH HOH . 
L 8 HOH D 24 324 99 HOH HOH . 
L 8 HOH D 25 325 100 HOH HOH . 
L 8 HOH D 26 326 110 HOH HOH . 
L 8 HOH D 27 327 111 HOH HOH . 
L 8 HOH D 28 328 116 HOH HOH . 
L 8 HOH D 29 329 117 HOH HOH . 
L 8 HOH D 30 330 119 HOH HOH . 
L 8 HOH D 31 331 120 HOH HOH . 
L 8 HOH D 32 332 122 HOH HOH . 
M 8 HOH E 1 301 5 HOH HOH . 
M 8 HOH E 2 302 7 HOH HOH . 
M 8 HOH E 3 303 9 HOH HOH . 
M 8 HOH E 4 304 10 HOH HOH . 
M 8 HOH E 5 305 15 HOH HOH . 
M 8 HOH E 6 306 16 HOH HOH . 
M 8 HOH E 7 307 22 HOH HOH . 
M 8 HOH E 8 308 23 HOH HOH . 
M 8 HOH E 9 309 24 HOH HOH . 
M 8 HOH E 10 310 25 HOH HOH . 
M 8 HOH E 11 311 26 HOH HOH . 
M 8 HOH E 12 312 27 HOH HOH . 
M 8 HOH E 13 313 28 HOH HOH . 
M 8 HOH E 14 314 29 HOH HOH . 
M 8 HOH E 15 315 34 HOH HOH . 
M 8 HOH E 16 316 37 HOH HOH . 
M 8 HOH E 17 317 41 HOH HOH . 
M 8 HOH E 18 318 42 HOH HOH . 
M 8 HOH E 19 319 44 HOH HOH . 
M 8 HOH E 20 320 45 HOH HOH . 
M 8 HOH E 21 321 48 HOH HOH . 
M 8 HOH E 22 322 50 HOH HOH . 
M 8 HOH E 23 323 53 HOH HOH . 
M 8 HOH E 24 324 56 HOH HOH . 
M 8 HOH E 25 325 57 HOH HOH . 
M 8 HOH E 26 326 59 HOH HOH . 
M 8 HOH E 27 327 61 HOH HOH . 
M 8 HOH E 28 328 63 HOH HOH . 
M 8 HOH E 29 329 67 HOH HOH . 
M 8 HOH E 30 330 68 HOH HOH . 
M 8 HOH E 31 331 70 HOH HOH . 
M 8 HOH E 32 332 71 HOH HOH . 
M 8 HOH E 33 333 74 HOH HOH . 
M 8 HOH E 34 334 76 HOH HOH . 
M 8 HOH E 35 335 77 HOH HOH . 
M 8 HOH E 36 336 78 HOH HOH . 
M 8 HOH E 37 337 79 HOH HOH . 
M 8 HOH E 38 338 81 HOH HOH . 
M 8 HOH E 39 339 82 HOH HOH . 
M 8 HOH E 40 340 84 HOH HOH . 
M 8 HOH E 41 341 85 HOH HOH . 
M 8 HOH E 42 342 90 HOH HOH . 
M 8 HOH E 43 343 93 HOH HOH . 
M 8 HOH E 44 344 94 HOH HOH . 
M 8 HOH E 45 345 95 HOH HOH . 
M 8 HOH E 46 346 102 HOH HOH . 
M 8 HOH E 47 347 103 HOH HOH . 
M 8 HOH E 48 348 105 HOH HOH . 
M 8 HOH E 49 349 106 HOH HOH . 
M 8 HOH E 50 350 108 HOH HOH . 
M 8 HOH E 51 351 109 HOH HOH . 
M 8 HOH E 52 352 112 HOH HOH . 
M 8 HOH E 53 353 113 HOH HOH . 
M 8 HOH E 54 354 114 HOH HOH . 
M 8 HOH E 55 355 115 HOH HOH . 
M 8 HOH E 56 356 124 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               -5.399 
_atom_site.Cartn_y               -23.803 
_atom_site.Cartn_z               23.787 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        53.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           103 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#