data_4JS8 # _model_server_result.job_id vx3FwvrIDyFkHqC0pFGp2w _model_server_result.datetime_utc '2025-01-10 08:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4js8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":806}' # _entry.id 4JS8 # _exptl.entry_id 4JS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4JS8 _cell.length_a 70.704 _cell.length_b 107.939 _cell.length_c 113.233 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4JS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 A,B,C,D,E,F,G,H,I 3 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 160 A ASP 674 1_555 A N TPO 161 A TPO 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C GLY 171 A GLY 685 1_555 A N TPO 172 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C TPO 172 A TPO 686 1_555 A N VAL 173 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 197 n n C1 C2 GOL sing 198 n n C1 H11 GOL sing 199 n n C1 H12 GOL sing 200 n n O1 HO1 GOL sing 201 n n C2 O2 GOL sing 202 n n C2 C3 GOL sing 203 n n C2 H2 GOL sing 204 n n O2 HO2 GOL sing 205 n n C3 O3 GOL sing 206 n n C3 H31 GOL sing 207 n n C3 H32 GOL sing 208 n n O3 HO3 GOL sing 209 n n # _atom_sites.entry_id 4JS8 _atom_sites.fract_transf_matrix[1][1] 0.014143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PF A 1 801 1 1PF 348 . C 3 SO4 A 1 802 2 SO4 SO4 . D 3 SO4 A 1 803 3 SO4 SO4 . E 4 PEG A 1 804 1 PEG PEG . F 4 PEG A 1 805 2 PEG PEG . G 5 GOL A 1 806 1 GOL GOL . H 5 GOL A 1 807 2 GOL GOL . I 6 HOH A 1 901 1 HOH HOH . I 6 HOH A 2 902 2 HOH HOH . I 6 HOH A 3 903 3 HOH HOH . I 6 HOH A 4 904 4 HOH HOH . I 6 HOH A 5 905 5 HOH HOH . I 6 HOH A 6 906 6 HOH HOH . I 6 HOH A 7 907 7 HOH HOH . I 6 HOH A 8 908 8 HOH HOH . I 6 HOH A 9 909 9 HOH HOH . I 6 HOH A 10 910 10 HOH HOH . I 6 HOH A 11 911 11 HOH HOH . I 6 HOH A 12 912 13 HOH HOH . I 6 HOH A 13 913 14 HOH HOH . I 6 HOH A 14 914 15 HOH HOH . I 6 HOH A 15 915 17 HOH HOH . I 6 HOH A 16 916 18 HOH HOH . I 6 HOH A 17 917 19 HOH HOH . I 6 HOH A 18 918 20 HOH HOH . I 6 HOH A 19 919 21 HOH HOH . I 6 HOH A 20 920 22 HOH HOH . I 6 HOH A 21 921 23 HOH HOH . I 6 HOH A 22 922 24 HOH HOH . I 6 HOH A 23 923 26 HOH HOH . I 6 HOH A 24 924 28 HOH HOH . I 6 HOH A 25 925 29 HOH HOH . I 6 HOH A 26 926 30 HOH HOH . I 6 HOH A 27 927 31 HOH HOH . I 6 HOH A 28 928 35 HOH HOH . I 6 HOH A 29 929 38 HOH HOH . I 6 HOH A 30 930 39 HOH HOH . I 6 HOH A 31 931 40 HOH HOH . I 6 HOH A 32 932 42 HOH HOH . I 6 HOH A 33 933 43 HOH HOH . I 6 HOH A 34 934 44 HOH HOH . I 6 HOH A 35 935 45 HOH HOH . I 6 HOH A 36 936 46 HOH HOH . I 6 HOH A 37 937 48 HOH HOH . I 6 HOH A 38 938 49 HOH HOH . I 6 HOH A 39 939 50 HOH HOH . I 6 HOH A 40 940 52 HOH HOH . I 6 HOH A 41 941 53 HOH HOH . I 6 HOH A 42 942 55 HOH HOH . I 6 HOH A 43 943 56 HOH HOH . I 6 HOH A 44 944 57 HOH HOH . I 6 HOH A 45 945 60 HOH HOH . I 6 HOH A 46 946 61 HOH HOH . I 6 HOH A 47 947 63 HOH HOH . I 6 HOH A 48 948 66 HOH HOH . I 6 HOH A 49 949 67 HOH HOH . I 6 HOH A 50 950 68 HOH HOH . I 6 HOH A 51 951 70 HOH HOH . I 6 HOH A 52 952 72 HOH HOH . I 6 HOH A 53 953 73 HOH HOH . I 6 HOH A 54 954 77 HOH HOH . I 6 HOH A 55 955 79 HOH HOH . I 6 HOH A 56 956 82 HOH HOH . I 6 HOH A 57 957 83 HOH HOH . I 6 HOH A 58 958 84 HOH HOH . I 6 HOH A 59 959 85 HOH HOH . I 6 HOH A 60 960 87 HOH HOH . I 6 HOH A 61 961 89 HOH HOH . I 6 HOH A 62 962 90 HOH HOH . I 6 HOH A 63 963 93 HOH HOH . I 6 HOH A 64 964 94 HOH HOH . I 6 HOH A 65 965 96 HOH HOH . I 6 HOH A 66 966 103 HOH HOH . I 6 HOH A 67 967 108 HOH HOH . I 6 HOH A 68 968 109 HOH HOH . I 6 HOH A 69 969 110 HOH HOH . I 6 HOH A 70 970 111 HOH HOH . I 6 HOH A 71 971 112 HOH HOH . I 6 HOH A 72 972 113 HOH HOH . I 6 HOH A 73 973 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 17.506 3.556 36.053 1 91.03 ? C1 GOL 806 A 1 HETATM 2 O O1 GOL . . . G 5 17.194 4.245 34.849 1 90.92 ? O1 GOL 806 A 1 HETATM 3 C C2 GOL . . . G 5 16.812 4.189 37.237 1 91.15 ? C2 GOL 806 A 1 HETATM 4 O O2 GOL . . . G 5 16.875 3.307 38.36 1 91.37 ? O2 GOL 806 A 1 HETATM 5 C C3 GOL . . . G 5 17.432 5.519 37.602 1 91.04 ? C3 GOL 806 A 1 HETATM 6 O O3 GOL . . . G 5 16.641 6.197 38.568 1 90.79 ? O3 GOL 806 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #